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15 results on '"Stephen Simpson"'

1. Draft Genome Sequences for the Frankia sp. strains CgS1, CcI156 and CgMI4, Nitrogen-Fixing Bacteria Isolated from Casuarina sp. in Egypt

Author

W. Kelley Thomas, Krystalynne Morris, Louis S. Tisa, Stephen Simpson, Céline Pesce, Samira R. Mansour, and Erik Swanson

Subjects
Casuarina, salt tolerance, biology, natural products, actinobacteria, biology.organism_classification, Genome, Actinobacteria, Frankia sp, nitrogen fixation, actinorhizal symbiosis, Botany, Nitrogen fixation, Casuarina glauca, genomes, host microbe interactions, Gene, Research Paper
Abstract

Frankia sp. strains CgS1, CcI156 and CgMI4 were isolated from Casuarina glauca and C. cunninghamiana nodules. Here, we report the 5.26-, 5.33- and 5.20-Mbp draft genome sequences of Frankia sp. strains CgS1, CcI156 and CgMI4, respectively. Analysis of the genome revealed the presence of high numbers of secondary metabolic biosynthetic gene clusters.

Published
2020

2. Draft Genome Sequence of the Symbiotic Frankia sp. strain B2 isolated from root nodules of Casuarina cunninghamiana found in Algeria

Author

Hassen Gherbi, Louis S. Tisa, Stephen Simpson, Sergio Svistoonoff, Valérie Hocher, Djamel Gully, Kathia Belaid, W. Kelley Thomas, Alyssa Carré-Mlouka, Krystalynne Morris, Erik Swanson, and Said Amrani

Subjects
Whole genome sequencing, land reclamation, Root nodule, Casuarinaceae, Strain (chemistry), biology, Frankia, biology.organism_classification, Casuarina cunninghamiana, Genome, host-microbe interactions, nitrogen fixation, actinorhizal symbiosis, Botany, genomes, Gene, Research Paper
Abstract

Frankia sp. strain B2 was isolated from Casuarina cunninghamiana nodules. Here, we report the 5.3-Mbp draft genome sequence of Frankia sp. strain B2 with a G+C content of 70.1 % and 4,663 candidate protein-encoding genes. Analysis of the genome revealed the presence of high numbers of secondary metabolic biosynthetic gene clusters.

Published
2020

3. Draft Genome Sequence for Frankia sp. Strain BMG5.11, a Nitrogen-Fixing Bacterium Isolated from Elaeagnus angustifolia

Author

Maher Gtari, Abdellatif Gueddou, Krystalynne Morris, Louis S. Tisa, Erik Swanson, W. Kelley Thomas, Stephen Simpson, and Faten Ghodhbane-Gtari

Subjects
Whole genome sequencing, congenital, hereditary, and neonatal diseases and abnormalities, 0303 health sciences, biology, Strain (chemistry), 030306 microbiology, Genome Sequences, biology.organism_classification, Myricaceae, 03 medical and health sciences, Immunology and Microbiology (miscellaneous), Gymnostoma, mental disorders, Botany, Rhamnaceae, Genetics, Nitrogen fixation, Elaeagnaceae, Actinorhizal plant, Molecular Biology, 030304 developmental biology
Abstract

Frankia sp. strain BMG5.11, which was isolated from Elaeagnus angustifolia nodules, is able to infect other actinorhizal plants, including Elaeagnaceae, Rhamnaceae, Colletieae, Gymnostoma, and Myricaceae. Here, we report the 11.3-Mbp draft genome sequence of Frankia sp. strain BMG5.11, with a G+C content of 69.9% and 9,926 candidate protein-encoding genes.

Published
2020

4. Draft genome sequence of the symbiotic Frankia sp. strain BMG5.30 isolated from root nodules of Coriaria myrtifolia in Tunisia

Author

Faten Ghodhbane-Gtari, Abdellatif Gueddou, Karima Hezbri, Stephen Simpson, Imen Nouioui, W. Kelley Thomas, Maher Gtari, Louis S. Tisa, Krystalynne Morris, Erik Swanson, and Amir Ktari

Subjects
0106 biological sciences, 0301 basic medicine, Tunisia, Root nodule, Coriaria myrtifolia, Molecular Sequence Data, 01 natural sciences, Microbiology, Genome, Actinobacteria, Magnoliopsida, 03 medical and health sciences, Botany, Symbiosis, Molecular Biology, Phylogeny, Whole genome sequencing, Base Composition, Base Sequence, biology, Strain (chemistry), General Medicine, biology.organism_classification, 030104 developmental biology, Seedling, Nitrogen fixation, Frankia, Root Nodules, Plant, Genome, Bacterial, 010606 plant biology & botany
Abstract

Frankia sp. strain BMG5.30 was isolated from root nodules of a Coriaria myrtifolia seedling on soil collected in Tunisia and represents the second cluster 2 isolate. Frankia sp. strain BMG5.30 was able to re-infect C. myrtifolia generating root nodules. Here, we report its 5.8-Mbp draft genome sequence with a G + C content of 70.03% and 4509 candidate protein-encoding genes.

Published
2018

5. Draft Genome Sequence of the Symbiotic Frankia Sp. Strain KB5 Isolated from Root Nodules of Casuarina equisetifolia

Author

Céline Pesce, Stephen Simpson, Erik Swanson, Louis S. Tisa, Anita Sellstedt, Krystalynne Morris, and W. Kelley Thomas

Subjects
Short Research Paper, Hydrogenase, Root nodule, natural products, Biology, Genome, Microbiology, 03 medical and health sciences, Botany, hydrogenase, host microbe interactions, Gene, 030304 developmental biology, 0303 health sciences, 030306 microbiology, Biochemistry and Molecular Biology, Nitrogenase, actinobacteria, Casuarina equisetifolia, Botanik, biology.organism_classification, nitrogen fixation, actinorhizal symbiosis, Nitrogen fixation, genomes, RRNA Operon, Biokemi och molekylärbiologi
Abstract

Frankia sp. strain KB5 was isolated from Casuarina equisetifolia and previous studies have shown both nitrogenase and uptake hydrogenase activities under free-living conditions. Here, we report 5.5-Mbp draft genome sequence with a G+C content of 70.03 %, 4,958 candidate protein-encoding genes, and 2 rRNA operons.

Published
2017

6. Permanent Draft Genome sequence for Frankia sp. strain CcI49, a Nitrogen-Fixing Bacterium Isolated from Casuarina cunninghamiana that Infects Elaeagnaceae

Author

Zakkary McNutt, Krystalynne Morris, Erik Swanson, Stephen Simpson, Kelsey Harrington, W. Kelley Thomas, Céline Pesce, Feseha Abebe-Alele, Louis S. Tisa, and Samira R. Mansour

Subjects
Whole genome sequencing, 0303 health sciences, Casuarina, biology, Strain (chemistry), 030306 microbiology, Casuarina cunninghamiana, biology.organism_classification, Genome, Microbiology, 03 medical and health sciences, Botany, Nitrogen fixation, Elaeagnaceae, Actinorhizal plant, 030304 developmental biology
Abstract

Frankia sp. strain CcI49 was isolated from Casuarina cunninghamiana nodules. However the strain was unable to re-infect Casuarina, but was able to infect other actinorhizal plants including Elaeagnaceae. Here, we report the 9.8-Mbp draft genome sequence of Frankia sp. strain CcI49 with a G+C content of 70.5 % and 7,441 candidate protein-encoding genes. Analysis of the genome revealed the presence of a bph operon involved in the degradation of biphenyls and polychlorinated biphenyls.

Published
2017

7. Permanent Draft Genome Sequences for Mesorhizobium sp. Strains LCM 4576, LCM 4577, and ORS3428, Salt-Tolerant, Nitrogen-Fixing Bacteria Isolated from Senegalese Soils

Author

Louis S. Tisa, Rediet Oshone, Stephen Simpson, Erik Swanson, Diégane Diouf, Nathalie Diagne, Fatou Diouf, Dioumacor Fall, Lionel Moulin, Mathieu Ndigue Faye, Niokhor Bakhoum, Céline Pesce, Fatoumata Fall, Krystalynne Morris, and W. Kelley Thomas

Subjects
0301 basic medicine, biology, Mesorhizobium, Mesorhizobium sp, Genus Mesorhizobium, biology.organism_classification, Genome, Microbiology, 03 medical and health sciences, 030104 developmental biology, Botany, Soil water, Genetics, Nitrogen fixation, Molecular Biology, Legume
Abstract

The genus Mesorhizobium contains many species that are able to form nitrogen-fixing nodules on plants of the legume family. Here, we report the draft genome sequences for three Mesorhizobium strains. The genome sizes of strains LCM 4576, LCM 4577, and ORS3428 were 7.24, 7.02, and 6.55 Mbp, respectively.

Published
2017

8. Permanent Draft Genome Sequence for Frankia sp. Strain Cc1.17, a Nitrogen-Fixing Actinobacterium Isolated from Root Nodules of Colletia cruciata

Author

Faten Ghodhbane-Gtari, Feseha Abebe-Akele, Maher Gtari, Krystalynne Morris, Rediet Oshone, Erik Swanson, Stephen Simpson, W. Kelley Thomas, Arnab Sen, Imen Nouioui, and Louis S. Tisa

Subjects
0301 basic medicine, Whole genome sequencing, Root nodule, biology, Strain (biology), Frankia, biology.organism_classification, Microbiology, Myricaceae, 03 medical and health sciences, 030104 developmental biology, Botany, Rhamnaceae, Genetics, Nitrogen fixation, Molecular Biology, Gene
Abstract

Frankia sp. strain Cc1.17 is a member of the Frankia lineage 3, the organisms of which are able to reinfect plants of the Eleagnaceae, Rhamnaceae, and Myricaceae families and the genera Gynmnostoma and Alnus . Here, we report the 8.4-Mbp draft genome sequence, with a G+C content of 72.14% and 6,721 candidate protein-coding genes.

Published
2017

9. Permanent Draft Genome Sequence of Rhizobium sp. Strain LCM 4573, a Salt-Tolerant, Nitrogen-Fixing Bacterium Isolated from Senegalese Soils

Author

Lionel Moulin, Dioumacor Fall, Céline Pesce, Erik Swanson, Rediet Oshone, Fatoumata Fall, Niokhor Bakhoum, Nathalie Diagne, Louis S. Tisa, Mathieu Ndigue Faye, Stephen Simpson, Krystalynne Morris, W. Kelley Thomas, Diégane Diouf, and Fatou Diouf

Subjects
0106 biological sciences, 0301 basic medicine, Whole genome sequencing, Strain (chemistry), biology, Genomics, biology.organism_classification, 01 natural sciences, Genome, Microbiology, 03 medical and health sciences, 030104 developmental biology, Botany, Genetics, Nitrogen fixation, Molecular Biology, Gene, Legume, Bacteria, 010606 plant biology & botany
Abstract

The genus Rhizobium contains many species that are able to form nitrogen-fixing nodules on plants of the legume family. Here, we report the 5.5-Mb draft genome sequence of the salt-tolerant Rhizobium sp. strain LCM 4573, which has a G+C content of 61.2% and 5,356 candidate protein-encoding genes.

Published
2017

10. Permanent Draft Genome Sequence of the French Bean Symbiont Rhizobium sp. Strain RSm-3 Isolated from the Eastern Himalayan Region of India

Author

Maher Gtari, Feseha Abebe-Aleke, Krystalynne Morris, Pallab Kar, Ritu Rai, Louis S. Tisa, W. Kelley Thomas, D. Lama, Indrani Sarkar, Erik Swanson, Stephen Simpson, and Arnab Sen

Subjects
0106 biological sciences, 0301 basic medicine, Whole genome sequencing, Genus Rhizobium, Strain (biology), Rhizobium sp, Biology, 01 natural sciences, C content, 03 medical and health sciences, 030104 developmental biology, Botany, Genetics, Molecular Biology, Gene, Legume, 010606 plant biology & botany
Abstract

The genus Rhizobium contains many species able to form nitrogen-fixing nodules on plants of the legume family. Here, we report the 6.9-Mbp draft genome sequence of Rhizobium sp. strain RSm-3, with a G+C content of 61.4% and 6,511 candidate protein-coding genes.

Published
2017

11. Permanent Draft Genome Sequence of Frankia sp. Strain BR, a Nitrogen-Fixing Actinobacterium Isolated from the Root Nodules of Casuarina equisetifolia

Author

Timothy D’Angelo, Feseha Abebe-Akele, Rediet Oshone, Krystalynne Morris, Stephen Simpson, W. Kelley Thomas, and Louis S. Tisa

Subjects
0301 basic medicine, Whole genome sequencing, Root nodule, Casuarinaceae, biology, Strain (chemistry), Frankia, Casuarina equisetifolia, biology.organism_classification, Microbiology, 03 medical and health sciences, 030104 developmental biology, Botany, Genetics, Nitrogen fixation, Prokaryotes, Molecular Biology, Gene
Abstract

Frankia sp. strain BR is a member of Frankia lineage Ic and is able to reinfect plants of the Casuarinaceae family. Here, we report a 5.2-Mbp draft genome sequence with a G+C content of 70.0% and 4,777 candidate protein-encoding genes.

Published
2016

12. Permanent Draft Genome Sequence for Frankia sp . Strain EI5c, a Single-Spore Isolate of a Nitrogen-Fixing Actinobacterium, Isolated from the Root Nodules of Elaeagnus angustifolia

Author

Krystalynne Morris, Timothy D’Angelo, Feseha Abebe-Akele, Rediet Oshone, W. Kelley Thomas, Stephen Simpson, and Louis S. Tisa

Subjects
0301 basic medicine, Root nodule, biology, Strain (chemistry), Frankia, biology.organism_classification, Microbiology, Spore, Myricaceae, 03 medical and health sciences, 030104 developmental biology, Gymnostoma, Rhamnaceae, Botany, Genetics, Nitrogen fixation, Prokaryotes, Molecular Biology
Abstract

Frankia sp. strain EI5c is a member of Frankia lineage III, which is able to reinfect plants of the Eleagnaceae , Rhamnaceae , Myricaceae , and Gymnostoma , as well as the genus Alnus . Here, we report the 6.6-Mbp draft genome sequence of Frankia sp. strain EI5c with a G+C content of 72.14 % and 5,458 candidate protein-encoding genes.

Published
2016

13. Permanent Draft Genome Sequence for Frankia sp. Strain CeD, a Nitrogen-Fixing Actinobacterium Isolated from the Root Nodules of Casuarina equistifolia Grown in Senegal

Author

Antony Champion, Rediet Oshone, Feseha Abebe-Akele, Krystalynne Morris, Louis S. Tisa, Stephen Simpson, Mame Ourèye Sy, W. Kelley Thomas, Mariama Ngom, Sheldon G. Hurst, University of New Hampshire (UNH), Laboratoire mixte international Adaptation des Plantes et microorganismes associés aux Stress Environnementaux (LAPSE ), Université Cheikh Anta Diop [Dakar, Sénégal] (UCAD), Diversité, adaptation, développement des plantes (UMR DIADE), Institut de Recherche pour le Développement (IRD [France-Sud])-Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)-Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad), LMI Adaptation des Plantes et microorganismes associés aux Stress Environnementaux [Dakar] (LAPSE), Institut de Recherche pour le Développement (IRD), and Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [France-Sud])

Subjects
0301 basic medicine, Whole genome sequencing, Casuarina, Root nodule, Strain (chemistry), biology, fungi, biology.organism_classification, Genome, [SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology, DNA sequencing, Microbiology, 03 medical and health sciences, 030104 developmental biology, [SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN], Botany, Genetics, Nitrogen fixation, Prokaryotes, Molecular Biology, Gene
Abstract

Frankia strain CeD is a member of Frankia lineage Ib that is able to reinfect plants of the Casuarina families. Here, we report a 5.0-Mbp draft genome sequence with a G+C content of 70.1% and 3,847 candidate protein-encoding genes.

Published
2016

14. Permanent Draft Genome Sequence of Frankia sp. Strain AvcI1, a Nitrogen-Fixing Actinobacterium Isolated from the Root Nodules of Alnus viridis subsp. crispa Grown in Canada

Author

Krystalynne Morris, W. Kelley Thomas, Stephen Simpson, Rediet Oshone, Feseha Abebe-Akele, Erik Swanson, and Louis S. Tisa

Subjects
Betulaceae, 0303 health sciences, Root nodule, biology, 030306 microbiology, Strain (biology), Frankia, fungi, biology.organism_classification, Genome, Myricaceae, 03 medical and health sciences, Botany, Genetics, Nitrogen fixation, Alnus viridis, Prokaryotes, Molecular Biology, 030304 developmental biology
Abstract

Frankia strain AvcI1, isolated from root nodules of Alnus viridis subsp. crispa , is a member of Frankia lineage Ia, which is able to reinfect plants of the Betulaceae and Myricaceae families. Here, we report a 7.7-Mbp draft genome sequence with a G+C content of 72.41% and 6,470 candidate protein-encoding genes.

Published
2016

15. Permanent Draft Genome Sequence of Frankia sp. Strain ACN1ag, a Nitrogen-Fixing Actinobacterium Isolated from the Root Nodules of Alnus glutinosa

Author

Rediet Oshone, Feseha Abebe-Akele, W. Kelley Thomas, Erik Swanson, Stephen Simpson, Krystalynne Morris, and Louis S. Tisa

Subjects
Betulaceae, Whole genome sequencing, Root nodule, biology, Frankia, biology.organism_classification, Genome, Microbiology, Myricaceae, Alnus glutinosa, Botany, Genetics, Nitrogen fixation, Prokaryotes, Molecular Biology
Abstract

Frankia strain ACN1 ag is a member of Frankia lineage Ia, which are able to re-infect plants of the Betulaceae and Myricaceae families. Here, we report a 7.5-Mbp draft genome sequence with a G+C content of 72.35% and 5,687 candidate protein-encoding genes.

Published
2015

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