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A polyphasic approach was used to characterize a novel bacterium, designated strain TPP412T, isolated from a paddy soil in Taiwan. Strain TPP412T was Gram-stain-negative, facultatively anaerobic, rod-shaped, motile with a single polar flagellum and lacked bacteriochlorophyll. Growth was observed at 24–45 °C (optimal 25 °C), at pH 5.0–10.0 (optimal pH 7.0) and with 0–0.75 % (w/v) NaCl. Strain TPP412T showed highest 16S rRNA gene sequence similarity to members of the genera Rhodocyclus (94.1–94.5 %), Azospira (93.9–94.5 %) and Propionivibrio (93.4–94.4 %) and established a discrete taxonomic lineage in phylogenetic analysis. The major fatty acids found in strain TPP412T were C12 : 0, C12 : 0 3-OH, iso-C15 : 0 3-OH, C16 : 0, C16 : 1 ω7c/C16 : 1 ω6c and C18 : 1 ω7c/C18 : 1 ω6c. The major polar lipids consisted of phosphatidylmonomethylethanolamine, diphosphatidylglycerol, phosphatidylglycerol and an unidentified lipid. The polyamine pattern showed a predominance of putrescine and a minor amount of spermidine. The DNA G+C content was 58.4 mol% and the predominant quinone system was ubiquinone-8 (Q-8). The low 16S rRNA gene sequence similarity values (≤94.5%) and distinct phylogenetic clustering clearly distinguished strain TPP412T from other representatives of the family Rhodocyclaceae . Based on the discrete phylogenetic, phenotypic and chemotaxonomic traits together with results of comparative 16S rRNA gene sequence analysis, strain TPP412T is considered to represent a novel species of a new genus in the family Rhodocyclaceae , for which the name Oryzomicrobium terrae gen. nov., sp. nov. is proposed. The type strain of Oryzomicrobium terrae is TPP412T (=BCRC 80905T=JCM 30814T).

Heat stress is an important factor that has a negative impact on rice (Oryza sativa) production. To alleviate this problem, it is necessary to extensively understand the genetic basis of heat tolerance and adaptability to heat stress in rice. Here, we report the molecular mechanism underlying heat acclimation memory that confers long-term acquired thermotolerance (LAT) in this monocot plant. Our results showed that a positive feedback loop formed by two heat-inducible genes, HEAT SHOCK PROTEIN101 (HSP101) and HEAT STRESS-ASSOCIATED 32-KD PROTEIN (HSA32), at the posttranscriptional level prolongs the effect of heat acclimation in rice seedlings. The interplay between HSP101 and HSA32 also affects basal thermotolerance of rice seeds. These findings are similar to those reported for the dicot plant Arabidopsis (Arabidopsis thaliana), suggesting a conserved function in plant heat stress response. Comparison between two rice cultivars, japonica Nipponbare and indica N22 showed opposite performance in basal thermotolerance and LAT assays. 'N22' seedlings have a higher basal thermotolerance level than cv Nipponbare and vice versa at the LAT level, indicating that these two types of thermotolerance can be decoupled. The HSP101 and HSA32 protein levels were substantially higher in cv Nipponbare than in cv N22 after a long recovery following heat acclimation treatment, at least partly explaining the difference in the LAT phenotype. Our results point out the complexity of thermotolerance diversity in rice cultivars, which may need to be taken into consideration when breeding for heat tolerance for different climate scenarios.

The involvement of ethylene and 1-aminocyclopropane-1-carboxylic acid (ACC) in shade-induced kernel abortion at an early kernel growth stage was investigated. Changes in levels of glucose, sucrose, starch, ACC and ethylene were measured during the first 6 days after pollination (DAP) at sampling intervals of 12 or 24 h. In response to shading treatment, dry weight accumulation of apical kernels ceased within 96 h after pollination (HAP). Glucose levels in shaded kernels 12 HAP were significantly higher than in control kernels, while sucrose and starch levels were similar until 48 HAP. In the shade treatment ACC and ethylene levels increased rapidly around 24 HAP in both apical and basal kernels. When ACC was applied to ears at 32 HAP and 5 DAP, dry weight accumulation was significantly reduced only in apical kernels of 32 HAP. Significant reduction in endosperm nuclei number was also found in both shaded and ACC-treated kernels. The results of the present study suggest that ethylene may be involved in the processes leading to kernel abortion in maize. Kernels at the very early developmental stages seem to be most sensitive to ethylene.

Ozone is one of the major gaseous pollutants detrimental to crop growthand metabolism. The objective of this research was to study how ABA amelioratesthe effects of ozone on rice seedlings. Seedlings of two rice cultivars withdifferent sensitivities to ozone (Tainung 67, tolerant; and Taichung Native 1,sensitive) were treated with 400 ppb of ozone or ABA and 400ppb of ozone to determine their effect on growth, stomatalmovement, chlorophyll characteristics, and the activity of antioxidant enzymes.Activities of the enzymes SOD, APOD, GR and POD were significantly higher inthesensitive cultivar, TN 1, than in the tolerant cultivar, TNG 67. Seedlings ofthe sensitive cultivar pretreated with ABA (10 μM) weresignificantly more tolerant of ozone than control seedlings. Pretreatment withABA effectively reduced stomatal conductance and the degree of injury. Abscisicacid also increased ascorbate peroxidase and glutathione reductase activity.Ozone increased peroxidase activity in sensitive seedlings, but ABA decreasedperoxidase activity. The sensitive cultivar had a higher density of stomata onits leaves than the tolerant cultivar. The results suggest that ABA inducedtolerance to ozone may be more associated with its effects on stomatal movementthan on the modulation of antioxidant enzyme activity.

Soluble acidity has been used as one of major indexes to reflect the changes of rice (Oryza sativa L.) grain quality during storage. The acidity is in general visually examined by pH dye indicators or directly measured by a pH meter. By combining the characteristics of pH dye indicator, 96-well microplate, and microplate reader, we have developed a procedure capable of effectively measuring the pH value of rice grains at a single-grain level. First, from a pH-dye system prepared with methyl red and bromothymol blue, we scanned the spectral response to pH and determined that a wavelength of 630 nm showed the maximum response to pH changes with storage age of rice grains. By means of a 96-well microplate and plate reader, a pH standard curve was then constructed with a series of pH standard buffers and absorbance at 630 nm. The pH value of a single grain in a microplate well can be measured by incubating the grain with dye solution and reading absorbance. The proposed procedure offers an efficient means of measuring the change of soluble acidity in rice grains during storage on an individual-grain basis. The method may also rapidly detect the uniformity or blending status of fresh/old grains in a sample.

Physiological and biochemical changes related to methyl jasmonate (MeJA)-induced chilling tolerance of rice (Oryza sativa L. cv. Taichung Native 1) seedlings were investigated. Treatment of whole plants with 10 mmol m -3 MeJA for 48 h before chilling (5 °C) was optimal for the induction of chilling tolerance. MeJA greatly improved the survival ratio of chilled seedlings and ameliorated chilling injury such as demolition of membrane structure (estimated by electrolyte leakage). MeJA also prevented water loss in chilled seedlings by reducing the opening of stomata and decreasing the root bleeding rate. Putrescine and spermine levels in shoots increased but spermidine levels decreased on exposure to MeJA. In roots, putrescine levels also increased and spermidine levels increased transiently on exposure to MeJA. Activities of arginine decarboxylase (ADC ; EC 4.1.1.19) and S-adenosylmethionine decarboxylase (SAMDC ; EC 4.1.1.50) in both shoots and roots increased on exposure to MeJA, while the activity of ornithine decarboxylase (ODC ; EC 4.1.1.17) remained unchanged. The MeJA-induced putrescine increase was inhibited by 50 mmol m -3 α-difluoromethylarginine (DFMA), an irreversible inhibitor of ADC, but not by 50 mmol m -3 α-difluoromethylornithine (DFMO), an irreversible inhibitor of ODC. The effect of MeJA on the induction of chilling tolerance was also reduced by 50 mmol m -3 DFMA. The effects of DFMA were partly prevented by 1 mol m -3 putrescine. This indicates that putrescine accumulation is required for the induction of chilling tolerance of rice seedlings by MeJA.

Changes of internal ABA levels in relation to anoxia- or ethylene-induced growth alterations were determined in etiolated rice ( Oryza sativa L. cv. Taichung Native 1) seedlings. An inverse relationship between ABA levels and growth was observed at the early growth stages of rice seedlings. When rice seedlings were exposed to anoxia or 10 μl/l ethylene, coleoptile elongation was enhanced while growth of roots and leaves was inhibited. In contrast, anoxia or ethylene induced a decrease of ABA levels in coleoptiles but an increase in roots and leaves, especially after 48 h of treatment. In addition, the anoxia- or ethylene-enhanced coleoptile elongation was inhibited by ABA ranging from 10 −7 M to 10 −4 M. Thus,results presented here indicate that ABA is an inhibitory modulator in the anoxia- or ethylene-induced morphological changes of etiolated rice seedlings.

Summary The role of abscisic acid (ABA), ethylene and polyamines in leaf senescence of tobacco exposed to flooding was investigated. Senescence of tobacco leaves was followed by measuring the decrease of protein. Flooding significantly promoted senescence of tobacco leaves and resulted in a higher ABA content than the controls throughout the entire 4-day experimental duration. Ethylene production in flooding-treated leaves was much higher than that in control leaves during the first day of the experiment. Putrescine and spermidine, but not spermine, were present in tobacco leaves throughout the experimental duration. Flooded leaves had higher levels of putrescine and spermidine than untreated leaves. It is concluded that ethylene, but neither ABA nor polyamines, is possibly involved in the regulation of flooding-promoted senescence of tobacco leaves.

To provide insight into the regulatory roles of auxin and cytokinin in endosperm development, defective kernel ( dek ) mutants of maize ( Zea mays L.) were examined. The mutants dek 6, dek 18 and dek 26 had substantially lower indole-3-acetic acid (IAA) levels than wild-type counterparts while dek 8, dek 12 dek 24 had higher IAA levels than wild-type counterparts. The mutant dek 6 had a somewhat lower zeatin level than its wild-type counterpart. The mutation-induced changes in IAA levels and effects of exogenously-applied auxin were not consistently related to changes in numbers of nuclei per endorsperm; however, there was a correspondence between auxin level in endosperm and nuclear diameter, which is proportional to the extent of post-mitotic DNA synthesis (endoreduplication). We conclude that auxin may be involved in stimulating endoreduplication.

Changes of ABA levels in chilled rice (Oryza sativa L.) seedlings of two varieties were determined. On exposure to chilling, ABA concentration rapidly increased in the chilling-tolerant cultivar (cv. Tainung 67, TNG.67) but not in the chilling-sensitive cultivar (cv. Taichung Native 1, TN.1). Both detached shoots and roots of TNG.67 seedlings showed a significant ABA increase after exposure to chilling. TN.1 seedlings could not accumulate ABA under low temperature but well-watered status. Exogenous application of the ABA biosynthetic inhibitor, fluridone, reduced ABA accumulation, as well as survival ratio of chilled TNG.67 seedlings. Electrolyte leakage and leaf conductance were also increased by the inhibitor and the effects could be reversed by exogenously applied ABA. ABA concentrations in xylem sap of TNG.67 seedlings increased within 4 h after chilling, and this was temporally coincident with the reduction of leaf conductance. The roles of endogenous ABA in the tolerance of rice seedlings to chilling on a whole plant basis are discussed and suggested.