1. High-sensitivity microsatellite instability assessment for the detection of mismatch repair defects in normal tissue of biallelic germline mismatch repair mutation carriers
- Author
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Christian P. Kratz, Ugur Demirsoy, Anna Fernández, Elia Grau Garces, Angela Velasco, Núria Bonifaci, Victor Moreno, Michaela Nathrath, Hector Salvador, Conxi Lázaro, Marta Pineda, Manon Suerink, Joan Brunet, Benjamin Puliafito, Gabriel Capellá, Amedeo A. Azizi, Maribel González-Acosta, Daniel Rueda, Iman A. Ragab, Karin Dahan, Thomas Imschweiler, Danuta Januszkiewicz-Lewandowska, Benoit Florkin, Thorsten Rosenbaum, Hans-Jürgen Pander, Luis Ignacio Gonzalez-Granado, Rosa Ayala, Silvia Iglesias, Katharina Wimmer, Fátima Marín, Matilde Navarro, Francesc Balaguer, Pilar Guerra-García, Stephan Lobitz, and Tim Ripperger
- Subjects
Male ,0301 basic medicine ,Oncology ,ADN ,medicine.disease_cause ,DNA Mismatch Repair ,Germline ,0302 clinical medicine ,highly sensitive methodologies ,lynch syndrome ,Child ,Diagnostics ,Genetics (clinical) ,next generation sequencing ,Mutation ,Brain Neoplasms ,High-Throughput Nucleotide Sequencing ,Lynch syndrome ,ddc ,DNA-Binding Proteins ,MutS Homolog 2 Protein ,Child, Preschool ,030220 oncology & carcinogenesis ,Microsatellite ,Female ,Microsatellite Instability ,DNA mismatch repair ,Colorectal Neoplasms ,Adult ,Heterozygote ,medicine.medical_specialty ,congenital, hereditary, and neonatal diseases and abnormalities ,Adolescent ,Reparació de l'ADN ,DNA repair ,constitutional mismatch repair deficiency ,DNA sequencing ,Young Adult ,03 medical and health sciences ,Germline mutation ,Neoplastic Syndromes, Hereditary ,Càncer colorectal ,Internal medicine ,Genetics ,medicine ,Humans ,microsatellite instability ,neoplasms ,Germ-Line Mutation ,business.industry ,Infant ,Microsatellite instability ,nutritional and metabolic diseases ,DNA ,medicine.disease ,Colorectal Neoplasms, Hereditary Nonpolyposis ,Colorectal cancer ,digestive system diseases ,030104 developmental biology ,business - Abstract
IntroductionLynch syndrome (LS) and constitutional mismatch repair deficiency (CMMRD) are hereditary cancer syndromes associated with mismatch repair (MMR) deficiency. Tumours show microsatellite instability (MSI), also reported at low levels in non-neoplastic tissues. Our aim was to evaluate the performance of high-sensitivity MSI (hs-MSI) assessment for the identification of LS and CMMRD in non-neoplastic tissues.Materials and methodsBlood DNA samples from 131 individuals were grouped into three cohorts: baseline (22 controls), training (11 CMMRD, 48 LS and 15 controls) and validation (18 CMMRD and 18 controls). Custom next generation sequencing panel and bioinformatics pipeline were used to detect insertions and deletions in microsatellite markers. An hs-MSI score was calculated representing the percentage of unstable markers.ResultsThe hs-MSI score was significantly higher in CMMRD blood samples when compared with controls in the training cohort (pMSH2 carriers (n=5) compared with MSH6 carriers (n=15). The hs-MSI analysis did not detect a difference between LS and control blood samples (p=0.564).ConclusionsThe hs-MSI approach is a valuable tool for CMMRD diagnosis, especially in suspected patients harbouring MMR variants of unknown significance or non-detected biallelic germline mutations.
- Published
- 2020