115 results on '"Richard Fox"'
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2. Candra Aditya’s Dewi pulang
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Richard Fox
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Cultural Studies ,Literature ,Linguistics and Language ,business.industry ,Anthropology ,Short Film ,Sociology ,business ,Social Sciences (miscellaneous) ,Language and Linguistics ,ADITYA ,Asian studies - Abstract
Short films have proven an important medium for social commentary in contemporary Indonesia. As an example of the genre, this special issue of BKI presents Candra Aditya’s (2016) short film, Dewi pulang (Dewi goes home), which follows a young Javanese woman as she travels from Jakarta to her natal home in Central Java to attend her father’s funeral. A critically annotated transcript and translation of the film’s dialogue is followed by four essays on various aspects of the film and a conversation with the filmmaker. Issues addressed include the changing nature of short films and ‘indie’ cinema in post-authoritarian Indonesia; the filmmaking practices specific to Dewi pulang; the interplay of absence and presence in Dewi’s movement between Jakarta and her natal home in Central Java; and the juxtaposition of Indonesian-, English- and Javanese-language dialogue, and the forms of sociality they respectively embody. Taken as a whole, the special issue offers at once a window onto short filmmaking in Indonesia and new primary materials for further analysis.
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- 2021
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3. Assessment, endoscopy, and treatment in patients with acute severe ulcerative colitis during the COVID-19 pandemic (PROTECT-ASUC): a multicentre, observational, case-control study
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Shaji Sebastian, Gareth J Walker, Nicholas A Kennedy, Thomas E Conley, Kamal V Patel, Sreedhar Subramanian, Alexandra J Kent, Jonathan P Segal, Matthew J Brookes, Neeraj Bhala, Haidee A Gonzalez, Lucy C Hicks, Shameer J Mehta, Christopher A Lamb, Shukri Abdale, Abdullah Abbasi, Anwar Abusrewil, Precious Aghimien, Saeed Ahmed, Akram Ali, Amjad Ali, Jad Alkhoury, Patrick Allen, Ammar Al-Rifaie, Richard Appleby, Ramesh Arasaradnam, Naila Arebi, Bradley Arms-Williams, Muteeb Ashraf, Andrea Au, Tamar Avades, Homira Ayubi, Saleha Azhar, Samantha Baillie, Sharmili Balarajah, Aaron Bancil, Abdul Basit, Murad Bayati, Andrew Bell, Alexander Berry, Shivaram Bhat, Joya Bhattacharyya, Sophia Bishop, Laura Blackmore, Ashley Bond, Simon Borg-Bartolo, Emma Botwright, Sonia Bouri, Stephen Boyle, Neil Bradley, Fiona Brailsford, Deborah Britton, Caitlin Brown, Rhys Butcher, Jeffrey Butterworth, Rachel Campbell, Roisin Campbell, Iona Campbell, Ruth Carr, Josiah Carter, Peter Cartlidge, Rajiv Chandy, Kelly Chatten, Rakesh Chaudhary, Desmond Chee, Jonathan Cheesbrough, Antonia Churchhouse, Sara Chughtai, Jennie Clough, Alexander Cole, Johannah Cook, Rachel Cooney, Sarah Cotton, Archibald Coulter, Tamsin Critchlow, Frederic Cuison, Chris Curran, Ana-Maria Darie, Robin Dart, Pantong Davwar, Kasamu Kabiru Dawa, Anjan Dhar, Shahida Din, Kok Leong Diong, Benjamin Disney, Emma Dooks, Louise Downey, Anita D'Souza, Lovesh Dyall, Ali El Rida El Masri, Mary Elias, Holli Evans, Richard Felwick, Michael Finegan, Paul Flanagan, Rishi Fofaria, Steven Chung Ming Fong, Richard Fox, Aileen Fraser, Christian Frunza, Alhassan Ghodeif, Nivedita Ghosh, Leah Gilroy, Larissa Good, John Gordon, Nicola Grasso, Aurelién M Guéroult, James Gulliver, Sarah Guthrie, Markus Gwiggner, Mina Hanna, Christopher Harlow, Wendy Harrison, Ailsa Hart, Barney Hawthorne, Julie Henshaw, Rosaleen Herdman-Grant, Patricia Hooper, Willow Howard, Nasir Hussain, Thomas Hutton, Aye Mya Htun, Peter Irving, Reema Jagdish, Anum Javed, Asima Javed, Nishani Jayasooriya, Matthew Johnson, Emma Johnston, Gareth-Rhys Jones, Cynthia Kanagasundaram, Fotein Karagkouni, Karen Kemp, Cheryl Kemp, Hesham Khalil, Najeebullah Khan, Mais Khasawneh, Bilal Khurshid, Andrew King, Beverley Kirkham, Fiona Kirkham, Flora Kokwaro, Mohamed Korani, Ioannis Koumoutsos, Aditi Kumar, Anish John Kuriakose Kuzhiyanjal, Martyn Lakeland, Sophie Laverick, Charlie Lees, Emma Levell, Scott Levison, Samuel Lim, Yuen-Hui Lim, Jimmy Limdi, James Oliver Lindsay, Jessica Lisle, Alan Lobo, Raphael Luber, Laura Lucaciu, Holly Lyne, Jonathan MacDonald, Aarani Mahalingam, Sara Mahgoub, Ridhima Malakar, Fenella Marley, Joy Mason, Zia Mazhar, Hannah McCaughan, Tracy Naughton, Adam McCulloch, Stuart McIlwaine, Nirmol Meah, Leila Mebarek, Mike Mendall, Radharetnas Meiarasu, Nasir Mir, Tilly Mills, Jentus Milton, Victoria Moffat, Gordon W Moran, Liam Morris, Gary Morrison, Graham Morrison, Robert Mulligan, Charles Murray, Jennifer Murray, Mutwakil Musharaf, Sally Myers, Pineshwari Naeck-Boolauky, Andres Naranjo, Janardhan Navaratnam, Deanna Naylor, Emma Nixon, Kirsty Nixon, Hesam Ahmadi Nooredinvand, Uche Nosegbe, Olaolu Olabintan, Elaine Ong Ming San, Comfort Okpeh, Hayley Owen, Ruth Owen, Christopher Palmer-Jones, Kalyan Peddada, Mohammad Peerally, Rebecca Perkins, Frank Phillips, Keith Pohl, Richard Pollok, Nick Powell, Farah Qayyum, Maria Qurashi, Mohammed Nabil Quraishi, Elizabeth Ratcliffe, Shellie Radford, Sohail Rahmany, Hanin Ramadan, Arvind Ramadas, Anne Reddington, Tom Riley, Peter Rimmer, Susan Ritchie, Jacqueline Roscoe, Konstantina Rosiou, Siobhan Rowland, Joseph Sabine, Aamir Saifuddin, Mark Samaan, Priya Sarkar, Shahzad Sarwar, Ayodele Sasegbon, Jayne Saunders, Gregory Sebepos-Rogers, John Paul Seenan, Christian Selinger, Solange Serna, Sonika Sethi, Matthew Shale, Richard Shenderey, Achuth Shenoy, Yousuf Sherifat, Roosey Sheth, Spyros Siakavellas, Rafid Sikafi, Amar Singh, Salil Singh, Updesh Singh, Ganesh Sivaji, Philip Smith, R Alexander Speight, Andy Spence, Catherine Stansfield, Helen Steed, Kishaani Suseeharan, Maria Tabuso, Donatas Taucius, Joanne Taylor, Amit Thakor, Tony Tham, Gill Townsend, Tristan Townsend, Thomas Troth, Ruth Tunney, Kelly Turner, Nosheen Umar, Vithushan Vakeeswarasarma, Ajay M Verma, Hazel Wallace, Katharina Wallis, Hannah Walton, Bo Wang, Eleanor Warner, Callum Watson, Eleanor Watson, Susie Wen, Monika Widlak, Maureen Williams, Amy Woods, Lisa Younge, and Mansoor Zafar
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medicine.medical_specialty ,Hepatology ,business.industry ,Incidence (epidemiology) ,Gastroenterology ,Case-control study ,medicine.disease ,Inflammatory bowel disease ,Ulcerative colitis ,03 medical and health sciences ,0302 clinical medicine ,030220 oncology & carcinogenesis ,Internal medicine ,Severity of illness ,Cohort ,Medicine ,030211 gastroenterology & hepatology ,business ,Historical Cohort ,Cohort study - Abstract
Summary Background There is a paucity of evidence to support safe and effective management of patients with acute severe ulcerative colitis during the COVID-19 pandemic. We sought to identify alterations to established conventional evidence-based management of acute severe ulcerative colitis during the early COVID-19 pandemic, the effect on outcomes, and any associations with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection and severe COVID-19 outcomes. Methods The PROTECT-ASUC study was a multicentre, observational, case-control study in 60 acute secondary care hospitals throughout the UK. We included adults (≥18 years) with either ulcerative colitis or inflammatory bowel disease unclassified, who presented with acute severe ulcerative colitis and fulfilled the Truelove and Witts criteria. Cases and controls were identified as either admitted or managed in emergency ambulatory care settings between March 1, 2020, and June 30, 2020 (COVID-19 pandemic period cohort), or between Jan 1, 2019, and June 30, 2019 (historical control cohort), respectively. The primary outcome was the proportion of patients with acute severe ulcerative colitis receiving rescue therapy (including primary induction) or colectomy. The study is registered with ClinicalTrials.gov , NCT04411784 . Findings We included 782 patients (398 in the pandemic period cohort and 384 in the historical control cohort) who met the Truelove and Witts criteria for acute severe ulcerative colitis. The proportion of patients receiving rescue therapy (including primary induction) or surgery was higher during the pandemic period than in the historical period (217 [55%] of 393 patients vs 159 [42%] of 380 patients; p=0·00024) and the time to rescue therapy was shorter in the pandemic cohort than in the historical cohort (p=0·0026). This difference was driven by a greater use of rescue and primary induction therapies with biologicals, ciclosporin, or tofacitinib in the COVID-19 pandemic period cohort than in the historical control period cohort (177 [46%] of 387 patients in the COVID-19 cohort vs 134 [36%] of 373 patients in the historical cohort; p=0·0064). During the pandemic, more patients received ambulatory (outpatient) intravenous steroids (51 [13%] of 385 patients vs 19 [5%] of 360 patients; p=0·00023). Fewer patients received thiopurines (29 [7%] of 398 patients vs 46 [12%] of 384; p=0·029) and 5-aminosalicylic acids (67 [17%] of 398 patients vs 98 [26%] of 384; p=0·0037) during the pandemic than in the historical control period. Colectomy rates were similar between the pandemic and historical control groups (64 [16%] of 389 vs 50 [13%] of 375; p=0·26); however, laparoscopic surgery was less frequently performed during the pandemic period (34 [53%] of 64] vs 38 [76%] of 50; p=0·018). Five (2%) of 253 patients tested positive for SARS-CoV-2 during hospital treatment. Two (2%) of 103 patients re-tested for SARS-CoV-2 during the 3-month follow-up were positive 5 days and 12 days, respectively, after discharge from index admission. Both recovered without serious outcomes. Interpretation The COVID-19 pandemic altered practice patterns of gastroenterologists and colorectal surgeons in the management of acute severe ulcerative colitis but was associated with similar outcomes to a historical cohort. Despite continued use of high-dose corticosteroids and biologicals, the incidence of COVID-19 within 3 months was low and not associated with adverse COVID-19 outcomes. Funding None.
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- 2021
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4. Pure Biologics – From a Bootstrapped Boutique CRO to an Integrated Drug Discovery Public Company
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Filip Jelen, Richard Fox, Maciej P. Mazurek, Przemysław M. Jurek, David Carter, Marta Wawrzyniak, Sabina Tabaczar, Sameer Deshmukh, and Tomasz Bakowski
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0301 basic medicine ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Drug discovery ,030220 oncology & carcinogenesis ,Business ,Marketing ,Listed company - Abstract
The present article is a case study of a Polish biopharmaceutical company, “Pure Biologics”. The company was founded in 2010 by a group of scientists and, over the last nine years, grew substantially from just a few individuals to nearly one hundred professionals. Initially, a privately-funded civil partnership, Pure Biologics, has been transformed into a publicly-traded company. Such a transformation has been possible not only because of the expertise and growing experience of corporate management, but also the specific economic environment and substantial public funding dedicated to innovative Small and Medium Enterprises (SMEs).
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- 2020
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5. Software Installation and Maintenance
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Richard Fox
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Engineering ,Installation ,business.industry ,Software engineering ,business - Published
- 2021
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6. How complete are insect inventories? An assessment of the british butterfly database highlighting the influence of dynamic distribution shifts on sampling completeness
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David Sánchez-Fernández, Richard Fox, Roger L. H. Dennis, Jorge M. Lobo, and Universidad de Murcia
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0106 biological sciences ,Completeness ,Range (biology) ,Biodiversity ,Distribution (economics) ,Climate change ,computer.software_genre ,010603 evolutionary biology ,01 natural sciences ,KnowBR ,Completeness (order theory) ,Data and Information ,Ecology, Evolution, Behavior and Systematics ,Nature and Landscape Conservation ,Ecology ,Database ,business.industry ,010604 marine biology & hydrobiology ,Great Britain ,Insect biodiversity ,Biodiversity inventory ,Geography ,Butterfly ,business ,Zoology ,computer ,Butterflies ,Global biodiversity - Abstract
Much recent scientific, media and public attention has focussed on the evidence for and consequences of declines in insect biodiversity. Reliable, complete inventories can be used to estimate insect trends accurately, but incomplete data may distort assessments of biodi-versity change. Thus, it is essential to understand the completeness of insect inventories. Assessing the database of Great Britain butterfly occurrences, likely the most complete database for any group of insects in the world (with 10,046,366 records for 58 butterfly species), we found that only 62% of the cells have complete inventories at the finest scale evaluated. The dynamic nature of butterfly distributions in response to climate change could explain this result, as the distribution of completeness values is related to the increas-ing occurrence of some species at higher latitudes as a consequence of recent range expan-sions. The exceptional quantity of information collected in Great Britain about this appeal-ing group of insects is insufficient to provide a complete picture. Consequently, we cannot expect to build complete inventories for less popular taxa, especially in less comprehen-sively sampled countries, and will require other techniques to understand the full extent of global biodiversity loss., D. S-F was supported by a postdoctoral grant from the University of Murcia (Spain).
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- 2021
7. Species traits influence the process of biodiversity inventorying: a case study using the British butterfly database
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Cayetano Gutiérrez-Cánovas, Richard Fox, Jorge M. Lobo, Roger L. H. Dennis, and David Sánchez-Fernández
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Attractiveness ,business.industry ,Ecology ,Process (engineering) ,Environmental resource management ,Biodiversity ,Temporal biases ,Ecology and Environment ,Detectability ,Geography ,Insects monitoring ,Insect Science ,Butterfly ,Biodiversity databases ,business ,Ecology, Evolution, Behavior and Systematics - Abstract
1. The description of how biological information is compiled over time is essential to detect temporal biases in biodiversity data that could directly influence the utility, comparability, and reliability of ecological and biogeographical studies. 2. We explore trends in species recording over time using one of the most spatially and temporally comprehensive country-level databases for any group of insects in the world – the database of butterfly occurrences from Great Britain. 3. Firstly, we used two crucial milestones (the year in which the taxonomic inventory is complete, i.e., when the last species was recorded, the year in which all species are recorded together for the first time) to delimit threemain phases in the process of biodiversity recording (taxonomic, faunistic and exhaustive phases). Secondly, we aimed to quantify how far species features (attractiveness and detectability) influence the process of recording through time. 4. During the first stage of biodiversity compilation,when the main aim is to complete the taxonomic inventory (taxonomic period), entomologists tend to record attractive species more frequently. However, once the inventory is complete, particularly in the period during whichmore spatially and temporally comprehensive information about species distribution is amassed (the exhaustive period), the recording pattern clearly changes to more detectable species. 5. Common, highly detectable species are undersampled in the first phase of biodiversity data compilation and oversampled in the final stages. Awareness of such temporal patterns in recording is necessary in order to correctly interpret and address bias in insect biodiversity trends
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- 2021
8. Endoscopic Stapedectomy: Collective Experience From a Large Australian Center
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Jonathan Kong, Alexander J. Saxby, Casey Vaughan, Nicholas Jufas, Richard Fox, and Nirmal Patel
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medicine.medical_specialty ,medicine.medical_treatment ,Stapes Surgery ,Endoscopic ear surgery ,medicine ,Humans ,Stapes ,Retrospective Studies ,medicine.diagnostic_test ,business.industry ,Australia ,Retrospective cohort study ,Stapedectomy ,Sensory Systems ,Endoscopy ,Surgery ,Dysgeusia ,Otosclerosis ,Treatment Outcome ,Otorhinolaryngology ,Neurology (clinical) ,medicine.symptom ,Complication ,business ,Tinnitus - Abstract
Introduction Endoscopic stapes surgery is a technically demanding procedure that is increasing in popularity. Surgical outcomes and complication rates have been demonstrated to be comparable to traditional microscopic techniques. The surgical outcomes for patients undergoing stapes surgery performed by the Sydney Endoscopic Ear Surgery Research Group are presented. Study design Retrospective review from prospectively gathered database. Setting Tertiary referral centers. Patients A retrospective case review of patients undergoing endoscopic stapes surgery performed by four surgeons between February 2015 and July 2019 was carried out. Sixty nine patients were identified, and assessed for demographics, functional results, and postoperative complications. Intervention Endoscopic stapedotomy. Main outcome measure Postoperative hearing results. Results Sixty eight of 69 patients (98.6%) achieved an air-bone gap (ABG) closure of less than 20 dB. Sixty of 69 patients (87%) achieved and ABG closure of less than 10 dB. The average improvement of the ABG over four frequencies achieved was 26.5 dB (range, 0-61). Postoperative complications were infrequent and self-limiting. Six patients experienced dysgeusia without obvious chorda tympani injury, four patients developed short lived vertigo, and two patients experienced tinnitus. Conclusions Endoscopically assisted stapes surgery represents a safe alternative to traditional microscopic techniques, with similar morbidity and audiological outcomes.
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- 2020
9. Introduction to Information Technology
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Richard Fox
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World Wide Web ,Engineering ,business.industry ,Information technology ,business - Published
- 2020
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10. Was the Sanskrit Bible the ‘English Bible-in-Disguise’?
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Richard Fox Young
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Cultural Studies ,Literature ,History ,business.industry ,media_common.quotation_subject ,Religious studies ,language ,Art ,Sanskrit ,business ,language.human_language ,media_common - Abstract
The essay explores Bible translation in early nineteenth-century India as a comprehensive and under-appreciated site for intercultural and interreligious interactions involving Christians and Hindus in a complex context of asymmetrical colonial relations. Postcolonial theorists are interrogated for theory-driven approaches that lopsidedly rely on English-language resources without taking into account the actual Indian-language artefacts of translation projects that came into being. Using a philological approach, the essay treats the Dharmapustaka, the Sanskrit Bible translated at the Serampore Baptist Mission, as a case study in ‘transculturation’—a multidimensional process catalyzed by an English missionary, William Carey, on the edges between India and Europe.
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- 2018
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11. Too Much Compromise in Today's CRISPR Pipelines
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Richard Fox
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Pace of innovation ,Gene Editing ,Engineering ,business.industry ,Compromise ,media_common.quotation_subject ,Field (Bourdieu) ,CRISPR-Associated Proteins ,Eukaryota ,ComputerApplications_COMPUTERSINOTHERSYSTEMS ,Data science ,Genome engineering ,ComputingMilieux_GENERAL ,Genetics ,CRISPR ,Animals ,Humans ,Clustered Regularly Interspaced Short Palindromic Repeats ,CRISPR-Cas Systems ,business ,Biotechnology ,media_common ,Perspectives - Abstract
CRISPR-based editing is a revolutionary tool for genome engineering and discovery. The pace of innovation in this young field is truly astonishing, and yet significant gaps remain in the set of capabilities offered. In particular, scalable (massively parallel and multiplex) editing is only available for a small variety of edit types, placing fundamental limits on the kinds of studies researchers can perform. Additional advancements are needed to realize the full potential of the technology.
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- 2019
12. Trial in Progress: The Randomized, Double-Blind, Placebo-Controlled Phase Ib CROSSWALK-a Trial Evaluating the Safety of Crovalimab for the Management of Acute Uncomplicated Vaso-Occlusive Episodes (VOEs) in Patients with Sickle Cell Disease (SCD)
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Caterina P. Minniti, Pablo Bartolucci, Lucia De Franceschi, Kenneth I. Ataga, A. Alexandrou, Himika Patel, Michael U. Callaghan, Jonathan Schimmel, Richard Fox, Alexandre Sostelly, and Diane-Charlotte Imbs
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medicine.medical_specialty ,business.industry ,Immunology ,Occlusive ,Cell Biology ,Hematology ,Disease ,Placebo ,Biochemistry ,Double blind ,Internal medicine ,Medicine ,In patient ,business - Abstract
Background SCD is a group of autosomal recessive red blood cell (RBC) disorders caused by a single point mutation in the β-globin gene, resulting in the production of hemoglobin S. Hemoglobin S polymerizes within RBCs under certain conditions, leading to the distortion of the RBC membrane and generation of dense and sickle RBCs. These pathologic RBCs contribute to microvascular occlusions in patients with SCD, which present as acute painful episodes called VOEs. Despite the majority of VOEs being managed at home, they remain the most common reason for emergency department (ED) visits and hospitalization among patients with SCD, with > 70% of ED visits and > 90% of hospital admissions for SCD being related to VOEs (Ballas et al. Am J Hematol 2005; Lanzkron et al. Am J Hematol 2010). One of the most severe complications of VOEs is acute chest syndrome, which is a leading cause of mortality among patients with VOEs (Vichinsky et al. N Engl J Med 2000; Bartolucci et al. eBioMedicine 2016). In the absence of targeted therapies for the management of VOEs in patients with SCD, treatment is currently limited to pain management, blood exchange transfusion (with the risk of complications), and other supportive care, representing a significant unmet medical need. Activation of the complement pathway has been described in patients with SCD at baseline, in acute pain crises, and in patients with delayed hemolytic transfusion reaction. Accumulating nonclinical data have suggested a multimodal role for complement dysregulation in the pathophysiology of SCD including vaso-occlusion, hemolysis, inflammation, thrombogenicity, endothelial activation, and end-organ damage (Roumenina et al. Am J Hematol 2020). Crovalimab is a novel, engineered, anti-complement C5 monoclonal antibody. In a Phase I/II study (Röth et al. Blood 2020) in patients with paroxysmal nocturnal hemoglobinuria, a complement-mediated disorder, crovalimab demonstrated rapid and sustained complement inhibition with promising efficacy and safety. Study Design and Methods CROSSWALK-a (NCT04912869) is a randomized, double-blind, placebo-controlled, Phase Ib study evaluating the safety of crovalimab for the management of acute uncomplicated VOEs in patients with SCD. Patients aged ≥ 12 years to ≤ 55 years, weighing ≥ 40 kg, and with a confirmed diagnosis of SCD homozygous hemoglobin S (HbSS) or sickle cell β 0 thalassemia (HbSβ 0) are eligible for the study (Figure). Patients must present with an acute uncomplicated VOE, requiring hospitalization and treatment with parenteral opioid analgesics. Vaccinations against Neisseria meningitidis, Hemophilus influenzae type B, and Streptococcus pneumoniae must be up to date. Eligible patients will be randomized 2:1 to receive either a single intravenous weight-based tiered dose of crovalimab or placebo. Patients in both study arms will continue to undergo pain management and receive other supportive care for their VOE and may also continue to receive ongoing concurrent SCD-directed therapies. Patients will be followed during the hospitalization until discharge and will continue to be followed post-discharge during an observational period. The maximum total study duration for an individual patient will be 12 weeks, which includes the hospitalization and observational periods. The primary objective is to evaluate the incidence and severity of adverse events according to National Cancer Institute Common Terminology Criteria for Adverse Events, Version 5.0, incidence and severity of infusion-related reactions and hypersensitivity, and change from baseline in targeted vital signs and clinical laboratory test results. Efficacy, pharmacokinetics, pharmacodynamics, immunogenicity, and exploratory biomarker endpoints will also be evaluated. Figure 1 Figure 1. Disclosures Bartolucci: F. Hoffmann-La Roche Ltd: Consultancy; Bluebird: Consultancy, Research Funding; Emmaus: Consultancy; Hemanext: Consultancy; Jazz Pharma: Other: Lecture fees; AGIOS: Consultancy; GBT: Consultancy; Novartis: Consultancy, Membership on an entity's Board of Directors or advisory committees, Other: Lecture fees, Steering committee, Research Funding; INNOVHEM: Other: Co-founder; Fabre Foundation: Research Funding; Addmedica: Consultancy, Other: Lecture fees, Research Funding. Ataga: Forma Therapeutics: Membership on an entity's Board of Directors or advisory committees; Novo Nordisk: Membership on an entity's Board of Directors or advisory committees; F. Hoffmann-La Roche Ltd: Consultancy; Novartis: Membership on an entity's Board of Directors or advisory committees; Agios Pharmaceuticals: Consultancy; Global Blood Therapeutics: Membership on an entity's Board of Directors or advisory committees. Callaghan: Alnylum: Current equity holder in publicly-traded company; Roche/Genentech: Consultancy, Speakers Bureau; Takeda: Consultancy, Speakers Bureau; Sanofi: Consultancy; Pfizer: Consultancy; Global Blood Therapeutics: Consultancy, Speakers Bureau; uniQure: Consultancy; Spark: Consultancy; Biomarin: Consultancy; Kedrion: Consultancy; Hema Biologics: Consultancy; Forma: Consultancy; Chesei: Consultancy; Agios Pharmaceuticals: Current Employment. De Franceschi: F. Hoffmann-La Roche Ltd: Consultancy. Minniti: F. Hoffmann-La Roche: Consultancy; Bluebird Bio: Other: Endpoint adjudicator; Forma: Consultancy; GBT: Consultancy; Novo Nordisk: Consultancy; CSL Behring: Other: Endpoint adjudicator; Novartis: Consultancy; Chiesi: Consultancy. Alexandrou: F. Hoffmann-La Roche Ltd: Consultancy, Current equity holder in publicly-traded company; Pfizer: Current equity holder in publicly-traded company. Imbs: F. Hoffmann-La Roche Ltd: Consultancy; Certara Inc.: Current Employment. Fox: Parexel International: Current Employment; Genentech, Inc.: Current Employment. Patel: Genentech, Inc.: Current Employment. Sostelly: F. Hoffmann-La Roche Ltd: Current Employment.
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- 2021
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13. Geomapping of Traumatic Spinal Cord Injury in Canada and Factors Related to Triage Pattern
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Christiana L. Cheng, Vanessa K. Noonan, Jayson Shurgold, Jason Chen, Carly S. Rivers, Hamid Khaleghi Hamedani, Suzanne Humphreys, Christopher S. Bailey, Najmedden Attabib, Jean-Marc Mac Thiong, Michael Goytan, Jerome Paquet, Richard Fox, Henry Ahn, Brian K. Kwon, Daryl R. Fourney, and null the RHSCIR Network
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Current time ,SCI center ,medicine.medical_specialty ,Potential impact ,geographic information science ,Traumatic spinal cord injury ,business.industry ,Trauma center ,trauma center ,030208 emergency & critical care medicine ,Original Articles ,medicine.disease ,Triage ,Geographic distribution ,03 medical and health sciences ,0302 clinical medicine ,acute SCI ,Physical therapy ,medicine ,Neurology (clinical) ,triage ,business ,Spinal cord injury ,030217 neurology & neurosurgery - Abstract
Current research indicates that more than half of patients with traumatic spinal cord injury (tSCI) experience delays in transfer and receive surgery >24 h post-injury. The objectives of this study were to determine the geographic distribution of tSCI in Canada relative to specialized treatment facilities, to assess clinical and logistical factors at play for indirect admissions to those facilities, and to explore differences in current time to admission and simulated scenarios in an attempt to assess the potential impact of changes to triage protocols. This study included data from 876 patients with tSCI enrolled in the prospectively collected acute Rick Hansen Spinal Cord Injury Registry (RHSCIR) between January 1, 2010 and December 31, 2013 for whom there were data on the location of their injury. Patients transported directly to a RHSCIR acute facility were more likely to reach the facility within 1 h of injury, whereas those transported indirectly were more likely to arrive 7 h later. Considering the injuries occurring within 40 km of a RHSCIR acute facility (n = 323), 249 patients (77%) were directly and 74 (23%) were indirectly admitted. In the multivariate regression analysis, only older age and longer road distance remained significantly associated with being indirectly admitted to a RHSCIR facility. Compared with the current status, the median time to admission decreased by 20% (3.5 h) in the 100% direct admission scenario, and increased by 102% (8.9 h) in the 100% indirect admission scenario.
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- 2017
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14. A national-scale assessment of climate change impacts on species: Assessing the balance of risks and opportunities for multiple taxa
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Matthew J. Carroll, Helen E. Roy, Olly Watts, Joanne Savage, Simon J. Duffield, Chris D. Thomas, James W. Pearce-Higgins, Bjorn Beckmann, Malcolm Ausden, Colin M. Beale, Humphrey Q. P. Crick, Nancy Ockendon, Tom H. Oliver, Christopher J. Wheatley, Dario Massimino, Peter G. Sutton, Tom August, Michael D. Morecroft, Richard B. Bradbury, Nicholas A. Macgregor, Colin J. McClean, Richard Fox, and Kevin J. Walker
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0106 biological sciences ,010504 meteorology & atmospheric sciences ,Range (biology) ,business.industry ,Ecology ,Environmental resource management ,Climate change ,010603 evolutionary biology ,01 natural sciences ,Geography ,Habitat ,Climate change scenario ,Temperate climate ,Biological dispersal ,sense organs ,skin and connective tissue diseases ,Risk assessment ,business ,Ecology, Evolution, Behavior and Systematics ,0105 earth and related environmental sciences ,Nature and Landscape Conservation ,Global biodiversity - Abstract
It is important for conservationists to be able to assess the risks that climate change poses to species, in order to inform decision making. Using standardised and repeatable methods, we present a national-scale assessment of the risks of range loss and opportunities for range expansion that climate change could pose for over 3000 plants and animals. Species were selected by their occurrence in England, the primary focus of the study, but climate change impacts were assessed across Great Britain, widening their geographical relevance. A basic risk assessment that compared projected future changes in potential range with recently observed changes classified 21% of species as being at high risk and 6% at medium risk of range loss under a B1 climate change scenario. A greater number of species were classified as having a medium (16%) or high (38%) opportunity to potentially expand their distribution. A more comprehensive assessment, incorporating additional ecological information, including potentially confounding and exacerbating factors (e.g. dispersal, habitat availability and other constraints), was applied to 402 species, of which 35% were at risk of range loss and 42% may expand their range extent. This study covers a temperate region with a significant proportion of species at their poleward range limit; the balance of risks and opportunities from climate change may be different elsewhere. The outcome of both risk assessments varied between taxonomic groups, with bryophytes and vascular plants containing the greatest proportion of species at risk from climate change. Upland habitats contained more species at risk than other habitats. Whilst the overall pattern was clear, confidence was generally low for individual assessments, with the exception of well-studied taxa such as birds. In response to climate change, nature conservation needs to plan for changing species distributions and an uncertain future.
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- 2017
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15. Anterior Surgical Fixation for Cervical Spine Flexion-Distraction Injuries
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Godefroy Hardy-St-Pierre, Andrew Nataraj, Godwin Choy, Mitchell P Wilson, Andrew S. Jack, and Richard Fox
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Adult ,Male ,medicine.medical_specialty ,Adolescent ,Radiography ,Kyphosis ,Neurosurgical Procedures ,Cohort Studies ,Young Adult ,03 medical and health sciences ,Fixation (surgical) ,0302 clinical medicine ,Distraction ,medicine ,Humans ,In patient ,030212 general & internal medicine ,Spinal cord injury ,Aged ,Retrospective Studies ,Aged, 80 and over ,business.industry ,Middle Aged ,medicine.disease ,Cervical spine ,Surgery ,Spinal Injuries ,Surgical Fixation Devices ,Cervical Vertebrae ,Female ,Neurology (clinical) ,Anterior approach ,business ,030217 neurology & neurosurgery - Abstract
Background Optimal surgical management for flexion-distraction cervical spine injuries remains controversial with current guidelines recommending anterior, posterior, and circumferential approaches. Here, we determined the incidence of and examined risk factors for clinical and radiographic failure in patients with 1-segment cervical distraction injuries having undergone anterior surgical fixation. Methods A retrospective review of 57 consecutive patients undergoing anterior fixation for subaxial flexion-distraction cervical injuries between 2008 and 2012 at our institution was performed. The primary outcome was the number of patients requiring additional surgical stabilization and/or radiographic failure. Data collected included age, gender, mechanism and level of injury, facet pattern injury, and vertebral end plate fracture. Results A total of 6 patients failed clinically and/or radiographically (11%). Four patients (7%) required additional posterior fixation. Although 2 other patients identified met radiographic failure criteria, at follow-up they had fused radiographically, were stable clinically, and no further treatment was pursued. Progressive kyphosis and translation were found to be significantly correlated with need for revision ( P P = 0.02, respectively). No differences were identified for all other clinical and radiologic factors assessed, including unilateral or bilateral facet injury, facet fracture, and end plate fracture. Conclusion This study contributes to the growing body of evidence supporting anterior fixation alone for flexion-distraction injuries. Findings suggest that current measurements of radiographic failure including segmental translation and kyphosis may predict radiographic failure and need for further surgical stabilization in some patients. Future follow-up studies assessing for independent risk factors for anterior approach failure with a validated predictive scoring model should be considered.
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- 2017
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16. A retrospective study of ultrasound and FNA cytology investigation of thyroid nodules: working towards combined risk stratification
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Roy Farrell, Richard Fox, Samit Unadkat, and Zi Wei Liu
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Adult ,Thyroid nodules ,medicine.medical_specialty ,Biopsy, Fine-Needle ,Decision Making ,030209 endocrinology & metabolism ,Malignancy ,Risk Assessment ,03 medical and health sciences ,0302 clinical medicine ,London ,medicine ,Humans ,Postoperative Period ,Thyroid Neoplasms ,Thyroid Nodule ,Thyroid cancer ,Grading (tumors) ,Aged ,Retrospective Studies ,Ultrasonography ,Aged, 80 and over ,medicine.diagnostic_test ,business.industry ,Thyroid ,Ultrasound ,Retrospective cohort study ,General Medicine ,Middle Aged ,medicine.disease ,medicine.anatomical_structure ,Fine-needle aspiration ,Otorhinolaryngology ,030220 oncology & carcinogenesis ,Radiology ,business - Abstract
The British Thyroid Association recommended in new guidelines on thyroid cancer treatment [Kwak et al. (Korean J Radiol 14:110-117, 2013)] that ultrasound grading of thyroid nodules should be incorporated into MDT management. A retrospective study was carried out to determine that the impact of US grading has had on MDT decision making in practice. The design used in the study is a retrospective review of case notes. The study was carried out in the hub hospital for thyroid cancer in the North west London Cancer network. We included consecutive patients referred to the regional thyroid multidisciplinary meeting between August 2014 and May 2015 for investigation of thyroid nodules. Data were collected on patient demographics, co-morbidity, thy grading, ultrasound grading, surgery, post-operative histology, and radioactive iodine treatment details. Accuracy of cytology and ultrasound in diagnosing malignancy was correlated to definitive histology. 99 patients with thyroid nodules were included in the study. 97% of patients had at least one fine needle aspiration and 75% had ultrasound grading. Thy3f (Bethesda IV) nodules were more likely to be carcinoma if associated with a U4 grade rather than U3 (67 vs 18%, p = 0.028). Ultrasound grading has recently been introduced to the standard practice in investigation of thyroid nodules. Further assessment of the accuracy of ultrasound grading in clinical practice may allow us to risk-stratify thy3a/thy3f (Bethesda III/IV) lesions and personalise treatment.
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- 2017
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17. P194 Epivin: a phase II double-blind randomised control trial investigating the use of epigallocatechin-3-gallate (veregen®, catephen®) vs placebo in the treatment of usual-typed vulval intraepithelial neoplasia
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Richard Fox, R Ganesan, D Slade, David Luesley, A Hughes, Shireen Velangi, B Kaur, and Jason Yap
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medicine.medical_specialty ,business.industry ,HPV infection ,Vulvar intraepithelial neoplasia ,medicine.disease ,Placebo ,Gastroenterology ,law.invention ,Double blind ,Lesion ,Clinical trial ,Randomized controlled trial ,law ,Internal medicine ,Toxicity ,medicine ,medicine.symptom ,business - Abstract
Introduction/Background We have shown that Epigallocatechin-3-gallate (EGCG) targets the human papillomavirus (HPV)-encoded E6 and E7 oncoproteins for degradation, resulting in epithelial cell growth inhibition in in vitro models. Recent clinical trials indicated that Veregen®, a topical ointment containing 55–72 mg of EGCG, is a safe and effective treatment for vulval warts, benign lesions caused by low-risk HPV strains. Based on our findings, we undertook a phase II randomised control trial (RCT) to evaluate if Veregen® is also effective in the treatment of usual-type vulvar intraepithelial neoplasia (uVIN), a pre-malignant lesion associated with high-risk HPV infection. Methodology Eligible patients were randomised to receive either Veregen® or placebo ointment (applied 3 times daily for 16 weeks), and were followed up at 2, 4, 8, 16, 32 and 52 weeks. Outcome measures, recorded at 16 and 32 weeks, were histological (HR) and clinical (CR) response (measured by ≥30% reduction in the sum of the longest diameter of all lesions when compared to baseline) and toxicity. The primary outcome, HR, required a difference in the number of responders ≥3 in favour of Veregen® to detect a difference of 20% between groups (10% for placebo and 30% for Veregen®), as per Jung’s design with type I, II errors ≤0.15. Results 26 patients were randomised, all 13 patients who received Veregen® showed either complete (n=5) or partial (n=8) CR. In placebo group, 3 patients had complete CR, 2 had partial CR and 6 had stable disease. Patients in the Veregen® group showed significant improvement in CR as compared to the placebo group (P=0.0026). There was no evidence of difference in HR and toxicity reported in both groups. Conclusion This study indicates that Veregen® application is safe and leads to at least a partial clinical resolution of uVIN lesions, thus warranting a phase III multi-centre RCT. Disclosure The study is funded by the National Institute for Health Research via the Research for Patient Benefit programme and Medigene AG supplied Veregen® and placebo.
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- 2019
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18. RBTT-06. TESSA JOWELL BRAIN MATRIX STUDY: A BRITISH FEASIBILITY STUDY OF MOLECULAR STRATIFICATION AND TARGETED THERAPY TO OPTIMIZE THE CLINICAL MANAGEMENT OF PATIENTS WITH GLIOMA
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Colin Watts, Victoria Wykes, Adam D. Waldman, Lucy F. Stead, Josh Savage, David Capper, Charles Swanton, John R. Apps, Susan C Short, Darren Hargrave, Kathreena M Kurian, Paul Brennan, Anthony J. Chalmers, Stuart Smith, Mariam Jamal-Hanjani, Gerard Thompson, Olaf Ansorg, Peter Buckle, Sarah Bowden, Richard Fox, Igor Vivanco, Keyoumars Ashkan, and Helen Bulbeck
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Oncology ,Cancer Research ,medicine.medical_specialty ,business.industry ,medicine.medical_treatment ,medicine.disease ,Precision medicine ,Randomized Brain Tumor Trials in Development ,Targeted therapy ,Tumor excision ,Internal medicine ,Glioma ,medicine ,Patient evaluation ,Neurology (clinical) ,business - Abstract
In 2016 there were 5250 brain cancer deaths in the UK. Standard treatment is surgical resection followed by chemo-radiotherapy. In most cases of diffuse glioma, complete tumour resection is not feasible. Many chemotherapy drugs have untested penetration through the blood brain barrier, potentially leading to sub-therapeutic concentrations in the tumour. There is need to refine current treatment strategies in relation to the understanding of tumour biology, and rapidly introduce and evaluate novel therapeutic approaches and agents through delivering rigorous clinical trials. The TESSA JOWELL BRAIN MATRIX Study will evaluate the feasibility of delivering precision medicine for brain cancer patients within the NHS. A multicentre, platform feasibility study of 1200 patients with diffuse glioma will build on the 100,000 genome project to develop and evaluate an infrastructure to collect and integrate: 1) real time comprehensive integrated molecular analysis, including whole genome sequencing and epigenetic classification; 2) serial sampling and annotation of tumours; 3) collection of matched clinical data; 4) assessment of patient quality of life; 5) centralised radiological review and response assessment as per RANO criteria. Once developed this will allow rapid introduction of therapeutic trials to specific patient groups. Secondary objectives include: understanding the association between extent of resection and molecular stratification to refine the role of surgery; optimisation and harmonisation of protocols to best collect, manage and store tissue, clinical data, and radiological images in order to provide a resource for researchers, both within and outside of the study. Improve patient recruitment by identifying and removing recruitment barriers and improve the information and consent processes for patients. Promote the development of a national network with expertise in brain cancer. Enrolment of the first patient is expected in late 2019. For further information, please contact the Brain Matrix Trial Office BrainMatrix@trials.bham.ac.uk.
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- 2019
19. A comprehensive evaluation of predictive performance of 33 species distribution models at species and community levels
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Janne Soininen, Miska Luoto, F. Guillaume Blanchet, Dominique Gravel, Jane Elith, Ian Renner, Miguel B. Araújo, Jarno Vanhatalo, Niklaus E. Zimmermann, Nicole A. Hill, Aleksi Lehikoinen, Barbara J. Anderson, Anna Norberg, Antoine Guisan, David I. Warton, Jani Anttila, Graeme Newell, William Godsoe, David B. Dunson, John Atle Kålås, Frederick R. Adler, Francis K. C. Hui, Nerea Abrego, Bob O'Hara, Janet Franklin, Heidi K. Mod, Robert D. Holt, Tad A. Dallas, Matt White, Richard Fox, Scott D. Foster, Magne Husby, Otso Ovaskainen, Wilfried Thuiller, Tomas Roslin, Research Foundation of the University of Helsinki, Academy of Finland, Research Council of Norway, Jane and Aatos Erkko Foundation, Ministerio de Ciencia, Innovación y Universidades (España), Organismal and Evolutionary Biology Research Programme, Spatial Foodweb Ecology Group, Department of Agricultural Sciences, Research Centre for Ecological Change, Helsinki Institute of Sustainability Science (HELSUS), Finnish Museum of Natural History, Department of Geosciences and Geography, BioGeoClimate Modelling Lab, Environmental and Ecological Statistics Group, Biostatistics Helsinki, Otso Ovaskainen / Principal Investigator, Laboratoire d'Ecologie Alpine (LECA ), and Université Savoie Mont Blanc (USMB [Université de Savoie] [Université de Chambéry])-Centre National de la Recherche Scientifique (CNRS)-Université Grenoble Alpes [2016-2019] (UGA [2016-2019])
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0106 biological sciences ,Computer science ,Calibration (statistics) ,RANGE SHIFTS ,Species distribution ,INCORPORATING SPATIAL AUTOCORRELATION ,computer.software_genre ,01 natural sciences ,Physical Geography and Environmental Geoscience ,Taxonomic rank ,ComputingMilieux_MISCELLANEOUS ,[STAT.AP]Statistics [stat]/Applications [stat.AP] ,species interactions ,Ecology ,NICHE ,Contrast (statistics) ,BIOTIC INTERACTIONS ,STATISTICAL-MODELS ,stacked species distribution model ,joint species distribution model ,[STAT]Statistics [stat] ,010601 ecology ,[SDE]Environmental Sciences ,predictive power ,[SDE.MCG]Environmental Sciences/Global Changes ,Context (language use) ,Machine learning ,Matematikk og Naturvitenskap: 400::Zoologiske og botaniske fag: 480::Økologi: 488 [VDP] ,Life Below Water ,Ecology, Evolution, Behavior and Systematics ,1172 Environmental sciences ,community modeling ,business.industry ,Generalized additive model ,model performance ,Statistical model ,environmental filtering ,prediction ,CLIMATE ,SIMULATED DATA ,Ecological Applications ,IMPROVE PREDICTION ,GENERALIZED ADDITIVE-MODELS ,community assembly ,Species richness ,Artificial intelligence ,NEURAL-NETWORKS ,[SDE.BE]Environmental Sciences/Biodiversity and Ecology ,business ,computer - Abstract
A large array of species distribution model (SDM) approaches has been developed for explaining and predicting the occurrences of individual species or species assemblages. Given the wealth of existing models, it is unclear which models perform best for interpolation or extrapolation of existing data sets, particularly when one is concerned with species assemblages. We compared the predictive performance of 33 variants of 15 widely applied and recently emerged SDMs in the context of multispecies data, including both joint SDMs that model multiple species together, and stacked SDMs that model each species individually combining the predictions afterward. We offer a comprehensive evaluation of these SDM approaches by examining their performance in predicting withheld empirical validation data of different sizes representing five different taxonomic groups, and for prediction tasks related to both interpolation and extrapolation. We measure predictive performance by 12 measures of accuracy, discrimination power, calibration, and precision of predictions, for the biological levels of species occurrence, species richness, and community composition. Our results show large variation among the models in their predictive performance, especially for communities comprising many species that are rare. The results do not reveal any major trade-offs among measures of model performance; the same models performed generally well in terms of accuracy, discrimination, and calibration, and for the biological levels of individual species, species richness, and community composition. In contrast, the models that gave the most precise predictions were not well calibrated, suggesting that poorly performing models can make overconfident predictions. However, none of the models performed well for all prediction tasks. As a general strategy, we therefore propose that researchers fit a small set of models showing complementary performance, and then apply a cross-validation procedure involving separate data to establish which of these models performs best for the goal of the study., This work was funded by the Research Foundation of the University of Helsinki (A. Norberg), the Academy of Finland (CoE grant 284601 and grant 309581 to O. Ovaskainen, grant 308651 to N. Abrego, grant 1275606 to A. Lehikoinen), the Research Council of Norway (CoE grant 223257), the Jane and Aatos Erkko Foundation, and the Ministry of Science, Innovation and Universities (grant CGL2015‐68438‐P to M. B. Araújo).
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- 2019
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20. Data and Picture Interpretation Stations Cases 1–42
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Joseph Manjaly, Peter Kullar, Alison Carter, and Richard Fox
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business.industry ,Interpretation (philosophy) ,Artificial intelligence ,business ,computer.software_genre ,computer ,Geology ,Natural language processing - Published
- 2019
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21. Using prognostic and predictive clinical features to make personalised survival prediction in advanced hepatocellular carcinoma patients undergoing sorafenib treatment
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Philip J. Johnson, Sarah Berhane, Richard Fox, Marta García-Fiñana, and Alessandro Cucchetti
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Adult ,Male ,Sorafenib ,Oncology ,Cancer Research ,medicine.medical_specialty ,Carcinoma, Hepatocellular ,Hepatocellular carcinoma ,Sorafenib treatment ,Antineoplastic Agents ,Placebo ,Article ,03 medical and health sciences ,chemistry.chemical_compound ,Targeted therapies ,0302 clinical medicine ,Internal medicine ,medicine ,Humans ,Time point ,Aged ,Creatinine ,business.industry ,Liver Neoplasms ,Middle Aged ,Prognosis ,medicine.disease ,Clinical trial ,chemistry ,030220 oncology & carcinogenesis ,Etiology ,Female ,business ,Liver cancer ,medicine.drug - Abstract
Background Sorafenib is the current standard of care for patients with advanced hepatocellular carcinoma (aHCC) and has been shown to improve survival by about 3 months compared to placebo. However, survival varies widely from under three months to over two years. The aim of this study was to build a statistical model that allows personalised survival prediction following sorafenib treatment. Methods We had access to 1130 patients undergoing sorafenib treatment for aHCC as part of the control arm for two phase III randomised clinical trials (RCTs). A multivariable model was built that predicts survival based on baseline clinical features. The statistical approach permits both group-level risk stratification and individual-level survival prediction at any given time point. The model was calibrated, and its discrimination assessed through Harrell’s c-index and Royston-Sauerbrei’s R2D. Results The variables influencing overall survival were vascular invasion, age, ECOG score, AFP, albumin, creatinine, AST, extra-hepatic spread and aetiology. The model-predicted survival very similar to that observed. The Harrell’s c-indices for training and validation sets were 0.72 and 0.70, respectively indicating good prediction. Conclusions Our model (‘PROSASH’) predicts patient survival using baseline clinical features. However, it will require further validation in a routine clinical practice setting.
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- 2019
22. Over-expression of DNMT3A predicts the risk of recurrent vulvar squamous cell carcinomas
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Ciaran B J Woodman, Merlin Pereira, David Luesley, Naheema S. Gordon, Raji Ganesan, Jason Yap, Sean Kehoe, Sarah Leonard, and Richard Fox
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Adult ,DNA (Cytosine-5-)-Methyltransferase 1 ,Risk ,0301 basic medicine ,Subset Analysis ,Oncology ,medicine.medical_specialty ,Pathology ,Methyltransferase ,Disease ,DNA Methyltransferase 3A ,03 medical and health sciences ,0302 clinical medicine ,CDKN2A ,Internal medicine ,medicine ,Humans ,DNA (Cytosine-5-)-Methyltransferases ,Stage (cooking) ,Aged ,Vulvar Neoplasms ,business.industry ,Obstetrics and Gynecology ,Cancer ,Middle Aged ,Vulvar cancer ,medicine.disease ,Immunohistochemistry ,030104 developmental biology ,030220 oncology & carcinogenesis ,embryonic structures ,DNA methylation ,Carcinoma, Squamous Cell ,Female ,Neoplasm Recurrence, Local ,business - Abstract
Objective Cancer initiation and progression has been linked to aberrant expression of the DNA methyltransferases (DNMT), the enzymes which establish and maintain DNA methylation patterns throughout the genome. In this study, we investigated if DNMT expression in vulvar squamous cell carcinomas (VSCC) was related to clinical outcome. Methods DNMT1, DNMT3A and DNMT3B expression was measured in a subset of cases drawn from a cohort of consecutive women treated for primary VSCC at the Pan Birmingham Gynaecological Cancer Centre between 2001 and 2008. Univariable and multivariable competing risk modelling was performed to identify whether DNMT expression was associated with local disease recurrence or disease morbidity. Results Over-expression of DNMT3A in the invasive component of the tumour was seen in 44% of tumours and was associated with an increased risk of local vulvar recurrence (LVR) (HR=4.51, p=0.012). This risk was found to increase further after adjustment for disease stage (HR=6.00, p=0.003) and groin node metastasis (HR=4.81, p=0.008). Over-expression of DNMT3B was associated with an increased risk of LVR (HR=5.69 p=0.03), however this ceased to be significant after adjustment for groin node metastasis. In a subset analysis, over-expression of DNMT3A was found to be significantly more common in VSCCs that stained negative for CDKN2A. Conclusions These observations are consistent with the possibility that epigenetic changes contribute to vulvar neoplasia and DNMT3A over-expression may be useful in predicting local disease recurrence.
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- 2016
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23. Adjacent Lichen Sclerosis predicts local recurrence and second field tumour in women with vulvar squamous cell carcinoma
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Christopher W. Dawson, Sarah Leonard, Ciaran B J Woodman, Sean Kehoe, Raji Ganesan, David Luesley, Jason Yap, and Richard Fox
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Adult ,Lichen Sclerosis ,medicine.medical_specialty ,Pathology ,Vulvar Squamous Cell Carcinoma ,Gastroenterology ,Vulva ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,medicine ,Humans ,Aged ,Aged, 80 and over ,Vulvar neoplasm ,030219 obstetrics & reproductive medicine ,Vulvar Neoplasms ,business.industry ,Incidence (epidemiology) ,Obstetrics and Gynecology ,Middle Aged ,Lichen Sclerosus et Atrophicus ,Increased risk ,medicine.anatomical_structure ,Oncology ,030220 oncology & carcinogenesis ,Cohort ,Carcinoma, Squamous Cell ,Population study ,Female ,Neoplasm Recurrence, Local ,business - Abstract
In this study, we investigated if the presence of histologically abnormal epithelium adjacent to the primary tumour influenced the frequency, timing, and topography of local vulvar recurrences (LVR) following treatment for squamous cell carcinoma of the vulva (VSCC).The study population comprised a cohort of 201 consecutive cases with incident VSCC. LVR were categorised as local relapses (LR) if they occurred2cm from the tumour margins, and as second field tumours (SFT) when ≥2cm from these margins. Univariable and multivariable competing risk modelling was performed to identify the prognostic factors associated with local disease recurrence.The characterization of the epithelium adjacent to the invasive component was possible for 199 (99.0%) patients. Of these, 171 (85.9%) were found to have intraepithelial abnormalities found adjacent to the surgical specimen. Multivariable analyses revealed that, following adjustment, Lichen Sclerosis (LS) was associated with an increase in the incidence of LVR, LR and SFT (SHRs: 3.4, 2.7 and 4.4, respectively). Although the incidence of LR and SFT in women with LS associated VSCC was similar, the peak incidence of SFT occurred more than two years before that of LR.Women with VSCC arising in a field of LS may continue to have an increased risk of developing LR and SFT for many years after resection of their primary tumour. Our study suggests that these women should be followed up more regularly so that LVR can be detected earlier; unless a more robust surveillance programme or chemopreventative treatments become available.
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- 2016
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24. Applying Context to Handwritten Character Recognition
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Richard Fox and Steven Brownfield
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Artificial neural network ,Computer science ,business.industry ,Context (language use) ,02 engineering and technology ,Machine learning ,computer.software_genre ,01 natural sciences ,Support vector machine ,ComputingMethodologies_PATTERNRECOGNITION ,0103 physical sciences ,0202 electrical engineering, electronic engineering, information engineering ,Domain knowledge ,020201 artificial intelligence & image processing ,Artificial intelligence ,010306 general physics ,business ,computer ,Character recognition - Abstract
Attempts to automate handwritten character recognition date back to the 1960s, but progress over the past two decades shows extremely accurate recognition of printed characters in English. The most common approaches used today apply a form of machine learning such as support vector machines (SVM) or neural networks. While highly accurate, these forms of machine learning do not attempt to apply higher-level knowledge to improve performance. This paper presents research applying SVM-trained recognizers supplemented with domain knowledge to provide top-down guidance in an attempt to improve recognition accuracy.
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- 2019
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25. The Information Content of Biodiversity Datasets is Affected by Patterns of Citizen Science Participation both Between and Within Projects
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Mark Logie, Michael J. O. Pocock, Tom August, and Richard Fox
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business.industry ,Environmental resource management ,Biodiversity ,General Medicine ,information content ,behaviour ,Geography ,motivation ,citizen science ,Citizen science ,participants ,business ,Content (Freudian dream analysis) ,biodiversity - Abstract
Citizen science is a powerful way to undertake monitoring of biodiversity, both for detecting rare events (e.g. invasive species, animal and plant health issues or presence of rare species) and assessing trends. However, in order to use citizen science effectively we need to understand better the patterns of people’s participation in projects considering variation in participation between citizen science approaches and individual variation in participation within a project. variation in participation between citizen science approaches and individual variation in participation within a project. Here, we particularly focus on the information content of the data collected through citizen science (although we recognise that citizen science has many other benefits, in addition to data collection). Firstly, we assessed participation in five projects for biodiversity monitoring in the UK, from mass participation to monitoring by volunteer experts, representing up to two thousand people per activity per year. We quantified the patterns of participation (in terms of retention of participants, spatial patterns of participation, and unevenness of contributions per participant - as in the 90:10 rule). We found that the data from mass participation projects were more strongly spatially correlated with human population density and retention of individuals was lower compared to projects targeted on those with existing interest in the subject. Secondly, we quantified the recording behaviour of recorders in a butterfly citizen science project. We developed this with four thousand users of a smartphone app designed for recording sightings of butterflies in the UK. The majority of these users were active for less than 10 days, a feature common to many citizen science projects. The users who engaged for longer produced most of the records for the project. We characterised their recording behaviour using 11 metrics that describe the variation in temporal and spatial recording behaviour as well as the data they recorded. Results showed that citizen scientists in this project fall on a continuum along 4 main axes describing their behaviour. We then used a 20-year butterfly dataset to assess the contribution of different types of recorders to the overall estimate of biodiversity trends and their precision. Overall, variation in participation, both between projects and between individuals within projects, contributes to variation in the information content (and hence the usefulness) of citizen science datasets. We show how different approaches can provide data to meet different needs for data users and how this understanding can be used to improve analyses of these data, allowing us to better design citizen science activities in the future.
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- 2019
26. Opinions of citizen scientists on open access to UK butterfly and moth occurrence data
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Nigel A. D. Bourn, Robert J. Wilson, Ilya M. D. Maclean, Richard Fox, Richard T. Heafield, and Emily B. Dennis
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0106 biological sciences ,media_common.quotation_subject ,Biodiversity ,Citizen science ,Biodiversity conservation ,010603 evolutionary biology ,01 natural sciences ,Order (exchange) ,Political science ,Ecology, Evolution, Behavior and Systematics ,Nature and Landscape Conservation ,media_common ,Ecology ,business.industry ,010604 marine biology & hydrobiology ,Open data ,Public relations ,Transparency (behavior) ,Democracy ,Lepidoptera ,restrict ,Threatened species ,Species occurrence ,business ,Volunteer attitudes - Abstract
[EN] Citizen science plays an increasingly important role in biodiversity research and conservation, enabling large volumes of data to be gathered across extensive spatial scales in a cost-effective manner. Open access increases the utility of such data, informing land-use decisions that may affect species persistence, enhancing transparency and encouraging proliferation of research applications. However, open access provision of recent, fine-scale spatial information on the locations of species may also prompt legitimate concerns among contributors regarding possible unintended negative conservation impacts, violations of privacy and commercial exploitation of volunteer-gathered data. Here we canvas the attitudes towards open access of contributors (104 regional co-ordinators and 510 recorders) of species occurrence records to two of the largest citizen science biodiversity recording schemes, the UK’s Butterflies for the New Millennium project and National Moth Recording Scheme. We find that while the majority of participants expressed support for open access in principle, most were more cautious in practice, preferring to limit the spatial resolution of records, particularly of threatened species, and restrict commercial reuse of data. In addition, citizen scientists’ opinions differed between UK countries, taxonomic groups and the level of involvement volunteers had in the schemes. In order to maintain successful and democratic citizen science schemes, organisers, funders and data users must understand and respect participants’ expectations and aspirations regarding open data while seeking to optimise data use for scientific and societal benefits.
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- 2019
27. Sex difference in patients with biliary tract cancer receiving chemotherapy: Post hoc analysis of ABC-01, -02, -03, -04, BILCAP
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Andre Lopes, Anna Dorothea Wagner, John N. Primrose, Richard Fox, John Bridgewater, Juan W. Valle, and Eiichiro Suzuki
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Oncology ,Cancer Research ,medicine.medical_specialty ,Chemotherapy ,Biliary tract cancer ,business.industry ,medicine.medical_treatment ,Internal medicine ,Toxicity ,Post-hoc analysis ,medicine ,In patient ,business - Abstract
517 Background: The relationship between toxicity from chemotherapy and clinical outcome in biliary tract cancer (BTC) is uncertain. Aim: This post hoc analysis evaluated differences by sex in the frequency of adverse events (AEs) and overall survival (OS) and its impact on progression-free survival (PFS)/recurrence-free survival (RFS) for BTC patients. Methods: Individual patient data were retrieved from ABC -01, -02, -03, -04, and BILCAP study. AEs were graded according to National Cancer Institute's Common Toxicity Criteria v 4.02 and odds ratios along with 95%CI and p-values derived from logistic regression were used to assess the effect of sex on the risk of AEs. Time to event outcomes were evaluated using Cox regression and plotted using Kaplan-Meier plots. All statistical tests were two-sided. Results: Overall 994 patients-data were examined: 86 in ABC-01, 324 in-02, 124 in -03, 13 in -04 and 447 in BILCAP. A total of 484 (49%) were males (M) and 510 (51%) were females (F). 770 patients were evaluable for AEs because a total of 224 patients in BILCAP study belonged to the observation group. Urinary tract infection (M, 1.6%; F, 5.5%), nausea (M, 50.7%; F, 69.9%), vomiting (M, 29.1%; F, 46.1%), alopecia (M, 11.3%; F, 27.3%), are dominant in F, hyperbilirubinaemia (M, 36.7%; F, 29.1%) and thrombocytopenia (M, 43.1%; F, 34.3%) and hiccups (M, 2.4%; F, 0.5%) are dominant in M at any grade. Vomiting (M, 3.5%; F, 7.0%) and fatigue (M, 4.0%; F, 8.5%) are higher in F than in M for grade 3-5. The median OS (M, 16.2 months (Mo); F, 17.5 Mo), PFS (M, 6.4 Mo; F, 6.5 Mo) and RFS (M, 20.8 Mo; F 19.4 Mo) were similar. Amongst the subgroup of patients with gallbladder, F achieved longer OS (M, 11.5 Mo; F 13.3 Mo, 0.73 (95%CI:0.54,0.99), p = 0.041) and RFS than M (M, 20.8 Mo; median PFS for F not reached, HR:0.52 (95%CI:0.27,1.02), p = 0.057). Conclusions: Females with BTC have tended to have more AEs, especially grade 3+. Although no difference was observed in OS, PFS, and RFS between males and females for the overall cohort of patients, females with gallbladder cancer had an improved OS and RFS compared with males. These findings suggest, in BTC, sex may play a role when designing clinical trials as well as in making treatment decisions.
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- 2020
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28. Genome-wide analysis of canine oral malignant melanoma metastasis-associated gene expression
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Jenny McKay, S. Murphy, Laura E. Selmic, Mike Starkey, S. Beaver, K. L. Bowlt Blacklock, P. Nelissen, Laura Blackwood, Z. Birand, Richard Fox, and Joyce Bass
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0301 basic medicine ,Male ,Receptors, CXCR4 ,DNA Repair ,DNA damage ,lcsh:Medicine ,Somatic hypermutation ,Metastasis ,03 medical and health sciences ,0302 clinical medicine ,Germline mutation ,Dogs ,Cytidine Deaminase ,medicine ,Animals ,DNA Breaks, Double-Stranded ,Dog Diseases ,Neoplasm Metastasis ,lcsh:Science ,Melanoma ,Regulation of gene expression ,Multidisciplinary ,business.industry ,Gene Expression Profiling ,lcsh:R ,Mouth Mucosa ,medicine.disease ,Chemokine CXCL12 ,Gene expression profiling ,Gene Expression Regulation, Neoplastic ,030104 developmental biology ,Cancer research ,lcsh:Q ,Female ,Mouth Neoplasms ,DNA microarray ,business ,030217 neurology & neurosurgery ,Genome-Wide Association Study - Abstract
Oral malignant melanoma (OMM) is the most common canine melanocytic neoplasm. Overlap between the somatic mutation profiles of canine OMM and human mucosal melanomas suggest a shared UV-independent molecular aetiology. In common with human mucosal melanomas, most canine OMM metastasise. There is no reliable means of predicting canine OMM metastasis, and systemic therapies for metastatic disease are largely palliative. Herein, we employed exon microarrays for comparative expression profiling of FFPE biopsies of 18 primary canine OMM that metastasised and 10 primary OMM that did not metastasise. Genes displaying metastasis-associated expression may be targets for anti-metastasis treatments, and biomarkers of OMM metastasis. Reduced expression of CXCL12 in the metastasising OMMs implies that the CXCR4/CXCL12 axis may be involved in OMM metastasis. Increased expression of APOBEC3A in the metastasising OMMs may indicate APOBEC3A-induced double-strand DNA breaks and pro-metastatic hypermutation. DNA double strand breakage triggers the DNA damage response network and two Fanconi anaemia DNA repair pathway members showed elevated expression in the metastasising OMMs. Cross-validation was employed to test a Linear Discriminant Analysis classifier based upon the RT-qPCR-measured expression levels of CXCL12, APOBEC3A and RPL29. Classification accuracies of 94% (metastasising OMMs) and 86% (non-metastasising OMMs) were estimated.
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- 2018
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29. STEREOTACTIC RADIOSURGERY FOR PATIENTS WITH MELANOMA AND MULTIPLE BRAIN METASTASES: EXPERIENCE DURING THE ERA OF IMMUNOTHERAPY AND TARGETED AGENTS
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Helen Benghiat, Garth Cruickshank, Paul Sanghera, Vijay Sawlani, Richard Fox, Neil Steven, S. Meade, and Andrew G. J. Hartley
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Cancer Research ,Systemic disease ,medicine.medical_specialty ,medicine.diagnostic_test ,business.industry ,Melanoma ,medicine.medical_treatment ,Magnetic resonance imaging ,Immunotherapy ,medicine.disease ,Radiosurgery ,Abstracts ,Oncology ,Cyberknife ,Medical imaging ,Medicine ,Neurology (clinical) ,Radiology ,business ,Neuroradiology - Abstract
There has been significant progress in the treatment of metastatic melanoma, however the impact of new agents on patients with brain metastases remains poorly understood. We report outcomes using SRS for patients with melanoma brain metastases exposed to BRAF targeted agents and/or immunotherapy. METHODS Consecutive patients with metastatic melanoma and brain metastases undergoing SRS without routine whole brain radiotherapy were identified. Selection was restricted to patients having systemic therapy within the same centre. Follow-up included 3monthly MRI scans. All patients were treated using Cyberknife. The target volume was neuroradiology approved without an uncertainty margin. A review of electronic records and follow up imaging was undertaken. Survival data were summarized using Kaplan-Meier curves and compared via a logrank test. RESULTS 49 patients with 148 target metastases were identified. Median number of lesions was 2 (range 1–12), median dose 21Gy, median volume 0.31cc (range 0.01–6.71cc) and 94% had extracranial disease at 2 or more sites. Three patients did not have follow up MRI. One patient required long-term steroids, 1 had transient symptomatic swelling at 11months and 3 patients experienced bleeds (1 symptomatic- post-SRS treated lesion). 12-month local disease free survival was 71% (CI 53, 84). Distant brain progression occurred in 28 patients (57%), with a median time to progression of 8months (95% CI 5, 15). Distant brain progression was less frequent in patients with a single metastasis (p=0.03). Median overall survival (OS) was 11months (95% CI 8, 17). Median OS was 20months (95% CI 5, NR), 10months (95% CI 4, 12) and 11months (95% CI 3, NR) for patients with 1, 2–4 and ≥ 5 metastases respectively (p=0.07). CONCLUSION Beyond a single metastasis, the number of brain metastases did not correlate with OS. Patients with multiple brain metastases and active systemic disease may benefit from SRS however prospective evaluation is recommended.
- Published
- 2018
30. Outcomes in Thoracolumbar Burst Fractures With a Thoracolumbar Injury Classification Score (TLICS) of 4 Treated With Surgery Versus Initial Conservative Management
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Frank Kortbeek, Andrew S. Jack, Ihsan Ihsanullah, Andrew Nataraj, Shawn Nomani, and Richard Fox
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Adult ,Male ,medicine.medical_specialty ,Visual analogue scale ,Conservative Treatment ,Thoracic Vertebrae ,03 medical and health sciences ,symbols.namesake ,0302 clinical medicine ,Burst fracture ,Medicine ,Humans ,Orthopedics and Sports Medicine ,Fisher's exact test ,Aged ,Retrospective Studies ,030222 orthopedics ,Univariate analysis ,Lumbar Vertebrae ,business.industry ,Retrospective cohort study ,Middle Aged ,medicine.disease ,Surgery ,Oswestry Disability Index ,symbols ,Injury Severity Score ,Regression Analysis ,Spinal Fractures ,Female ,Neurology (clinical) ,business ,030217 neurology & neurosurgery ,Cohort study - Abstract
Study design This is a single-center, retrospective, observational cohort study. Objective To determine whether surgery or nonoperative treatment has better clinical outcomes in neurologically intact patients with an intermediate severity thoracolumbar burst fracture. Summary of background data Optimal management, whether initial operative or nonoperative treatment, for thoracolumbar injury classification score (TLICS) 4 burst fractures remains controversial. Better insight into the treatment which affords patients a better clinical outcome could significantly affect patient care. Materials and methods This retrospective study included consecutive cases of TLICS 4 burst fracture patients from 2007 to 2013 and minimum 6-month follow-up. Potential confounders examined included age, sex, injury severity score, initial kyphotic angle, injured facets, and interspinous widening. Outcomes were determined by standardized questionnaires [Oswestry Disability Index (ODI), 12-item Short Form Physical Component Score (SF-12 PCS), and back pain Visual Analog Scale (VAS)] and analyzed using regression analysis. Results A total of 230 patients with burst fractures were identified, of which 67/230 (29%) were TLICS 4 and 47/67 (70%) had completed follow-up. No difference on univariate analysis was found between nonsurgical and surgical groups in mean ODI scores (P=0.27, t test), nor mean time to return to work (P=0.10, t test).Regarding outcomes, linear regression analysis revealed no association between having surgery and ODI (P=0.29), SF-12 PCS (P=0.59), or VAS (P=0.33). Furthermore, no difference was found between groups for employed patients working versus not working (P=0.09, the Fisher test), nor in mean time to return to work (P=0.30, Cox regression). Conclusions This is one of the largest studies examining TLICS 4 burst fracture patients, adjusting for both clinical and radiologic confounders and reporting patient outcomes with minimum 6-month follow-up. No differences were found in outcomes between patients treated either surgically or nonsurgically. Studies focusing on early postoperative differences or cost-effectiveness might help in decision making. Level of evidence Level III.
- Published
- 2018
31. Restorations with CAD/CAM technology
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Richard Fox, Geraldine Weinstein, and W. Stephen Howard
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Marketing ,Pharmacology ,Bonding process ,Organizational Behavior and Human Resource Management ,Engineering ,All ceramic ,business.industry ,Strategy and Management ,Pharmaceutical Science ,Mechanical engineering ,CAD ,Software ,visual_art ,Drug Discovery ,visual_art.visual_art_medium ,Ceramic ,business ,ComputingMethodologies_COMPUTERGRAPHICS - Abstract
Predictable all ceramic restorations utilizing computer-aided design/computer-aided milling have been made possible by following carefully outlined directions. A combined understanding of the capabilities of software, the milling unit, ceramic properties and the bonding process allows a dentist to create indirect restorations that exhibit desirable qualities.
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- 2018
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32. Accelerating Forward Engineering at Genome Scale
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Richard Fox
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Iterative and incremental development ,business.industry ,Computer science ,Supercharge ,Biomedical Engineering ,Genome scale ,Bioengineering ,Machine learning ,computer.software_genre ,Management of Technology and Innovation ,CRISPR ,Forward engineering ,Artificial intelligence ,business ,computer ,Biotechnology - Published
- 2019
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33. The effectiveness of protected areas in the conservation of species with changing geographical ranges
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Clive A. Walmsley, Jane K. Hill, Robert J. Wilson, Richard Fox, Nina J. O'Hanlon, Barbara J. Anderson, Deborah A. Procter, Chris D. Thomas, Phillipa K. Gillingham, Alison R. Holt, Nigel A. D. Bourn, Kevin J. Walker, Humphrey Q. P. Crick, John M. Baxter, David B. Roy, Tom H. Oliver, Richard A. Findon, Richard B. Bradbury, Jeremy A. Thomas, Jenny A. Hodgson, James W. Pearce-Higgins, Aldina M. A. Franco, and Michael D. Morecroft
- Subjects
Altitude ,Extinction ,Range (biology) ,business.industry ,Ecology ,Butterfly ,Biodiversity ,Climate change ,Distribution (economics) ,Umbrella species ,Biology ,business ,Ecology, Evolution, Behavior and Systematics - Abstract
A cornerstone of conservation is the designation and management of protected areas (PAs): locations often under conservation management containing species of conservation concern, where some development and other detrimental influences are prevented or mitigated. However, the value of PAs for conserving biodiversity in the long term has been questioned given that species are changing their distributions in response to climatic change. There is a concern that PAs may become climatically unsuitable for those species that they were designated to protect, and may not be located appropriately to receive newly-colonizing species for which the climate is improving. In the present study, we analyze fine-scale distribution data from detailed resurveys of seven butterfly and 11 bird species in Great Britain aiming to examine any effect of PA designation in preventing extinctions and promoting colonizations. We found a positive effect of PA designation on species' persistence at trailing-edge warm range margins, although with a decreased magnitude at higher latitudes and altitudes. In addition, colonizations by range expanding species were more likely to occur on PAs even after altitude and latitude were taken into account. PAs will therefore remain an important strategy for conservation. The potential for PA management to mitigate the effects of climatic change for retracting species deserves further investigation.
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- 2015
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34. Case Study: Transmission Control Protocol/Internet Protocol Tools
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Wei Hao and Richard Fox
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Transmission Control Protocol ,law ,business.industry ,Computer science ,Internet Protocol ,business ,law.invention ,Computer network - Published
- 2017
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35. Transmission Control Protocol/Internet Protocol
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Wei Hao and Richard Fox
- Subjects
Transmission Control Protocol ,business.industry ,Computer science ,law ,Internet Protocol ,business ,Computer network ,law.invention - Published
- 2017
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36. Case Study: Amazon Web Services
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Richard Fox and Wei Hao
- Subjects
World Wide Web ,Amazon web services ,Business - Published
- 2017
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37. Case Study: BIND and DHCP
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Richard Fox and Wei Hao
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Dynamic Host Configuration Protocol ,business.industry ,Computer science ,business ,Computer network - Published
- 2017
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38. Case Study: Building Local Area Networks
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Richard Fox and Wei Hao
- Subjects
Computer science ,business.industry ,Environmental resource management ,Local area network ,business - Published
- 2017
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39. Sorafenib in combination with transarterial chemoembolisation in patients with unresectable hepatocellular carcinoma (TACE 2): a randomised placebo-controlled, double-blind, phase 3 trial
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T.R. Jeffry Evans, Martin W. James, John N. Primrose, Nigel Hacking, Clive Stubbs, A. Watkinson, Tim Meyer, Lucy Wall, Daniel H. Palmer, Peter William Collins, Richard A Hubner, Philip J. Johnson, Paul Ross, David Cunningham, R Sturgess, Richard Fox, Yuk Ting Ma, and Deborah D. Stocken
- Subjects
Sorafenib ,Male ,Niacinamide ,medicine.medical_specialty ,Carcinoma, Hepatocellular ,Antineoplastic Agents ,Kaplan-Meier Estimate ,Placebo ,Gastroenterology ,Disease-Free Survival ,law.invention ,03 medical and health sciences ,0302 clinical medicine ,Randomized controlled trial ,Double-Blind Method ,law ,Internal medicine ,medicine ,Humans ,Adverse effect ,Protein Kinase Inhibitors ,Aged ,Intention-to-treat analysis ,Hepatology ,business.industry ,Phenylurea Compounds ,Hazard ratio ,Liver Neoplasms ,Middle Aged ,medicine.disease ,Combined Modality Therapy ,Embolization, Therapeutic ,Surgery ,Intention to Treat Analysis ,Clinical trial ,Treatment Outcome ,030220 oncology & carcinogenesis ,Hepatocellular carcinoma ,030211 gastroenterology & hepatology ,Female ,business ,medicine.drug - Abstract
BACKGROUND: Transarterial chemoembolisation (TACE) is the standard of care for patients with intermediate stage hepatocellular carcinoma, while the multikinase inhibitor sorafenib improves survival in patients with advanced disease. We aimed to determine whether TACE with sorafenib improves progression-free survival versus TACE with placebo.METHODS: We did a multicentre, randomised, placebo-controlled, phase 3 trial (TACE 2) in 20 hospitals in the UK for patients with unresectable, liver-confined hepatocellular carcinoma. Patients were eligible if they were at least aged 18 years, had Eastern Cooperative Oncology Group performance status of 1 or less, and had Child-Pugh A liver disease. Patients were randomised 1:1 by computerised minimisation algorithm to continuous oral sorafenib (400 mg twice-daily) or matching placebo combined with TACE using drug-eluting beads (DEB-TACE), which was given via the hepatic artery 2-5 weeks after randomisation and according to radiological response and patient tolerance thereafter. Patients were stratified according to randomising centre and serum α-fetoprotein concentration (FINDINGS: Between Nov 4, 2010, and Dec 7, 2015, the trial enrolled 399 patients and was terminated after a planned interim futility analysis. 86 patients failed screening and 313 remaining patients were randomly assigned: 157 to sorafenib and 156 to placebo. The median daily dose was 660 mg (IQR 389·2-800·0) sorafenib versus 800 mg (758·2-800·0) placebo, and median duration of therapy was 120·0 days (IQR 43·0-266·0) for sorafenib versus 162·0 days (70·0-323·5) for placebo. There was no evidence of difference in progression-free survival between the sorafenib group and the placebo group (hazard ratio [HR] 0·99 [95% CI 0·77-1·27], p=0·94); median progression-free survival was 238·0 days (95% CI 221·0-281·0) in the sorafenib group and 235·0 days (209·0-322·0) in the placebo group. The most common grade 3-4 adverse events were fatigue (29 [18%] of 157 patients in the sorafenib group vs 21 [13%] of 156 patients in the placebo group), abdominal pain (20 [13%] vs 12 [8%]), diarrhoea (16 [10%] vs four [3%]), gastrointestinal disorders (18 [11%] vs 12 [8%]), and hand-foot skin reaction (12 [8%] and none). At least one serious adverse event was reported in 65 (41%) of 157 patients in the sorafenib group and 50 (32%) of 156 in the placebo group, and 181 serious adverse events were reported in total, 95 (52%) in the sorafenib group and 86 (48%) in the placebo group. Three deaths occurred in each group that were attributed to DEB-TACE. Four deaths were attributed to study drug; three in the sorafenib group and one in the placebo group.INTERPRETATION: The addition of sorafenib to DEB-TACE does not improve progression-free survival in European patients with hepatocellular carcinoma. Alternative systemic therapies need to be assessed in combination with TACE to improve patient outcomes.FUNDING: Bayer PLC and BTG PLC.
- Published
- 2017
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40. Biomarker-based prognosis in hepatocellular carcinoma: validation and extension of the BALAD model
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H. Toyoda, Sarah Berhane, Philip J. Johnson, M Teng, Takashi Kumada, Chiaki Kagebayashi, Trevor Cox, Richard Fox, Toshifumi Tada, and Shinji Satomura
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Male ,Cancer Research ,medicine.medical_specialty ,Carcinoma, Hepatocellular ,AFP ,Machine learning ,computer.software_genre ,Japan ,Covariate ,Biomarkers, Tumor ,medicine ,Humans ,Protein Precursors ,Molecular Diagnostics ,albumin ,Serum Albumin ,Aged ,business.industry ,Liver Neoplasms ,biomarkers ,Bilirubin ,hepatocellular carcinoma ,Middle Aged ,DCP ,Prognosis ,medicine.disease ,United Kingdom ,Regression ,prognostic models ,Surgery ,AFP-L3 ,Oncology ,Hepatocellular carcinoma ,Cohort ,Parametric model ,Biomarker (medicine) ,Female ,Prothrombin ,Cancer biomarkers ,alpha-Fetoproteins ,Artificial intelligence ,business ,computer - Abstract
Background: The Japanese ‘BALAD' model offers the first objective, biomarker-based, tool for assessment of prognosis in hepatocellular carcinoma, but relies on dichotomisation of the constituent data, has not been externally validated, and cannot be applied to the individual patients. Methods: In this Japanese/UK collaboration, we replicated the original BALAD model on a UK cohort and then built a new model, BALAD-2, on the original raw Japanese data using variables in their continuous form. Regression analyses using flexible parametric models with fractional polynomials enabled fitting of appropriate baseline hazard functions and functional form of covariates. The resulting models were validated in the respective cohorts to measure the predictive performance. Results: The key prognostic features were confirmed to be Bilirubin and Albumin together with the serological cancer biomarkers, AFP-L3, AFP, and DCP. With appropriate recalibration, the model offered clinically relevant discrimination of prognosis in both the Japanese and UK data sets and accurately predicted patient-level survival. Conclusions: The original BALAD model has been validated in an international setting. The refined BALAD-2 model permits estimation of patient-level survival in UK and Japanese cohorts.
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- 2014
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41. Haematopoietic stem cells in cirrhosis – Authors' reply
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Philip N. Newsome, Stuart J. Forbes, and Richard Fox
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Liver Cirrhosis ,Cirrhosis ,Hepatology ,business.industry ,Hematopoietic Stem Cell Transplantation ,Gastroenterology ,Hepatitis C, Chronic ,Hematopoietic Stem Cells ,medicine.disease ,03 medical and health sciences ,Haematopoiesis ,0302 clinical medicine ,030220 oncology & carcinogenesis ,medicine ,Cancer research ,Humans ,030211 gastroenterology & hepatology ,Stem cell ,business - Published
- 2018
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42. A statistical model for survival risk prediction in patients with advanced hepatocellular carcinoma undergoing sorafenib treatment
- Author
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T. Yau, Philip J. Johnson, Stephen L. Chan, Sarah Berhane, and Richard Fox
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Oncology ,medicine.medical_specialty ,Hepatology ,business.industry ,Internal medicine ,Hepatocellular carcinoma ,medicine ,Sorafenib treatment ,In patient ,medicine.disease ,business - Published
- 2018
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43. Screening haematology patients for carbapenem-resistant Klebsiella pneumoniae
- Author
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Richard Fox, Donald Inverarity, Lindsay Mitchell, Linda Thomas, Elizabeth Kilgour, Caroline Dunn, and Pamela Paterson
- Subjects
Advanced and Specialized Nursing ,Carbapenem ,medicine.medical_specialty ,Imipenem ,biology ,business.industry ,Klebsiella pneumoniae ,medicine.drug_class ,Health Policy ,Antibiotics ,Public Health, Environmental and Occupational Health ,medicine.disease ,biology.organism_classification ,Meropenem ,chemistry.chemical_compound ,Infectious Diseases ,chemistry ,Internal medicine ,Medicine ,Agar diffusion test ,Klebsiella pneumonia ,business ,Ertapenem ,medicine.drug - Abstract
Following a cluster of haematology patients with carbapenem-resistant Klebsiella pneumoniae (CRKP) septicaemia, we initiated screening for rectal carriage of CRKP and multidrug-resistant K. pneumoniae (MDRKP) in this patient group. Haematology inpatients submit a rectal swab once weekly. When plated onto chromogenic Brilliance™ UTI Agar (Oxoid), and incubated overnight with a 10 µg ertapenem disc (Oxoid), K. pneumoniae is identified and semi-automated antibiotic susceptibility testing is performed using the Vitek 2 analyser (Biomerieux). When no zone of inhibition occurs, immediate intervention through patient isolation and enhanced environmental cleaning can be instigated to control further spread while empirical antibiotic prescribing is adapted to take account of identified resistances. Over 2 years, six patients with CRKP and 20 patients with MDRKP were identified. These isolates were resistant to first-line empirical treatment choices for neutropenic sepsis and presented a clinical risk of treatment failure for sepsis post cytotoxic chemotherapy. We describe how this rectal screening methodology was developed and how the results influenced appropriate antibiotic prescribing, patient placement in single rooms and the cleaning of the ward environment to prevent person-to-person transmission of MDRKP and CRKP.
- Published
- 2013
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44. Encountering a high jugular bulb during ear surgery
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T Tatla, R Nash, and Richard Fox
- Subjects
medicine.medical_specialty ,Perforation (oil well) ,Blood Loss, Surgical ,Venous haemorrhage ,03 medical and health sciences ,Myringoplasty ,0302 clinical medicine ,Jugular vein ,Temporal bone ,medicine ,Cerebrospinal Fluid Otorrhea ,Humans ,030223 otorhinolaryngology ,Tympanic Membrane Perforation ,business.industry ,General Medicine ,Middle Aged ,Hemostasis, Surgical ,Surgery ,Online Case Report ,Anesthesia ,Jugular bulb ,Female ,Jugular Veins ,business ,human activities ,030217 neurology & neurosurgery - Abstract
Encounters with jugular bulb abnormalities during ear surgery are a rare but recognised problem. A high riding jugular bulb is present in 10%–15% of patients and its variable position within the temporal bone can lead to problems as brisk venous haemorrhage can result if the bulb is inadvertently opened. The case of a 52-year-old woman with a central tympanic membrane perforation who underwent elective endaural myringoplasty and experienced brisk bleeding on raising the tympanomeatal flap is presented.
- Published
- 2017
45. Indirect Restorations with CAD/CAM Technology
- Author
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Geraldine Weinstein, W. Stephen Howard, and Richard Fox
- Subjects
Engineering ,business.industry ,0206 medical engineering ,Dentistry ,Tooth surface ,CAD ,030206 dentistry ,02 engineering and technology ,020601 biomedical engineering ,03 medical and health sciences ,0302 clinical medicine ,CEREC ,Lithium disilicate ,business ,Resin cement - Abstract
Computer-aided design/computer-aided milling (CAD/CAM) has grown in popularity over the last decade and is here to stay! The technology as a whole and the materials of choice are continuously evolving, allowing us to fabricate predictable restorations. Perhaps even more importantly, CAD/CAM assists us in becoming better dentists. When proper technique and attention to detail are observed in treatment planning, preparing teeth, and scanning and bonding restorations, we as dentists can predictably fabricate an esthetic and functional restoration for the patient. This chapter is written based on our experiences with Sirona’s CEREC and Planmeca’s E4D systems. The authors bring to light some basic principles that are applicable to any milled restoration as we expect more systems to emerge in the years to come.
- Published
- 2016
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46. Impact of sex on toxicity and outcome in the BILCAP study
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Anna Dorothea Wagner, Clive Stubbs, John N. Primrose, Richard Fox, and John Bridgewater
- Subjects
Oncology ,Cancer Research ,medicine.medical_specialty ,Biliary tract cancer ,business.industry ,Capecitabine ,Unexpected finding ,Internal medicine ,Toxicity ,medicine ,Adjuvant therapy ,business ,medicine.drug - Abstract
e16151Background: The BILCAP study established capecitabine (cape) as adjuvant therapy for patients with curatively resected biliary tract cancer. An unexpected finding was the apparent lack of ben...
- Published
- 2018
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47. Exploratory analyses of the BILCAP study
- Author
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John Bridgewater, Richard Fox, and John N. Primrose
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Cancer Research ,medicine.medical_specialty ,Standard of care ,Biliary tract cancer ,business.industry ,medicine.medical_treatment ,General surgery ,Capecitabine ,Oncology ,Curative surgery ,Medicine ,business ,Adjuvant ,medicine.drug - Abstract
e16132Background: The BILCAP study outcome placed adjuvant capecitabine (cape) as the standard of care following curative surgery for biliary tract cancer (BTC). We present exploratory analyses of ...
- Published
- 2018
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48. A Hybrid Approach to Automated Music Composition
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Richard Fox and Robert Crawford
- Subjects
Structure (mathematical logic) ,Multimedia ,Process (engineering) ,Computer science ,business.industry ,media_common.quotation_subject ,06 humanities and the arts ,Creativity ,computer.software_genre ,Hybrid approach ,01 natural sciences ,060404 music ,0103 physical sciences ,Genetic algorithm ,Musical composition ,Artificial intelligence ,Architecture ,business ,010301 acoustics ,computer ,0604 arts ,Randomness ,media_common - Abstract
Automated music composition typically employs genetic algorithms and/or stochastic methods using randomness in lieu of creativity. When properly guided these approaches can yield listenable music yet they lack another aspect of the music composition process: planning. Without planning, there may be no coherent structure or themes in the composed music. Planning can be employed to provide such structure by overseeing or controlling the genetic algorithm and/or stochastic methods in a hybrid architecture. In this paper, the system MAGE is presented which combines stochastic processing, genetic algorithms and planning to compose music that contains both structure and elements of randomness.
- Published
- 2016
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49. Comment on: 'Long-term impact of liver function on curative therapy for hepatocellular carcinoma: Application of the ALBI grade'
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Derek Manas, Nora Schweitzer, James O'Beirne, Takashi Kumada, Sarah Berhane, Winnie Yeo, Mercedes Iñarrairaegui, Stephen L. Chan, Frankie Mo, Charing C Chong, Paul B.S. Lai, Hidenori Toyoda, Philip J. Johnson, Arndt Vogel, Richard Fox, Helen L. Reeves, Anthony W.H. Chan, Bruno Sangro, Toshifumi Tada, Cucchetti, Alessandro, Cescon, Matteo, and Pinna, Antonio Daniele
- Subjects
Oncology ,Male ,Cancer Research ,medicine.medical_treatment ,Liver transplantation ,030230 surgery ,ALBI ,Gastroenterology ,Cohort Studies ,chemistry.chemical_compound ,0302 clinical medicine ,Liver Function Tests ,curative therapy ,Letter to the Editor ,medicine.diagnostic_test ,Medicine (all) ,Liver Neoplasms ,hepatocellular carcinoma ,Middle Aged ,Prognosis ,Survival Rate ,030220 oncology & carcinogenesis ,Hepatocellular carcinoma ,030211 gastroenterology & hepatology ,Female ,Liver cancer ,medicine.medical_specialty ,Carcinoma, Hepatocellular ,Bilirubin ,education ,03 medical and health sciences ,Text mining ,indocyanine green (ICG) ,Internal medicine ,medicine ,Carcinoma ,Hepatectomy ,Humans ,Survival rate ,Aged ,business.industry ,medicine.disease ,digestive system diseases ,Liver Transplantation ,Transplantation ,chemistry ,Clinical Study ,Liver function ,Neoplasm Grading ,business ,Liver function tests ,Follow-Up Studies - Abstract
Background: Application of curative therapy for hepatocellular carcinoma is crucially dependent on underlying liver function. Using the recently described ALBI grade we examined the long-term impact of liver dysfunction on survival of early-stage hepatocellular carcinoma (HCC) patients. Methods: This cohort study comprised 2559 HCC patients from different geographic regions, all treated with curative intent. We also examined the relation between indocyanine green (ICG) clearance and ALBI score. Survival was measured from the date of treatment to the date of death or last follow-up. Results: The ALBI score correlated well with ICG clearance. Among those undergoing surgical resection, patients with ALBI grade-1 (good liver function) survived approximately twice as long as those with ALBI grade-2 (less good liver function), although more than 90% of these patients were classified as Child–Pugh (C-P) grade A. In the cohort receiving ablative therapies, there was a similar difference in survival between ALBI grade-1 and grade-2. Cox regression analysis confirmed that the ALBI score along with age, gender, aetiology and tumour factors (AFP, tumour size/number and vascular invasion) independently influenced survival in HCC patients receiving curative treatments. Conclusions: The ALBI score represents a simple approach to the assessment of liver function in patients with HCC. After potentially curative therapy, those with ALBI grade-1 survived approximately twice as long as those with ALBI grade-2. These data suggest that ALBI grade-1 patients are appropriately treated with surgical resection whereas ALBI grade-2 patients may, where the option exists, be more suitable for liver transplantation or the less invasive curative ablative therapies.
- Published
- 2016
50. Government targets for protected area management: will threatened butterflies benefit?
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Richard Fox, David B. Roy, Tom Brereton, and Harriet Davies
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education.field_of_study ,Ecology ,business.industry ,Range (biology) ,Agroforestry ,Population ,Environmental resource management ,Biodiversity ,Spatial heterogeneity ,Geography ,Habitat ,Butterfly ,Threatened species ,education ,business ,Protected area ,Ecology, Evolution, Behavior and Systematics ,Nature and Landscape Conservation - Abstract
The UK Government has set targets for biodiversity conservation in England based on several indicators, including the status of protected areas [e.g. Sites of Special Scientific Interest (SSSIs)]. Specifically, the Government aims to achieve favourable condition [defined by Common Standards Monitoring (CSM)] on 95% by area of SSSIs by 2010. SSSIs are important for threatened butterflies and management to achieve favourable condition will play a key role in determining future population levels of these high-profile insects. Because only notified features of SSSIs are considered within CSM, we investigated the level of notification for three threatened butterflies. We found that these species were notified at only 15–33% of SSSIs where they occurred; though most site managers did manage for them under broader site conservation objectives. We investigated the relationship between SSSI condition status and population trend for eight butterfly species of conservation concern to assess the benefit to butterflies of sites attaining favourable condition status. The majority (80%) of population trends on SSSIs in favourable condition were positive, suggesting an overall beneficial impact of SSSI management. However, four of the eight species maintained lower populations at favourable condition SSSIs than at sites in one of the unfavourable condition categories. We suggest that current condition assessment based chiefly on notified vegetation communities lacks the sensitivity to identify the complex habitat conditions for these (mosaic) species. As butterflies are good indictors for a wide range of invertebrates, many species requiring fine-scale habitat heterogeneity may be at risk from the Government’s target.
- Published
- 2007
- Full Text
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