1. Construction and Validation of a Protein Prognostic Model for Lung Squamous Cell Carcinoma
- Author
-
Mingmei Guan, Haibo Mao, Chengyin Weng, Yong Wu, Xisheng Fang, Baoxiu Li, Xia Liu, Lin Lu, and Guolong Liu
- Subjects
Male ,Oncology ,medicine.medical_specialty ,Lung Neoplasms ,Multivariate analysis ,Protein Array Analysis ,Human Protein Atlas ,Datasets as Topic ,The Cancer Genome Atlas ,Kaplan-Meier Estimate ,Risk Assessment ,Cohort Studies ,03 medical and health sciences ,0302 clinical medicine ,Cell Line, Tumor ,Internal medicine ,Lung squamous cell carcinoma ,Biomarkers, Tumor ,medicine ,Humans ,Overall survival ,Lung cancer ,Survival analysis ,Neoplasm Staging ,Protein prognostic risk model ,Receiver operating characteristic ,business.industry ,Gene Expression Profiling ,The Cancer Protein Atlas ,Univariate ,Cancer ,General Medicine ,Prognosis ,medicine.disease ,Gene Expression Regulation, Neoplastic ,ROC Curve ,Carcinoma, Squamous Cell ,Adenocarcinoma ,Female ,030211 gastroenterology & hepatology ,business ,Research Paper - Abstract
Lung squamous cell carcinoma (LUSCC), as the major type of lung cancer, has high morbidity and mortality rates. The prognostic markers for LUSCC are much fewer than lung adenocarcinoma. Besides, protein biomarkers have advantages of economy, accuracy and stability. The aim of this study was to construct a protein prognostic model for LUSCC. The protein expression data of LUSCC were downloaded from The Cancer Protein Atlas (TCPA) database. Clinical data of LUSCC patients were downloaded from The Cancer Genome Atlas (TCGA) database. A total of 237 proteins were identified from 325 cases of LUSCC patients based on the TCPA and TCGA database. According to Kaplan-Meier survival analysis, univariate and multivariate Cox analysis, a prognostic prediction model was established which was consisted of 6 proteins (CHK1_pS345, CHK2, IRS1, PAXILLIN, BRCA2 and BRAF_pS445). After calculating the risk values of each patient according to the coefficient of each protein in the risk model, the LUSCC patients were divided into high risk group and low risk group. The survival analysis demonstrated that there was significant difference between these two groups (p= 4.877e-05). The area under the curve (AUC) value of the receiver operating characteristic (ROC) curve was 0.699, which suggesting that the prognostic risk model could effectively predict the survival of LUSCC patients. Univariate and multivariate analysis indicated that this prognostic model could be used as independent prognosis factors for LUSCC patients. Proteins co-expression analysis showed that there were 21 proteins co-expressed with the proteins in the risk model. In conclusion, our study constructed a protein prognostic model, which could effectively predict the prognosis of LUSCC patients.
- Published
- 2020
- Full Text
- View/download PDF