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Background Although the seed oil content in canola is a crucial quality determining trait, the regulatory mechanisms of its formation are not fully discovered. This study compared the silique and seed physiological characteristics including fresh and dry weight, seed oil content, chlorophyll content, and carbohydrate content in a high oil content line (HOCL) and a low oil content line (LOCL) of canola derived from a recombinant inbred line in 2010, 2011, and 2012. The aim of the investigation is to uncover the physiological regulation of silique and seed developmental events on seed oil content in canola. Results On average, 83% and 86% of silique matter while 69% and 63% of seed matter was produced before 30 days after anthesis (DAA) in HOCL and LOCL, respectively, over three years. Furthermore, HOCL exhibited significantly higher fresh and dry matter at most developmental stages of siliques and seeds. From 20 DAA, lipids were deposited in the seed of HOCL significantly faster than that of LOCL, which was validated by transmission electron microscopy, showing that HOCL accumulates considerable more oil bodies in the seed cells. Markedly higher silique chlorophyll content was observed in HOCL consistently over the three consecutive years, implying a higher potential of photosynthetic capacity in siliques of HOCL. As a consequence, HOCL exhibited significantly higher content of fructose, glucose, sucrose, and starch mainly at 20 to 45 DAA, a key stage of seed lipid deposition. Moreover, seed sugar content was usually higher than silique indicating the importance of sugar transportation from siliques to seeds as substrate for lipid biosynthesis. The much lower silique cellulose content in HOCL was beneficial for lipid synthesis rather than consuming excessive carbohydrate for cell wall. Conclusions Superior physiological characteristics of siliques in HOCL showed advantage to produce more photosynthetic assimilates, which were highly correlated to seed oil contents. Electronic supplementary material The online version of this article (doi:10.1186/1999-3110-55-34) contains supplementary material, which is available to authorized users.

High temperature stress is an important abiotic stress during plant growth and development that can damage canola male reproductive organ development. In this present study, we characterized a canola genic male sterile line that its fertility can be restored after high temperature induction with heterozygous but not homozygous condition. Anther length and weight was elongated and increased 2 and 5.7 times at 9 days after high temperature treatment in heterozygous line. Furthermore, viable pollen grain was produced in the anther. Anther carbohydrate content was assayed. The result showed that fructose and sucrose contents were much more stable under heat stress both in hetero- or homozygous lines. However, glucose and starch content was considerably increased after high temperature treatment in heterozygous line. In particular, anther glucose content was twice as much as that of starch content after 5 days high temperature treatment. Activity of neutral invertase, acid invertase, and sucrose synthase were increased in the anther of heterozygous line under heat stress. But activity of neutral invertase was the highest among these three sucrose cleavage enzymes. Both activity of sucrose phosphate synthase and starch phosphorylase were decreased under heat stress in the anther of heterozygous line. Activity of ADP glucose pyrophosphorylase was greatly increased in the heterozygous line, which was beneficial for starch accumulation. Transcription level of carbohydrate related genes was analyzed. 27 and 34 of the carbohydrate related genes were identified for down- and up-regulated in the anther of heterozygous line, respectively. Their function involved in the regulation of heat tolerance of heterozygous line was also discussed. Key words: Canola, carbohydrate, gene.