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Background: Brachiaria humidicola (Bh) has the ability to produce biological nitrification inhibitors (NIs) and release NIs from the root to the soil. Aims: To compare the effects of growing Bh with Brachiaria ruziziensis (Br, which is not able to produce NIs) on soil nitrogen (N) dynamics, N gases and carbon dioxide (CO2) emissions and nitrifiers and denitrifiers following sheep urine application, a laboratory incubation was conducted in a He/O2 continuous flow denitrification system (DENIS). This incubation was conducted in the absence of light. Hence the measured effects of Bh and Br on N cycling were the residual effect of biological NIs released into the soil prior to the incubation and released via root death. Methods: The treatments were: (1) Bh with water application (Bh + W); (2) Bh with sheep urine (Bh + U); (3) Br with water application (Br + W); (4) Br with sheep urine (Br + U). Results: Results showed that soil NO3– concentration increased significantly in the soil with sheep urine application after the incubation. Soil nitrous oxide (N2O) and nitric oxide (NO) emissions increased immediately after the sheep urine application and peaked twice during the incubation. Cumulative emissions for the first peak were significantly lower from the Bh + U treatment (0.054 kg N ha–1) compared with the Br + U treatment (0.111 kg N ha–1), but no significant differences were observed in the total cumulative N2O and NO emissions between the Bh + U and Br + U treatment at the end of the incubation. Sheep urine addition did not affect the AOA, nirS and nosZ gene copies, but significantly increased the AOB gene copies after the incubation. Conclusions: We conclude that the residual effect of Bh to mitigate N2O emissions in a highly nitrifying soil is short‐lived. [ABSTRACT FROM AUTHOR]

Biological nitrification inhibition is a plant‐mediated rhizosphere process where natural nitrification inhibitors can be produced and released by roots to suppress nitrifier activity in soil. Nitrification is one of the critical soil processes in the nitrogen (N) cycle, but unrestricted and rapid nitrification in agricultural systems can result in major losses of N from the plant–soil system (i.e., by NO3− leaching and gaseous N emissions). In this study, we explored the potential efficacy of biological nitrification inhibitors (linoleic acid [LA] and linolenic acid [LN]) and a proven efficient synthetic (dicyandiamide [DCD]) nitrification inhibitor on N dynamics, nitrous oxide (N2O) and carbon dioxide (CO2) emissions in a highly nitrifying soil. 14C‐labelled LA, LN and DCD mineralization was determined in a parallel experiment to explore the fate of inhibitors after application. We found that LA and LN had no effect on soil NH4+ concentrations, but significantly decreased NO3− concentrations. Soil that received DCD had lower NO3− and higher NH4+ concentrations than the control (soil without nitrification inhibitors). LA and LN increased the cumulative N2O and CO2 emissions when they were applied at high concentrations (635 or 1,270 mg kg−1 dry soil). LA and LN had a much greater mineralization rate than that of DCD: 47–56%, 37–61% and 2.7–5.5%, respectively, after 38 days incubation. We conclude that in contrast to the direct inhibition of nitrification caused by DCD, addition of LA and LN may cause apparent nitrification inhibition by promoting microbial immobilization of soil NH4+ and/or NO3−. Future studies on nitrification inhibitors need to clearly differentiate between the direct and indirect effects that result from addition of these compounds to soil. Highlights: The efficacy and stability of nitrification inhibitors in a highly nitrifying soil were explored.This study supports efforts to mitigate N losses and improve nitrogen use efficiency of inputs.Addition of LA, LN and DCD can decrease NO3− concentration, but their modes of action may be different.The apparent effect of LA and LN on soil NO3− concentration could be indirect. [ABSTRACT FROM AUTHOR]

The application of organic materials to soil can recycle nutrients and increase organic matter in agricultural lands. Digestate can be used as a nutrient source for crop production but it has also been shown to stimulate greenhouse gas (GHG) emissions from amended soils. While edaphic factors, such as soil texture and pH, have been shown to be strong determinants of soil GHG fluxes, the impact of the legacy of previous management practices is less well understood. Here we aim to investigate the impact of such legacy effects and to contrast them against soil properties to identify the key determinants of soil GHG fluxes following digestate application. Soil from an already established field experiment was used to set up a pot experiment, to evaluate N2O, CH4 and CO2 fluxes from cattle‐slurry‐digestate amended soils. The soil had been treated with farmyard manure, green manure or synthetic N‐fertilizer, 18 months before the pot experiment was set up. Following homogenization and a preincubation stage, digestate was added at a concentration of 250 kg total N/ha eq. Soil GHG fluxes were then sampled over a 64 day period. The digestate stimulated emissions of the three GHGs compared to controls. The legacy of previous soil management was found to be a key determinant of CO2 and N2O flux while edaphic variables did not have a significant effect across the range of variables included in this experiment. Conversely, edaphic variables, in particular texture, were the main determinant of CH4 flux from soil following digestate application. Results demonstrate that edaphic factors and current soil management regime alone are not effective predictors of soil GHG flux response following digestate application. Knowledge of the site management in terms of organic amendments is required to make robust predictions of the likely soil GHG flux response following digestate application to soil. [ABSTRACT FROM AUTHOR]

Drying and rewetting cycles are known to be important for the dynamics of carbon (C), phosphorus (P), and nitrogen (N) in soils. This study reports the short‐term responses of these nutrients to consecutive drying and rewetting cycles and how varying soil moisture content affects microbial biomass C and P (MBC and MBP), as well as associated carbon dioxide (CO2) and nitrous oxide (N2O) emissions. The soil was incubated for 14 d during which two successive drying–rewetting episodes were imposed on the soils. Soils subjected to drying (DRW) were rewetted on the seventh day of each drying period to return them to 60% water holding capacity, whilst continually moist samples (M), with soil maintained at 60% water holding capacity, were used as control samples. During the first seven days, the DRW samples showed significant increases in extractable ammonium, total oxidized nitrogen, and bicarbonate extractable P concentrations. Rewetting after the first drying event produced significant increases only in CO2 flux (55.4 µg C g−1 d−1). The MBC and MBP concentrations fluctuated throughout the incubation in both treatments and only the second drying–rewetting event resulted in a significantly MBC decrease (416.2 and 366.8 mg kg−1 in M and DRW soils, respectively). The two drying–rewetting events impacted the microbial biomass, but distinguishing the different impacts of microbial versus physical impacts of the perturbation is difficult. However, this study, having a combined approach (C, N, and P), indicates the importance of understanding how soils will react to changing patterns of drying–rewetting under future climate change. [ABSTRACT FROM AUTHOR]

• Soil microbial community structure varied at different slope positions under maize cultivation. • Greater incorporation of old SOC (C3-C) by soil microorganisms in the bottom position of slope. • Use of maize-carbon is dominated by Gram positive bacteria and fungi. • Potential CO 2 and N 2 O emissions increased at bottom of ploughed slope. • Carbon sink potential of bottom slopes may be diminished by GHG emissions. Determining whether agricultural soils act as sinks or sources of greenhouse gases (GHGs) requires the quantification of variations in the pools and fluxes of soil organic carbon (SOC) and nutrients, e.g. nitrogen (N), as well as the associated soil microbial responses. In this study, soil was collected from experimental plots of maize (Zea mays) under conventional, minimum or strip tillage treatments established in a sloping field (~10%) of loamy soil in SW England, UK, where maize had been cultivated conventionally for 12 years. Topsoil (0–10 cm) cores were collected from the top, mid, bottom and foot slope positions to investigate soil C, N and microbial properties. The impact of conventional management on potential GHG emissions was assessed by incubating soils collected from the top, mid and bottom slope positions from the conventional treatment. Contents of SOC and total N were greatest at the top slope position and soil mineral N (NO 3 −-N and NH 4 +-N) concentrations were greater at the bottom and foot slope positions in all treatments. Biomarker phospholipid fatty acids (PLFA) for Gram positive bacteria and fungi were relatively 13C-enriched at each slope position regardless of treatment, indicating preferential utilization of organic matter from maize (C 4) rather than SOC (C 3). Around 70% of carbon incorporated into total PLFA was derived from C 3 -SOC at the slope foot, indicating that more SOC older than 12 years was being mineralized at the depositional position. Effluxes of N 2 O and CO 2 , and total GHG emission were greatest from the incubated soils sampled from the bottom slope position, suggesting that conditions in depositional positions of regularly ploughed sloping arable fields may have increased the potential for mineralization and denitrification. We conclude that the C sink potential of the depositional positions of slopes may be diminished by coincidental GHG emissions. [ABSTRACT FROM AUTHOR]

• RFR and XGB favourably fill gaps in challenging ecosystems. • RFR and XGB reproduced ecosystem responses well. • RFR and XGB overcame the effects of slow biomass changes on gap-filling. • Identifying the main environmental drivers were imperative to filling methane gaps. Eddy covariance serves as one the most effective techniques for long-term monitoring of ecosystem fluxes, however long-term data integrations rely on complete timeseries, meaning that any gaps due to missing data must be reliably filled. To date, many gap-filling approaches have been proposed and extensively evaluated for mature and/or less actively managed ecosystems. Random forest regression (RFR) has been shown to be stable and perform better in these systems than alternative approaches, particularly when filling longer gaps. However, the performance of RFR gap filling remains less certain in more challenging ecosystems, e.g., actively managed agri-ecosystems and following recent land-use change due to management disturbances, ecosystems with relatively low fluxes due to low signal to noise ratios, or for trace gases other than carbon dioxide (e.g., methane). In an extension to earlier work on gap filling global carbon dioxide, water, and energy fluxes, we assess the RFR approach for gap filling methane fluxes globally. We then investigate a range of gap-filling methodologies for carbon dioxide, water, energy, and methane fluxes in challenging ecosystems, including European managed pastures, Southeast Asian converted peatlands, and North American drylands. Our findings indicate that RFR is a competent alternative to existing research standard gap-filling algorithms. The marginal distribution sampling (MDS) is still suggested for filling short (< 12 days) gaps in carbon dioxide fluxes, but RFR is better for filling longer (> 30 days) gaps in carbon dioxide fluxes and also for gap filling other fluxes (e.g. sensible heat, latent energy and methane). In addition, using RFR with globally available reanalysis environmental drivers is effective when measured drivers are unavailable. Crucially, RFR was able to reliably fill cumulative fluxes for gaps > 3 moths and, unlike other common approaches, key environment-flux responses were preserved in the gap-filled data. [ABSTRACT FROM AUTHOR]

Bacteria and fungi have been shown to produce nitrous oxide (N 2 O) during denitrification, but their contribution after nitrate (NO 3 −) application to soil is not clearly established. In a microcosm experiment, the relative contribution of bacteria and fungi to N 2 O and carbon dioxide (CO 2) production by four contrasting soils representing different land uses after KNO 3 addition was studied. The soils were daily wetted to 80% water-filled pore space (WFPS) and kept under greenhouse conditions for 10 days. The fungicide cycloheximide and the bactericide streptomycin were used to determine the possible microbial origin of the N 2 O and CO 2 emissions. Non-target effects of the antibiotics on the emission of N 2 O and CO 2 were evaluated using the inhibitor additivity ratio (IAR). The abundance of the bacterial and fungal communities was estimated by quantitative PCR (qPCR) of the bacterial 16S rRNA gene and the fungal internal transcribed spacer (ITS) region, respectively. The gene copy number of bacterial denitrifiers was calculated after quantification of the nirK , nirS , norB , nosZ I and nosZ II genes. After 10 d, regardless of the soil type, the cumulative N 2 O emission from the soils treated with cycloheximide or streptomycin were similar. In all the four soils, N 2 O fluxes were greater (on average 1.8 ± 0.3 times) in soils amended with the fungicide than with the bactericide during incubation for the first 48–96 h. Greater N 2 O emissions (on average 1.7 ± 0.2 times) were detected in soils where bacteria were inhibited in comparison to those treated with the fungicide from 96 to 240 h. On average, 68.5% of the total CO 2 emitted during the 10-d incubation period was produced in soils treated with the fungicide and 31.5% in those treated with the bactericide. The greater contribution of bacteria to the production of N 2 O than fungi during the first 48–96 h was possibly due to a faster used of nitrate. Variations in the abundance of bacterial 16S rRNA genes, the ITS region, and the nirK , nirS , norB and nosZ I bacterial denitrification genes indicated that the antibiotics used to prevent the growth of bacteria and fungi were effective during incubation. These results suggest that both bacteria and fungi should be considered when designing and applying greenhouse gas mitigation strategies in soils and that their relative contribution to produce N 2 O and CO 2 can vary with time and nitrate availability. • In a 10-d microcosm experiment, bacteria dominated fungi for N 2 O emissions during the first 3 d after N-fertilisation. • Fungi dominated bacteria for N 2 O emissions during the remaining 7-d of treatment. • After 10-d, bacteria and fungi similarly contributed to N 2 O production in the four soils analysed. • Bacteria were greater CO 2 producers than fungi after the 10-d treatment in the four soils analysed. • Bacteria and fungi should be considered when designing greenhouse gas mitigation strategies. [ABSTRACT FROM AUTHOR]