1. Nocardioides stalactiti sp. nov., isolated from a cave stalactite surface.
- Author
-
Zhou XK, Huang Y, Zhang TK, Liu JJ, Liu ZY, Zhu ML, Ma L, Liu T, Wang XJ, and Mo MH
- Subjects
- Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial genetics, Diaminopimelic Acid chemistry, Fatty Acids chemistry, Nocardioides isolation & purification, Phospholipids chemistry, RNA, Ribosomal, 16S genetics, Sequence Analysis, DNA, Vitamin K 2 analogs & derivatives, Vitamin K 2 chemistry, Caves microbiology, Nocardioides classification, Phylogeny
- Abstract
An aerobic, rod-shaped, Gram-stain-positive, actinobacterial strain, designated 1.0914
T , was isolated from a stalactite sample collected from a cave located in Guizhou Province, southwest PR China. Based on 16S rRNA gene sequence analysis, strain 1.0914T shared highest similarities values with Nocardioides pelophilus CGMCC 4.7388T (97.7 %), Nocardioides immobilis CCTCC AB 2017083T (97.5 %) and Nocardioides silvaticus CCTCC AB 2018079T (97.3 %) and values lower than 97.0 % to other members of the genus Nocardioides . Phylogenetic trees based on 16S rRNA gene sequences indicated that strain 1.0914T formed an isolated branch with N. pelophilus CGMCC 4.7388T , N. immobilis CCTCC AB 2017083T and N. silvaticus CCTCC AB 2018079T . The polar lipids contained phosphatidylglycerol, diphosphatidylglycerol, phosphatidylinositol and one unidentified phospholipid in the cellular membrane. The major fatty acids were identified as iso-C16 : 0 , C18 : 1 ω9 c , C17 : 1 ω8 c and C16 : 0 . The predominant respiratory quinone was MK-8(H4 ) and ll-diaminopimelic acid was the diagnostic diamino acid in the cell-wall peptidoglycan. The genomic DNA G+C content was 71.1 mol%. The orthologous average nucleotide identiy values between N. pelophilus CGMCC 4.7388T , N. immobilis CCTCC AB 2017083T , N. silvaticus CCTCC 2018079T and strain 1.0914T were 82.3, 81.7 and 81.9 % respectively. DNA-DNA hybridization values between N. pelophilus CGMCC 4.7388T , N. immobilis CCTCC AB 2017083T , N. silvaticus CCTCC 2018079T and strain 1.0914T were 25.2, 24.6 and 24.5 % respectively. The phylogenetic, phenotypic and chemotaxonomic data supported the classification of strain 1.0914T as representing a new species of Nocardioides , for which the name Nocardioides stalactiti sp. nov. is proposed. The type strain is 1.0914T (=CCTCC AB 2018266T =KCTC 49243T ).- Published
- 2021
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