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Bison are an icon of the American West and an ecologically, commercially, and culturally important species. Despite numbering in the hundreds of thousands today, conservation concerns remain for the species, including the impact on genetic diversity of a severe bottleneck around the turn of the 20th century and genetic introgression from domestic cattle. Genetic diversity and admixture are best evaluated at genome-wide scale, for which a high-quality reference is necessary. Here, we use trio binning of long reads from a bison-Simmental cattle (Bos taurus taurus) male F1 hybrid to sequence and assemble the genome of the American plains bison (Bison bison bison). The male haplotype genome is chromosome-scale, with a total length of 2.65 Gb across 775 scaffolds (839 contigs) and a scaffold N50 of 87.8 Mb. Our bison genome is ~13× more contiguous overall and ~3400× more contiguous at the contig level than the current bison reference genome. The bison genome sequence presented here (ARS-UCSC_bison1.0) will enable new research into the evolutionary history of this iconic megafauna species and provide a new tool for the management of bison populations in federal and commercial herds., (© The American Genetic Association. 2021.)

Bison from Yellowstone National Park (YNP) have an important genetic history. As one of the few wild herds of bison with no evidence of cattle DNA introgression and a large enough population to maintain genetic diversity, they are considered a conservation priority for the species. Unfortunately, there is a high prevalence of the zoonotic disease brucellosis in the herd. Part of the management strategy for controlling the disease and herd size in YNP is to remove bison from the population during the winter migration out of the park. This interagency management cull provides an opportunity to collect a large number of oocytes from a wild bison population for genetic banking and research purposes. During the winters of 2014-2018, which is the nonbreeding season for bison, oocytes were collected post mortem and used to determine the effects of donor reproductive maturity and pregnancy status on oocyte quality and in vitro fertilization (IVF) outcomes, and to demonstrate the feasibility of producing healthy offspring. Cumulus oocyte complexes (COCs) were placed into an in vitro embryo production (IVP) system, and on days 7, 7.5, and 8 of in vitro culture (Day 0 = day of in vitro fertilization) embryos were assessed for developmental stage and quality prior to vitrification. Embryos were then stored in liquid nitrogen until the breeding season when a subset were warmed, cultured for 6 h, evaluated for survival, and transferred to healthy bison recipients. There were no significant differences in the ability of recovered COCs to support blastocyst development based on female reproductive maturity or pregnancy status (juvenile 79/959 (8.2%) vs sexually mature 547/6544 (8.4%); non-pregnant 188/2302 (8.2%) vs pregnant 556/6122 (9.1%)). Following the transfer of 15 embryos to 10 recipients, one healthy female calf was born. This work demonstrates that live offspring can be generated from COCs collected from YNP bison post mortem in the non-breeding season, and that gamete recovery can be a valuable tool for conservation of valuable genetics for this species while mitigating diseases like brucellosis., (Copyright © 2020 The Author(s). Published by Elsevier Inc. All rights reserved.)

Bison are an iconic species of cultural, conservation, and commercial interest. Various assisted reproductive technologies have been tested in bison over the last few decades (e.g., superovulation and embryo transfer), but their efficiencies are low. Since 2007, several methods for producing bison embryos in vitro have been published. All of these methods are based on cattle embryo production models and have varying degrees of success with regard to embryo production rates. In this chapter, a brief summary of these reports is presented followed by a detailed protocol that has been successfully used to produce bison embryos in vitro and live offspring following embryo transfer.

This study was conducted to optimize the cryopreservation of epididymal bison sperm harvested in the field. In the first experiment, epididymal bison sperm were treated with or without seminal plasma (n = 6) and cooled to 5 °C over 2 hours. In a separate experiment, glycerol was added at different times and sperm was held at 5 °C for different periods of time before cryopreservation (n = 11). In addition, epididymal sperm frozen with and without seminal plasma (n = 6) and after 4, 24, and 48 hours (n = 5) of equilibration at 5 °C, were evaluated for their in vitro fertilizing ability. Post-thaw motility of bison epididymal sperm was similar when cryopreserved with or without seminal plasma or when glycerol was added at either 0, 4, 24, or 48 hours before freezing (P > 0.05). However, sperm incubated at 5 °C for 24 hours before freezing exhibited higher percentages of motile sperm (44% vs. 35% for 4 hours or 48 hours, P < 0.05). Fertilization rates of bison oocytes were not different for any treatments. Chilling the whole epididymis for 24 or 48 hours resulted in complete loss of sperm viability. In conclusion, bison epididymal sperm can be chilled outside of the epididymis for at least 48 hours before cryopreservation without compromising post-thaw sperm motility providing flexibility for technicians performing field collections., (Copyright © 2016 Elsevier Inc. All rights reserved.)

Genomics research has relied principally on the establishment and curation of a reference genome for the species. However, it is increasingly recognized that a single reference genome cannot fully describe the extent of genetic variation within many widely distributed species. Pangenome representations are based on high-quality genome assemblies of multiple individuals and intended to represent the broadest possible diversity within a species. A Bovine Pangenome Consortium (BPC) has recently been established to begin assembling genomes from more than 600 recognized breeds of cattle, together with other related species to provide information on ancestral alleles and haplotypes. Previously reported de novo genome assemblies for Angus, Brahman, Hereford, and Highland breeds of cattle are part of the initial BPC effort. The present report describes a complete single haplotype assembly at chromosome-scale for a fullblood Simmental cow from an F1 bison-cattle hybrid fetus by trio binning. Simmental cattle, also known as Fleckvieh due to their red and white spots, originated in central Europe in the 1830s as a triple-purpose breed selected for draught, meat, and dairy production. There are over 50 million Simmental cattle in the world, known today for their fast growth and beef yields. This assembly (ARS_Simm1.0) is similar in length to the other bovine assemblies at 2.86 Gb, with a scaffold N50 of 102 Mb (max scaffold 156.8 Mb) and meets or exceeds the continuity of the best Bos taurus reference assemblies to date.

Two adult female bison, housed in an outdoor research facility and observed daily, died suddenly three days apart. Minimal coordination and behavioral changes were observed in one animal the evening before being found in a moribund state.Malignant catarrhal fever was suspected in both bison due to a recent confirmed MCF case with similar course. The cause of death was not apparent from necropsy, but brains of both animals were strongly positive for rabies virus antigen by fluorescent antibody and/or immunohistochemical tests. Minimal to mild encephalitis with Negri bodies was observed on histopathology. The bison were located in an area that had not been endemic for skunk rabies; however, a case of rabies in a skunk had been discovered 1.6 km north of the bison paddock two months prior to the bison cases. [ABSTRACT FROM AUTHOR]

Restoring free-roaming mammals that fill critical ecological roles requires large connected landscapes that cross jurisdictional boundaries. Plains bison, once nearly extirpated from North America, are now confined to several larger free-roaming herds and a number of small fenced herds in regions where they are often managed as livestock rather than wildlife. Although bison reintroduction efforts are rapidly gaining momentum, restoring free-roaming bison remains challenged by real and perceived wildlife-human conflict. Thus, developing a shared vision for bison recovery, or at least understanding and acknowledging diverse visions, could be critical to success. To address this need, we surveyed experts from government, academia, and conservation organizations to evaluate if there is a shared long-term vision for bison, and to identify the most significant challenges, promising strategies, and research priorities for achieving this vision. We found that most respondents support a future with fenced herds as well as more free-roaming (unfenced) herds, and value bison as wildlife and cultural animals, rather than for livestock. Key challenges to achieving more free-roaming bison included political will, social acceptability, and management across jurisdictional boundaries. Respondents identified successful strategies for overcoming barriers as bottom-up collaborations, economic incentives, and demonstration projects. Research priorities were largely social rather than biophysical, with a strong focus on how to motivate broad public support for free-roaming herds. As an ecological and cultural keystone species, restoring large and connected bison herds where human-bison co-existence is feasible will reap rewards for nature and people. • Bison restoration is challenged by real and perceived human-wildlife conflict. • We surveyed bison experts to assess whether they hold a shared vision for recovery. • Respondents supported a future with both fenced and more free-roaming herds. • Key challenges and research priorities are largely social rather than biophysical. • Public support is needed to restore this ecological and cultural keystone species. [ABSTRACT FROM AUTHOR]