Search

Overall survival (OS) time prediction is one of the most common estimates of the prognosis of gliomas and is used to design an appropriate treatment planning. State-of-the-art (SOTA) methods for OS time prediction follow a pre-hoc approach that require computing the segmentation map of the glioma tumor sub-regions (necrotic, edema tumor, enhancing tumor) for estimating OS time. However, the training of the segmentation methods require ground truth segmentation labels which are tedious and expensive to obtain. Given that most of the large-scale data sets available from hospitals are unlikely to contain such precise segmentation, those SOTA methods have limited applicability. In this paper, we introduce a new post-hoc method for OS time prediction that does not require segmentation map annotation for training. Our model uses medical image and patient demographics (represented by age) as inputs to estimate the OS time and to estimate a saliency map that localizes the tumor as a way to explain the OS time prediction in a post-hoc manner. It is worth emphasizing that although our model can localize tumors, it uses only the ground truth OS time as training signal, i.e., no segmentation labels are needed. We evaluate our post-hoc method on the Multimodal Brain Tumor Segmentation Challenge (BraTS) 2019 data set and show that it achieves competitive results compared to pre-hoc methods with the advantage of not requiring segmentation labels for training., Comment: 5 pages, 2 figure

Dynamic optimisation occurs in a variety of real-world problems. To tackle these problems, evolutionary algorithms have been extensively used due to their effectiveness and minimum design effort. However, for dynamic problems, extra mechanisms are required on top of standard evolutionary algorithms. Among them, diversity mechanisms have proven to be competitive in handling dynamism, and recently, the use of neural networks have become popular for this purpose. Considering the complexity of using neural networks in the process compared to simple diversity mechanisms, we investigate whether they are competitive and the possibility of integrating them to improve the results. However, for a fair comparison, we need to consider the same time budget for each algorithm. Thus, instead of the usual number of fitness evaluations as the measure for the available time between changes, we use wall clock timing. The results show the significance of the improvement when integrating the neural network and diversity mechanisms depends on the type and the frequency of changes. Moreover, we observe that for differential evolution, having a proper diversity in population when using neural networks plays a key role in the neural network's ability to improve the results.

The deployment of automated systems to diagnose diseases from medical images is challenged by the requirement to localise the diagnosed diseases to justify or explain the classification decision. This requirement is hard to fulfil because most of the training sets available to develop these systems only contain global annotations, making the localisation of diseases a weakly supervised approach. The main methods designed for weakly supervised disease classification and localisation rely on saliency or attention maps that are not specifically trained for localisation, or on region proposals that can not be refined to produce accurate detections. In this paper, we introduce a new model that combines region proposal and saliency detection to overcome both limitations for weakly supervised disease classification and localisation. Using the ChestX-ray14 data set, we show that our proposed model establishes the new state-of-the-art for weakly-supervised disease diagnosis and localisation. We make our code available at https://github.com/renato145/RpSalWeaklyDet.

Tumor-infiltrating lymphocytes (TILs) have received considerable attention in recent years, as evidence suggests they are related to cancer prognosis. Distribution and localization of these and other types of immune cells are of special interest for pathologists, and frequently involve manual examination on Immunohistochemistry (IHC) Images. We present a model based on Deep Convolutional Neural Networks for Automatic lymphocyte detection on IHC images of gastric cancer. The dataset created as part of this work is publicly available for future research.