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1. Figure S1. Alignment of curated sequences used for phylogenetic analysis from Role of amylopectin synthesis in Toxoplasma gondii and its implication in vaccine development against toxoplasmosis

2. Table S1. Primers used in this study from Role of amylopectin synthesis in Toxoplasma gondii and its implication in vaccine development against toxoplasmosis

3. Figure S2. Quantification of amylopectin levels. A. Quantification of the intensity of PAS staining signals in Figure 2D and 7E, as a way to compare amylopectin levels in indicated strains. Median with interquartile range, ***p ≤ 0.001, Student's t test. B. Amylopectin in ME49 and the Δss mutant was hydrolyzed to glucose by α-amylase and α-glucosidase. Then the level of amylopectin derived glucose was determined by high performance liquid chromatography, following the previously described methods (Hu et al., Carbohydr Polym. 196, 359-367). For data processing, in each experiment, the measured amylopectin level in ME49 tachyzoites was set as 1 and used as a reference for normalization of the rest samples. Tachyzoites and bradyzoites were obtained as described in Figure 2D

4. Figure S3. Replication rates of ME49 and the Δss mutant (24 hours post-infection) in different media, as determined by the number of parasites in each PV. Means ± SEM of three independent experiments, ***p <0.001, two-way ANOVA. from Role of amylopectin synthesis in Toxoplasma gondii and its implication in vaccine development against toxoplasmosis

5. Figure S5. ME49 and Δss parasites were first induced with alkaline medium plus ambient CO2 for 12 days to form bradyzoites. Then, the medium was changed to standard tachyzoite growth medium and the parasites were cultured with 5% CO2 for indicated amounts of time. Subsequently, parasitophorous vacuoles were examined under a phase contrast microscope to check the status of egress. After 48 hours of induction, almost all ME49 vacuoles were egressed and no intact vacuoles were left. In contrast, egress of the Δss mutant was much delayed

6. Figure S4. Phenotypic analysis on two additional Δss clones. (A) Intracellular replication, similar to figure 4C. ***P < 0.001, two-way ANOVA. (B) Amylopectin accumulation determined by PAS staining, as in figure 2D. (C) Efficiency of bradyzoite transition upon alkaline induction, as in figure 4D. *P < 0.05, student's t-test. from Role of amylopectin synthesis in Toxoplasma gondii and its implication in vaccine development against toxoplasmosis

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