Search

Background and Objective: Accurate segmentation of breast mass in 3D automated breast ultrasound (ABUS) images plays an important role in qualitative and quantitative ABUS image analysis. Yet this task is challenging due to the low signal to noise ratio and serious artifacts in ABUS images, the large shape and size variation of breast masses, as well as the small training dataset compared with natural images. The purpose of this study is to address these difficulties by designing a dilated densely connected U-Net (D 2 U-Net) together with an uncertainty focus loss., Methods: A lightweight yet effective densely connected segmentation network is constructed to extensively explore feature representations in the small ABUS dataset. In order to deal with the high variation in shape and size of breast masses, a set of hybrid dilated convolutions is integrated into the dense blocks of the D 2 U-Net. We further suggest an uncertainty focus loss to put more attention on unreliable network predictions, especially the ambiguous mass boundaries caused by low signal to noise ratio and artifacts. Our segmentation algorithm is evaluated on an ABUS dataset of 170 volumes from 107 patients. Ablation analysis and comparison with existing methods are conduct to verify the effectiveness of the proposed method., Results: Experiment results demonstrate that the proposed algorithm outperforms existing methods on 3D ABUS mass segmentation tasks, with Dice similarity coefficient, Jaccard index and 95% Hausdorff distance of 69.02%, 56.61% and 4.92 mm, respectively., Conclusions: The proposed method is effective in segmenting breast masses on our small ABUS dataset, especially breast masses with large shape and size variations., Competing Interests: Declaration of Competing Interest We declare that we do not have any commercial or associative interest that represents a conflict of interest in connection with the work submitted., (Copyright © 2021 Elsevier B.V. All rights reserved.)

Tumor segmentation in 3D automated breast ultrasound (ABUS) plays an important role in breast disease diagnosis and surgical planning. However, automatic segmentation of tumors in 3D ABUS images is still challenging, due to the large tumor shape and size variations, and uncertain tumor locations among patients. In this paper, we develop a novel cross-model attention-guided tumor segmentation network with a hybrid loss for 3D ABUS images. Specifically, we incorporate the tumor location into a segmentation network by combining an improved 3D Mask R-CNN head into V-Net as an end-to-end architecture. Furthermore, we introduce a cross-model attention mechanism that is able to aggregate the segmentation probability map from the improved 3D Mask R-CNN to each feature extraction level in the V-Net. Then, we design a hybrid loss to balance the contribution of each part in the proposed cross-model segmentation network. We conduct extensive experiments on 170 3D ABUS from 107 patients. Experimental results show that our method outperforms other state-of-the-art methods, by achieving the Dice similarity coefficient (DSC) of 64.57%, Jaccard coefficient (JC) of 53.39%, recall (REC) of 64.43%, precision (PRE) of 74.51%, 95th Hausdorff distance (95HD) of 11.91 mm, and average surface distance (ASD) of 4.63 mm. Our code will be available online (https://github.com/zhouyuegithub/CMVNet). [ABSTRACT FROM AUTHOR]

Accurate breast mass segmentation of automated breast ultrasound (ABUS) images plays a crucial role in 3D breast reconstruction which can assist radiologists in surgery planning. Although the convolutional neural network has great potential for breast mass segmentation due to the remarkable progress of deep learning, the lack of annotated data limits the performance of deep CNNs. In this article, we present an uncertainty aware temporal ensembling (UATE) model for semi-supervised ABUS mass segmentation. Specifically, a temporal ensembling segmentation (TEs) model is designed to segment breast mass using a few labeled images and a large number of unlabeled images. Considering the network output contains correct predictions and unreliable predictions, equally treating each prediction in pseudo label update and loss calculation may degrade the network performance. To alleviate this problem, the uncertainty map is estimated for each image. Then an adaptive ensembling momentum map and an uncertainty aware unsupervised loss are designed and integrated with TEs model. The effectiveness of the proposed UATE model is mainly verified on an ABUS dataset of 107 patients with 170 volumes, including 13382 2D labeled slices. The Jaccard index (JI), Dice similarity coefficient (DSC), pixel-wise accuracy (AC) and Hausdorff distance (HD) of the proposed method on testing set are 63.65%, 74.25%, 99.21% and 3.81mm respectively. Experimental results demonstrate that our semi-supervised method outperforms the fully supervised method, and get a promising result compared with existing semi-supervised methods. [ABSTRACT FROM AUTHOR]

Accurate segmentation of breast mass in 3D automated breast ultrasound (ABUS) plays an important role in breast cancer analysis. Deep convolutional networks have become a promising approach in segmenting ABUS images. However, designing an effective network architecture is time-consuming, and highly relies on specialist's experience and prior knowledge. To address this issue, we introduce a searchable segmentation network (denoted as Auto-DenseUNet) based on the neural architecture search (NAS) to search the optimal architecture automatically for the ABUS mass segmentation task. Concretely, a novel search space is designed based on a densely connected structure to enhance the gradient and information flows throughout the network. Then, to encourage multiscale information fusion, a set of searchable multiscale aggregation nodes between the down-sampling and up-sampling parts of the network are further designed. Thus, all the operators within the dense connection structure or between any two aggregation nodes can be searched to find the optimal structure. Finally, a novel decoupled search training strategy during architecture search is also introduced to alleviate the memory limitation caused by continuous relaxation in NAS. The proposed Auto-DenseUNet method has been evaluated on our ABUS dataset with 170 volumes (from 107 patients), including 120 training volumes and 50 testing volumes split at patient level. Experimental results on testing volumes show that our searched architecture performed better than several human-designed segmentation models on the 3D ABUS mass segmentation task, indicating the effectiveness of our proposed method. [Display omitted] • A NAS-based breast tumor segmentation framework named as Auto-DenseUNet is proposed, for automatically searching the optimal segmentation architecture in a pre-defined search space. • A densely connected structure is incorporated into the search space to encourage information and gradient flows throughout the network. • A searchable multiscale feature aggregation scheme is designed to encourage information fusion across feature maps from different scales. • A decoupled search training strategy is intruducted into the Auto-DenseUnet, for relieving the computing memory burden during architecture searching. [ABSTRACT FROM AUTHOR]