Key message: Adequate storability of black poplar (Populus nigraL.) seeds at temperatures below 0 °C was associated with preservation of proteins of energy and carbohydrate metabolism, protein turnover, and proteins maintaining long-term stability of dehydrated tissue. Context: Understanding seed storability is a key factor for effective seed preservation and conservation. Black poplar is an endangered tree species and its seed loses rapidly viability during storage. Aims: The aim of this study was to determine, and functionally characterise, the proteins associated with storability of black poplar seeds. Methods: Dried seeds (7.1% MC) were stored at 3 °C, − 3 °C, − 20 °C, and − 196 °C, for a period of 12 and 24 months. Proteins were extracted and separated according to their isoelectric point (pI) and mass using 2-dimensional electrophoresis. Proteins that varied in abundance for temperature and time of storage were identified by mass spectrometry. Results: A germination test showed that seeds remained viable at − 3, − 20, and − 196 °C. Storage at 3 °C caused loss of seed viability. This loss in seed vigour was related to the largest changes in protein abundance. As storage temperature decreased, a smaller number of proteins displayed changed abundance. Conclusion: Good storability of black poplar seeds under freezing conditions may be associated with the following: an inhibition of synthesis of energy and carbohydrate metabolism and protein turnover proteins, LEA proteins that maintain long-term stability of dehydrated tissue, GDSL esterases/lipases that inhibit hydrolysing activity, and by chaperonins that protect protein functionality. Storage conditions influence the preservation of protein function that governs seed viability. [ABSTRACT FROM AUTHOR]