1. Molecular Subtyping of Diffuse Large B-Cell Lymphoma Using a Novel Quantitative RT-PCR Assay
- Author
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Stephen P. Finn, Larry Bacon, Cliona Grant, Marcel Fontecha, Elisabeth Vandenberghe, Greg Lee, Fiona Quinn, Chris Santini, Cathal O'Brien, Richard Flavin, Patricia Gou, Rajiv Dua, Robert Ta, and Yu Chuan Tai
- Subjects
Male ,0301 basic medicine ,Oncology ,medicine.medical_specialty ,Microarray ,Real-Time Polymerase Chain Reaction ,Pathology and Forensic Medicine ,03 medical and health sciences ,0302 clinical medicine ,immune system diseases ,hemic and lymphatic diseases ,Internal medicine ,Antineoplastic Combined Chemotherapy Protocols ,Biomarkers, Tumor ,medicine ,Humans ,Genetic Testing ,Cyclophosphamide ,B cell ,Aged ,Aged, 80 and over ,business.industry ,Gene Expression Profiling ,Computational Biology ,Reproducibility of Results ,Germinal center ,Middle Aged ,Prognosis ,medicine.disease ,Immunohistochemistry ,Subtyping ,Lymphoma ,Treatment Outcome ,030104 developmental biology ,medicine.anatomical_structure ,Real-time polymerase chain reaction ,Doxorubicin ,Vincristine ,030220 oncology & carcinogenesis ,Prednisone ,Molecular Medicine ,Female ,Lymphoma, Large B-Cell, Diffuse ,Rituximab ,Transcriptome ,business ,Diffuse large B-cell lymphoma - Abstract
Diffuse large B-cell lymphoma (DLBCL) is a heterogeneous disease. Cell-of-origin classification in DLBCL has identified activated B cell (ABC) and germinal center B cell (GCB) as two major subtypes. Patients with the ABC subtype show reduced overall survival with standard therapies. Development of a quantitative RT-PCR-based lymphoma cell-of-origin (LCOO) assay to determine ABC, GCB, and unclassifiable subtypes in formalin-fixed, paraffin-embedded tissue (FFPET) DLBCL samples is reported. The LCOO classifier was trained on two DLBCL cohorts with validation performed by using an analytical grade assay in an independent cohort of 60 FFPET DLBCL samples. In the validation cohort, LCOO classification was 88.1%, 84.7%, and 84.7% concordant with microarray, immunohistochemistry (Hans classification), and Lymphoma Subtyping Test, respectively. Importantly, LCOO and Lymphoma Subtyping Test assays commonly assigned subtypes in 17 (94.4%) of 18 ABC samples and 34 (89.5%) of 38 GCB DLBCL samples from this cohort. Progression-free survival and overall survival of ABC and GCB subtypes, as classified by all platforms, were not significantly different in the validation cohort. LCOO classification using publicly available microarray gene expression from two independent data sets (414 fresh frozen and 474 FFPET DLBCL biopsies) revealed a significantly worse outcome for the ABC subtype compared with that of the GCB subtype. Thus, a sensitive, reproducible, LCOO assay developed on an easy to standardize quantitative RT-PCR platform may be an important clinical tool for DLBCL cell-of-origin classification.
- Published
- 2021