1. Genomic serotyping, clinical manifestations, and antimicrobial resistance of nontyphoidal salmonella gastroenteritis in hospitalized children in Ho Chi Minh City, Vietnam
- Author
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Ha Thanh Tuyen, Hoang Le Phuc, Pham Van Minh, Alison E. Mather, Vu Thuy Duong, James Campbell, Nguyen Minh Ngoc, Stephen Baker, Lu Lan Vi, Tran Do Hoang Nhu, and Tran Thi Hong Chau
- Subjects
Microbiology (medical) ,Serotype ,nontyphoidal Salmonella ,medicine.medical_specialty ,Salmonella ,Microbial Sensitivity Tests ,medicine.disease_cause ,Microbiology ,03 medical and health sciences ,Antibiotic resistance ,Anti-Infective Agents ,multidrug resistance ,Drug Resistance, Multiple, Bacterial ,Epidemiology ,parasitic diseases ,Drug Resistance, Bacterial ,Medicine ,Humans ,antimicrobial resistance ,Serotyping ,Child ,030304 developmental biology ,0303 health sciences ,030306 microbiology ,business.industry ,pediatric diarrhea ,Dysentery ,Bacteriology ,Genomics ,respiratory system ,Antimicrobial ,medicine.disease ,3. Good health ,Anti-Bacterial Agents ,Gastroenteritis ,Multiple drug resistance ,nervous system ,Vietnam ,Etiology ,Salmonella serovars ,genomic serotyping ,business ,Child, Hospitalized ,circulatory and respiratory physiology - Abstract
Nontyphoidal Salmonella (NTS) are among the most common etiological agents of diarrheal diseases worldwide and have become the most commonly detected bacterial pathogen in children hospitalized with diarrhea in Vietnam. Aiming to better understand the epidemiology, serovar distribution, antimicrobial resistance (AMR), and clinical manifestation of NTS gastroenteritis in Vietnam, we conducted a clinical genomics investigation of NTS isolated from diarrheal children admitted to one of three tertiary hospitals in Ho Chi Minh City., Nontyphoidal Salmonella (NTS) are among the most common etiological agents of diarrheal diseases worldwide and have become the most commonly detected bacterial pathogen in children hospitalized with diarrhea in Vietnam. Aiming to better understand the epidemiology, serovar distribution, antimicrobial resistance (AMR), and clinical manifestation of NTS gastroenteritis in Vietnam, we conducted a clinical genomics investigation of NTS isolated from diarrheal children admitted to one of three tertiary hospitals in Ho Chi Minh City. Between May 2014 and April 2016, 3,166 children hospitalized with dysentery were recruited into the study; 478 (∼15%) children were found to be infected with NTS by stool culture. Molecular serotyping of the 450 generated genomes identified a diverse collection of serogroups (B, C1, C2 to C3, D1, E1, G, I, K, N, O, and Q); however, Salmonella enterica serovar Typhimurium was the most predominant serovar, accounting for 41.8% (188/450) of NTS isolates. We observed a high prevalence of AMR to first-line treatments recommended by WHO, and more than half (53.8%; 242/450) of NTS isolates were multidrug resistant (MDR; resistant to ≥3 antimicrobial classes). AMR gene detection positively correlated with phenotypic AMR testing, and resistance to empirical antimicrobials was associated with a significantly longer hospitalization (0.91 days; P = 0.04). Our work shows that genome sequencing is a powerful epidemiological tool to characterize the serovar diversity and AMR profiles in NTS. We propose a revaluation of empirical antimicrobials for dysenteric diarrhea and endorse the use of whole-genome sequencing for sustained surveillance of NTS internationally.
- Published
- 2021