1. NUDT15 variants confer high incidence of second malignancies in children with acute lymphoblastic leukemia
- Author
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Takako Yoshioka, Tomoko Kawai, Yuki Arakawa, Shinichi Tsujimoto, Chikako Kiyotani, Jun J. Yang, Mika Sakamoto, Daisuke Tomizawa, Akira Ohara, Keisuke Ishiwata, Akiko Inoue, Yoko Shioda, Hiroko Ogata-Kawata, Ryota Shirai, Keita Terashima, Masanori Yoshida, Tomoo Osumi, Sae Ishimaru, Wentao Yang, Toshihiko Imamura, Shuichi Ito, Takaya Moriyama, Aiko Sato-Otsubo, Kaoru Yoshida, Yuki Yuza, Kazuhiko Nakabayashi, Akitoshi Kinoshita, Kohji Okamura, Akira Niwa, Yozo Nakazawa, Kenichiro Hata, Hiroyuki Takahashi, Daisuke Hasegawa, Masashi Sanada, Kentaro Ohki, Motohiro Kato, Nobutaka Kiyokawa, Katsuyoshi Koh, Kimikazu Matsumoto, Moeko Hino, Seishi Ogawa, Atsushi Manabe, Harumi Kakuda, Nao Takasugi, Rina Nishii, Mayuko Okuya, and Masatoshi Takagi
- Subjects
Oncology ,medicine.medical_specialty ,education.field_of_study ,Antimetabolites, Antineoplastic ,Childhood leukemia ,business.industry ,Incidence ,Population ,Neoplasms, Second Primary ,Hematology ,Precursor Cell Lymphoblastic Leukemia-Lymphoma ,medicine.disease ,Germline ,Lymphoma ,Internal medicine ,Genetic variation ,Cohort ,medicine ,Humans ,Cumulative incidence ,Pyrophosphatases ,business ,education ,Child ,Gene - Abstract
The effect of genetic variation on second malignant neoplasms (SMNs) remains unclear. First, we identified the pathogenic germline variants in cancer-predisposing genes among 15 children with SMNs after childhood leukemia/lymphoma using whole-exome sequencing. Because the prevalence was low, we focused on the association between SMNs and NUDT15 in primary acute lymphoblastic leukemia (ALL) cases. NUDT15 is one of the 6-mercaptopurine (6-MP) metabolic genes, and its variants are common in East Asian individuals. The prevalence of NUDT15 hypomorphic variants was higher in patients with SMNs (n = 14; 42.9%) than in the general population in the gnomAD database (19.7%; P = .042). In the validation study with a cohort of 438 unselected patients with ALL, the cumulative incidence of SMNs was significantly higher among those with (3.0%; 95% confidence interval [CI], 0.6% to 9.4%) than among those without NUDT15 variants (0.3%; 95% CI, 0.0% to 1.5%; P = .045). The 6-MP dose administered to patients with ALL with a NUDT15 variant was higher than that given to those without SMNs (P = .045). The 6-MP–related mutational signature was observed in SMN specimens after 6-MP exposure. In cells exposed to 6-MP, a higher level of 6-MP induced DNA damage in NUDT15-knockdown induced pluripotent stem cells. Our study indicates that NUDT15 variants may confer a risk of SMNs after treatment with 6-MP in patients with ALL.
- Published
- 2021