1. Comprehensive characterization of cell-free tumor DNA in plasma and urine of patients with renal tumors
- Author
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Christopher Smith, Katrin Heider, Tevita Aho, Maximilian Seles, Grant D. Stewart, Evis Sala, Johanna Field-Rayner, Irena Hudecova, Charles E. Massie, Anja L. Riediger, Tobias Klatte, Jonathan C. M. Wan, Ellen Heitzer, Florent Mouliere, Wendy N. Cooper, Antony C. P. Riddick, Matthew D. Eldridge, Dineika Chandrananda, James Morris, Tina Moser, Martin Pichler, Davina Gale, Nitzan Rosenfeld, Gabriel Wcislo, Anne Y. Warren, Samantha Perakis, Sarah J. Welsh, Tim Eisen, James N. Armitage, Stephan Ursprung, Thomas J. Mitchell, Andrea Ruiz-Valdepeñas, Athena Matakidou, Smith, Christopher G [0000-0001-7357-2737], Mouliere, Florent [0000-0001-7043-0514], Eldridge, Matthew [0000-0002-5799-8911], Rosenfeld, Nitzan [0000-0002-2825-4788], Heitzer, Ellen [0000-0002-8815-7859], Stewart, Grant D [0000-0003-3188-9140], Apollo - University of Cambridge Repository, Smith, Christopher G. [0000-0001-7357-2737], Stewart, Grant D. [0000-0003-3188-9140], and Pathology
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Oncology ,Male ,medicine.medical_specialty ,lcsh:QH426-470 ,Predictive Biomarker ,lcsh:Medicine ,Urine ,Disease ,Malignancy ,Circulating Tumor DNA ,03 medical and health sciences ,Genetic Heterogeneity ,0302 clinical medicine ,Text mining ,Internal medicine ,Genetics ,medicine ,Biomarkers, Tumor ,Humans ,Sampling (medicine) ,ddc:610 ,Stage (cooking) ,Molecular Biology ,Genetics (clinical) ,030304 developmental biology ,Aged ,Aged, 80 and over ,0303 health sciences ,Whole Genome Sequencing ,business.industry ,Research ,Personalized Analysis ,lcsh:R ,Cell-free Tumor Dna (Ctdna) ,Middle Aged ,medicine.disease ,Minimal residual disease ,Human genetics ,Kidney Neoplasms ,3. Good health ,lcsh:Genetics ,030220 oncology & carcinogenesis ,Renal Cancer ,Molecular Medicine ,Female ,Heterogeneity ,business - Abstract
BackgroundCell-free tumor-derived DNA (ctDNA) allows non-invasive monitoring of cancers, but its utility in renal cell cancer (RCC) has not been established.MethodsHere, a combination of untargeted and targeted sequencing methods, applied to two independent cohorts of patients (n = 91) with various renal tumor subtypes, were used to determine ctDNA content in plasma and urine.ResultsOur data revealed lower plasma ctDNA levels in RCC relative to other cancers of similar size and stage, with untargeted detection in 27.5% of patients from both cohorts. A sensitive personalized approach, applied to plasma and urine from select patients (n = 22) improved detection to ~ 50%, including in patients with early-stage disease and even benign lesions. Detection in plasma, but not urine, was more frequent amongst patients with larger tumors and in those patients with venous tumor thrombus.With data from one extensively characterized patient, we observed that plasma and, for the first time, urine ctDNA may better represent tumor heterogeneity than a single tissue biopsy. Furthermore, in a subset of patients (n = 16), longitudinal sampling revealed that ctDNA can track disease course and may pre-empt radiological identification of minimal residual disease or disease progression on systemic therapy. Additional datasets will be required to validate these findings.ConclusionsThese data highlight RCC as a ctDNA-low malignancy. The biological reasons for this are yet to be determined. Nonetheless, our findings indicate potential clinical utility in the management of patients with renal tumors, provided improvement in isolation and detection approaches.
- Published
- 2020
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