1. Comprehensive cross-platform comparison of methods for non-invasive EGFR mutation testing : results of the RING observational trial
- Author
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Jorge García González, Alejandro Rodriguez-Festa, Bartomeu Massuti, M. Guirado, Silvia Calabuig-Fariñas, Ana Blasco, A. Insa, Sergio Vazquez Estévez, J. M. Jurado, Miguel Angel Molina-Vila, Manuel Cobo, Berta Hernandez, Margarita Majem, Oscar Juan Vidal, Pilar Diz, Ana Royuela, Atocha Romero, Beatriz García-Peláez, Javier Perez Altozano, Gretel Benítez, Ana López Martín, Santiago Viteri, Ana Collazo, Eloisa Jantus-Lewintre, Mariano Provencio, Carlos Garcia Giron, Patricia Cruz, Ana Laura Ortega, Joaquim Bosch-Barrera, and R. Bernabé
- Subjects
0301 basic medicine ,Oncology ,Male ,Cancer Research ,cell lung cancer ,Intraclass correlation ,Biopsy ,DNA Mutational Analysis ,non-small cell lung cancer (NSCLC) ,Tyrosine kinase inhibitor ,Tyrosine-kinase inhibitor ,Cohort Studies ,circulating free DNA ,T790M ,0302 clinical medicine ,tyrosine kinase inhibitor ,Gene Frequency ,Osimertinib ,Prospective cohort study ,Càncer ,non‐small‐cell lung cancer ,Circulating free DNA ,RC254-282 ,Research Articles ,Sequence Deletion ,Aged, 80 and over ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,High-Throughput Nucleotide Sequencing ,non‐ ,General Medicine ,DNA, Neoplasm ,Exons ,Middle Aged ,ErbB Receptors ,Epidermal growth factor receptor (EGFR), NGS, Non-small cell lung cancer (NSCLC), PCR, Tyrosine Kinase Inhibitor (TKI), circulating free DNA (cfDNA), osimertinib ,030220 oncology & carcinogenesis ,osimertinib ,NGS ,Molecular Medicine ,small‐ ,Female ,Research Article ,Adult ,medicine.medical_specialty ,medicine.drug_class ,Sensitivity and Specificity ,03 medical and health sciences ,Predictive Value of Tests ,Internal medicine ,Genetics ,medicine ,Humans ,Aged ,non-small-cell lung cancer ,business.industry ,Epidermal growth factor receptor ,Non invasive ,epidermal growth factor receptor ,medicine.disease ,respiratory tract diseases ,030104 developmental biology ,Egfr mutation ,Pulmons ,Mutation ,business ,Non-small-cell lung cancer - Abstract
Plasma samples from 72 EGFR‐mutant advanced NSCLC patients, collected upon progression to first‐line TKI, were analyzed by seven methodologies (two NGS‐based methods, three high‐sensitivity PCR‐based platforms, and two FDA‐approved methods). Our study demonstrates a good to excellent agreement between methodologies and supports the use of liquid biopsies for therapy decision‐making., Several platforms for noninvasive EGFR testing are currently used in the clinical setting with sensitivities ranging from 30% to 100%. Prospective studies evaluating agreement and sources for discordant results remain lacking. Herein, seven methodologies including two next‐generation sequencing (NGS)‐based methods, three high‐sensitivity PCR‐based platforms, and two FDA‐approved methods were compared using 72 plasma samples, from EGFR‐mutant non‐small‐cell lung cancer (NSCLC) patients progressing on a first‐line tyrosine kinase inhibitor (TKI). NGS platforms as well as high‐sensitivity PCR‐based methodologies showed excellent agreement for EGFR‐sensitizing mutations (K = 0.80–0.89) and substantial agreement for T790M testing (K = 0.77 and 0.68, respectively). Mutant allele frequencies (MAFs) obtained by different quantitative methods showed an excellent reproducibility (intraclass correlation coefficients 0.86–0.98). Among other technical factors, discordant calls mostly occurred at mutant allele frequencies (MAFs) ≤ 0.5%. Agreement significantly improved when discarding samples with MAF ≤ 0.5%. EGFR mutations were detected at significantly lower MAFs in patients with brain metastases, suggesting that these patients risk for a false‐positive result. Our results support the use of liquid biopsies for noninvasive EGFR testing and highlight the need to systematically report MAFs.
- Published
- 2021