14 results on '"Farhad Nazarian Firouzabadi"'
Search Results
2. Expression of apple MdMYB10 transcription factor in sugar beet with a screenable marker role and antimicrobial activity
- Author
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Mitra Khademi, Farhad Nazarian-Firouzabadi, and Ahmad Ismaili
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Original Article ,Environmental Science (miscellaneous) ,Agricultural and Biological Sciences (miscellaneous) ,Biotechnology - Abstract
Selection of transgenic plants by using genes encoding screenable markers of plant origin with health benefit properties, such as anthocyanin is an important aim in plant genetic engineering. In this study, Malus domestica MYB10 (MdMYB10) gene, was used for Agrobacterium tumefaciens-mediated transformation of two SBS-02 and SBS-04 sugar beet lines. The impact of different light regimes on plant tissue culture from a combination of light, dark/light and dark was investigated. The results of this study showed that the MdMYB10 gene was successfully integrated into the selected purple transgenic lines, suggesting that the expression of MdMYB10 gene in sugar beet shoots can be used as a screenable markers for transformation, possibly replacing antibiotic resistant genes. Furthermore, the results of the antibacterial activity of transgenic plants extracts showed that the total extract obtained from transgenic lines significantly (P
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- 2022
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3. Erratum to 'Identification of miRNAs and evaluation of candidate genes expression profile associated with drought stress in barley' [Plant Gene 20C (2019) 100205]
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Sajjad Zare, Farhad Nazarian-Firouzabadi, Ahmad Ismaili, and Hassan Pakniyat
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Genetics ,Plant Science ,Biochemistry ,Biotechnology - Published
- 2023
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4. Production of a Recombinant Dermaseptin Peptide in Nicotiana tabacum Hairy Roots with Enhanced Antimicrobial Activity
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Ahmad Ismaili, Reza Shirzadian-Khorramabad, Marzieh Varasteh Shams, and Farhad Nazarian-Firouzabadi
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0106 biological sciences ,Hypha ,Agrobacterium ,Nicotiana tabacum ,Antimicrobial peptides ,Chitin ,Bioengineering ,Biology ,Plant Roots ,01 natural sciences ,Applied Microbiology and Biotechnology ,Biochemistry ,Amphibian Proteins ,Microbiology ,law.invention ,Fungal Proteins ,03 medical and health sciences ,law ,010608 biotechnology ,Tobacco ,Molecular Biology ,Disease Resistance ,Plant Diseases ,030304 developmental biology ,0303 health sciences ,Binding Sites ,Dermaseptin ,Effector ,fungi ,Alternaria ,Plants, Genetically Modified ,Antimicrobial ,biology.organism_classification ,Recombinant Proteins ,Recombinant DNA ,Cladosporium ,Antimicrobial Cationic Peptides ,Biotechnology - Abstract
Expression of strong antimicrobial peptides in plants is of great interest to combat a wide range of plant pathogens. To bring the Dermaseptin B1 (DrsB1) peptide to the intimate contact of the plant pathogens cell wall surface, the DrsB1 encoding sequence was fused to the C-terminal part of the two copies of the chitin-binding domain (CBD) of the Avr4 effector protein and used for Agrobacterium rhizogenes-mediated transformation. The expression of the recombinant protein in the tobacco hairy roots (HRs) was confirmed by molecular analysis. Antimicrobial activity analysis of the recombinant protein purified from the transgenic HRs showed that the (CBD)2-DrsB1 recombinant protein had a significant (p
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- 2019
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5. Assessment of Genetic Diversity among Wheat Genotypes of West Iran, Using Randomized Markers
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Tahmasb Hosseinpour, Farhad Nazarian-Firouzabadi, Reza MirDrikvand, Ali Darvishian, and Ahmad Ismaili
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Genetic diversity ,business.industry ,Genotype ,Biology ,business ,Biotechnology - Published
- 2016
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6. Production of microbial mutan polysaccharide by expression of a mutansucrase gene (gtfI) in sugarcane
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Salwa Karboune, Bijan Bajelan, Farhad Nazarian-Firouzabadi, Ahmad Ismaili, and Maryam Ahmadi
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0106 biological sciences ,0301 basic medicine ,Sucrose ,Plant Science ,Streptococcus downei ,medicine.disease_cause ,01 natural sciences ,03 medical and health sciences ,chemistry.chemical_compound ,Saccharum officinarum ,Genetics ,medicine ,Molecular Biology ,Southern blot ,Glucan ,chemistry.chemical_classification ,biology ,biology.organism_classification ,Blot ,030104 developmental biology ,chemistry ,Biochemistry ,biology.protein ,Glucosyltransferase ,Expression cassette ,Agronomy and Crop Science ,010606 plant biology & botany ,Biotechnology - Abstract
Due to its high productivity and sucrose content, sugarcane (Saccharum officinarum) is becoming the source of high-value bioproducts. Expression of bacterial extracellular polysaccharide genes in non-biopolymer accumulating plants is an excellent resource for production of added-value products. To this end, an expression cassette containing a full-length glucosyltransferase (gtfI) gene from Streptococcus downei driven by a CaMV promoter was expressed in a commercial sugarcane cultivar (CP48-103) using a biolistic approach. Copy number was assessed for a number of selected transgenic sugarcane lines by DNA blot analysis, where it was corroborated that each transgenic line contained at least two gtfI copies. The southern blot analysis of gtfI-expressing lines showed that the number of integrated copies ranged from two to four. The expression of gtfI in transgenic sugarcane plants was confirmed by mRNA blot analysis and qRT-PCR analysis. The expression of gtfI in transgenic sugarcane plants resulted in an approximate 30% reduction in sucrose accumulation, suggesting that mutansucrase actively converted sucrose to mutan polymer. In internodal stalk tissues, mutan polymer accumulated up to 55.9 mg/g FW, which apparent through glucan staining. The levels of glucose and fructose increased nearly by twofold, suggesting that mutansucrase may also have hydrolyzing activity.
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- 2018
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7. Fusion of a chitin-binding domain to an antibacterial peptide to enhance resistance to Fusarium solani in tobacco (Nicotiana tabacum)
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Azam Badrhadad, Farhad Nazarian-Firouzabadi, and Ahmad Ismaili
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0106 biological sciences ,0301 basic medicine ,biology ,Nicotiana tabacum ,Transgene ,fungi ,Wilting ,food and beverages ,Genetically modified crops ,Environmental Science (miscellaneous) ,biology.organism_classification ,01 natural sciences ,Agricultural and Biological Sciences (miscellaneous) ,Spore ,Microbiology ,03 medical and health sciences ,Transformation (genetics) ,030104 developmental biology ,Chitin binding ,Original Article ,Fusarium solani ,010606 plant biology & botany ,Biotechnology - Abstract
An antibacterial peptide-encoding gene from alfalfa seeds, alfAFP, was fused to the C-terminal part of chitin-binding domain (CBD) of the rice chitinase-encoding gene (CBD-alfAFP) and introduced to tobacco by Agrobacterium-mediated transformation. Polymerase chain reaction (PCR) technique was used to confirm the integration of the recombinant CBD-alfAFP encoding gene in transgenic tobacco plants. A number of transgenic lines and a non-transgenic control plant were selected for further molecular analyses. The result of analyzing the transgenic plants by semi-quantitative RT-PCR showed that the recombinant gene is expressed in transgenic plants and there is a difference between the transgenic plants in terms of the level of CBD-alfAFP expression. The total protein was extracted from a few selected transgenic plants and used to evaluate the antibacterial/antifungal of recombinant protein activity against some important plant and human pathogens. The results of this experiment showed that the total protein extract obtained from transgenic lines significantly (P
- Published
- 2018
8. Giberella fujikuroi species complex isolated from maize and wheat in Iran: distribution, molecular identification and fumonisin B1 in vitro biosynthesis
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Abdelnasser Mohammadi, Mohammadhassan Gholami-Shabani, Farhad Nazarian-Firouzabadi, Masoomeh Shams-Ghahfarokhi, Mehdi Razzaghi-Abyaneh, and Reza Kachuei
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0301 basic medicine ,Fusarium ,Fumonisin B1 ,Species complex ,Veterinary medicine ,Nutrition and Dietetics ,030106 microbiology ,Dendrogram ,Food spoilage ,Biology ,Contamination ,biology.organism_classification ,03 medical and health sciences ,chemistry.chemical_compound ,chemistry ,Botany ,Genotype ,Agronomy and Crop Science ,Food Science ,Biotechnology ,Food contaminant - Abstract
Background Contamination of food and agricultural crops by Fusarium species is a major concern of food spoilage and a potential public health hazard. In the present study, natural contamination of maize and wheat samples from main cultivation areas of Iran by Fusarium species belonging to the Giberella fujikuroi species complex was evaluated, with special attention to the ability of the isolates to produce fumonisin B1 (FB1 ). Results A total of 55 Fusarium isolates were obtained from 27/32 maize samples (84.4%) and 11/15 wheat samples (73.3%). They were identified as F. verticillioides (47.3%), F. proliferatum (47.3%), F. fujikuroi (1.8%), F. nygamai (1.8%) and F. redolens (1.8%) by sequence analysis of translation elongation factor 1-α (TEF1-α). Twenty-two of 55 Fusarium isolates belonging to F. proliferatum (23.6%), F. verticillioides (14.5%) and F. fujikuroi (1.8%) produced FB1 in the concentration range 230.4-9565.0 µg mL(-1) . The dendrogram resulting from the TEF1-α profile showed that the genotypes were divided into clusters I, II and III, of which cluster III contained only F. redolens, its first report from Iran. Conclusion On the basis of in vitro FB1 biosynthesis of the analyzed strains, the high degree of contamination of maize and wheat with Fusarium strains reported here should be considered as a potential public health threat, because a meaningful number of the isolates were found to produce hazardous levels of carcinogenic FB1 .
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- 2015
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9. Identification of miRNAs and evaluation of candidate genes expression profile associated with drought stress in barley
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Farhad Nazarian-Firouzabadi, Sajjad Zare, Hassan Pakniyat, and Ahmad Ismaili
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0106 biological sciences ,0301 basic medicine ,Genetics ,Candidate gene ,Drought stress ,Contig ,Drought tolerance ,food and beverages ,Plant Science ,Biology ,01 natural sciences ,Biochemistry ,03 medical and health sciences ,030104 developmental biology ,microRNA ,Gene ,Lipid Transport ,Completely randomized design ,010606 plant biology & botany ,Biotechnology - Abstract
To identify miRNAs and assess the expression of genes involved in drought stress tolerance, leaf and root ESTs were analyzed in barley. To this end, the EGassembler bioinformatics service and IDEG6 were used for the pre-processing and identify differentially expressed genes among EST libraries, respectively. Furthermore, root contigs were analyzed by C-mii software for miRNAs identification. The expression profile of two drought tolerance candidate genes was studied, using Real time-PCR in a 2 (Nimruz and Spontaneum) × 2 (control and 50% FC) factorial experiment in a completely randomized design with 3 replications. Results of this study showed that N-butyl-N-methylpiperidinium (Pip1;4) and a non-specific lipid transport protein (nsLTP) were found to express differently under drought stress. The expression level of barley HvPip1;4 (HvPiP1;4) and non-specific lipid transport (HvnsLTP) genes increased by 95.98 and 54.53 fold after 72 h of drought stress, respectively. There was a significant difference (P
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- 2019
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10. Correction to: Production of a Recombinant Dermaseptin Peptide in Nicotiana tabacum Hairy Roots with Enhanced Antimicrobial Activity
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Reza Shirzadian-Khorramabad, Marzieh Varasteh Shams, Ahmad Ismaili, and Farhad Nazarian-Firouzabadi
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0106 biological sciences ,0303 health sciences ,Nicotiana tabacum ,Bioengineering ,Biology ,biology.organism_classification ,Dermaseptin peptide ,Antimicrobial ,01 natural sciences ,Applied Microbiology and Biotechnology ,Biochemistry ,Microbiology ,law.invention ,03 medical and health sciences ,law ,010608 biotechnology ,Recombinant DNA ,Molecular Biology ,030304 developmental biology ,Biotechnology - Abstract
The original version of this article unfortunately contained a mistake in the unit “μg/l”. The unit “μg/l” should be corrected to “μg/ml” throughout the paper.
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- 2019
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11. Expression of an engineered granule-bound Escherichia coli maltose acetyltransferase in wild-type and amf potato plants
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Luc C. J. M. Suurs, Farhad Nazarian Firouzabadi, Qin Ji, Richard G. F. Visser, and Jean-Paul Vincken
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Starch ,structural gene ,Mutant ,cloning ,reduction ,Plant Science ,retrogradation properties ,Biology ,Protein Engineering ,medicine.disease_cause ,chemistry.chemical_compound ,Laboratorium voor Plantenveredeling ,amylose ,Biosynthesis ,Acetyltransferases ,Amylose ,substitution ,medicine ,Escherichia coli ,Solanum tuberosum ,Escherichia coli Proteins ,EPS-3 ,Granule (cell biology) ,food and beverages ,Maltose ,sequence ,Plants, Genetically Modified ,Recombinant Proteins ,Plant Breeding ,synthase ,chemistry ,Biochemistry ,Acetyltransferase ,biosynthesis ,starch granules ,Agronomy and Crop Science ,Biotechnology - Abstract
Starch is used in many industrial applications, but often requires chemical derivatization to enhance its properties before use. In particular, the stability of starch polymers in solution is improved by acetylation. A drawback of this treatment is the use of pollutant chemicals. A biological alternative to chemical derivatization was investigated by the expression of an amyloplast-targeted Escherichia coli maltose acetyltransferase (MAT) gene in tubers of wild-type (Kardal) and mutant amylose-free (amf) potato plants. MAT was expressed as such, or fused to the N- or C-terminus of a non-catalytic starch-binding domain (SBD) to target the starch granule. Starch granules derived from transgenic plants were found to contain acetyl groups, although their content was low, opening up an avenue to move away from the post-harvest chemical derivatization of starch. MAT inside starch granules was found to be active post-harvest when supplied with acetyl-coenzyme A and glucose or maltose, but it did not acetylate starch polymers in vitro. Starch granules from transformants in which MAT alone was expressed also showed MAT activity, indicating that MAT is accumulated in starch granules, and has affinity for starch by itself. Furthermore, starch granule morphology was altered, and fusion proteins containing MAT and SBD seemed to have a higher affinity for starch granules than two appended SBDs. These results are discussed against the background of the quaternary structure of MAT.
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- 2007
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12. Fusion proteins comprising the catalytic domain of mutansucrase and a starch-binding domain can alter the morphology of amylose-free potato starch granules during biosynthesis
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Luc C. J. M. Suurs, Jean-Paul Vincken, Geraldine Kok-Jacon, Qin Ji, Richard G. F. Visser, and Farhad Nazarian Firouzabadi
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Sucrose ,gtf-i ,Starch ,Recombinant Fusion Proteins ,glucansucrase ,reduction ,Biology ,acceptor reactions ,nucleotide-sequence ,chemistry.chemical_compound ,Laboratorium voor Plantenveredeling ,Amylose ,Catalytic Domain ,expression ,Genetics ,Amyloplast ,gene ,Potato starch ,Plant Proteins ,Solanum tuberosum ,Models, Genetic ,plants ,EPS-3 ,dextransucrase ,fungi ,Granule (cell biology) ,Glycosyltransferases ,food and beverages ,Plants, Genetically Modified ,Fusion protein ,Protein Structure, Tertiary ,Plant Tubers ,Plant Breeding ,Cell Transformation, Neoplastic ,Biochemistry ,chemistry ,Amylopectin ,glucosyltransferase ,Animal Science and Zoology ,Agronomy and Crop Science ,Sucrase ,Biotechnology ,Starch binding - Abstract
It has been shown previously that mutan can be co-synthesized with starch when a truncated mutansucrase (GtfICAT) is directed to potato tuber amyloplasts. The mutan seemed to adhere to the isolated starch granules, but it was not incorporated in the starch granules. In this study, GtfICAT was fused to the N- or C-terminus of a starch-binding domain (SBD). These constructs were introduced into two genetically different potato backgrounds (cv. Kardal and amf), in order to bring GtfICAT in more intimate contact with growing starch granules, and to facilitate the incorporation of mutan polymers in starch. Fusion proteins of the appropriate size were evidenced in starch granules, particularly in the amf background. The starches from the various GtfICAT/SBD transformants seemed to contain less mutan than those from transformants with GtfICAT alone, suggesting that the appended SBD might inhibit the activity of GtfICAT in the engineered fusion proteins. Scanning electron microscopy showed that expression of SBD-GtfICAT resulted in alterations of granule morphology in both genetic backgrounds. Surprisingly, the amf starches containing SBD-GtfICAT had a spongeous appearance, i.e., the granule surface contained many small holes and grooves, suggesting that this fusion protein can interfere with the lateral interactions of amylopectin sidechains. No differences in physico-chemical properties of the transgenic starches were observed. Our results show that expression of granule-bound and "soluble" GtfICAT can affect starch biosynthesis differently.
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- 2006
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13. Expression of an engineered granule-bound Escherichia coli glycogen branching enzyme in potato results in severe morphological changes in starch granules
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Luc C. J. M. Suurs, Farhad Nazarian-Firouzabadi, Qin Ji, Xing-Feng Huang, Richard G. F. Visser, Jean-Paul Vincken, and Luisa M. Trindade
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Starch ,Recombinant Fusion Proteins ,Mutant ,Plant Science ,chemistry.chemical_compound ,Laboratorium voor Plantenveredeling ,amylose ,Amylose ,1,4-alpha-Glucan Branching Enzyme ,freeze-thaw ,Levensmiddelenchemie ,Glycogen branching enzyme ,amylopectin ,Amylase ,Solanum tuberosum ,biology ,Food Chemistry ,Escherichia coli Proteins ,Granule (cell biology) ,fungi ,food and beverages ,Plants, Genetically Modified ,Fusion protein ,gene-expression ,beta-amylase ,Plant Breeding ,arabidopsis ,synthase ,Biochemistry ,chemistry ,Amylopectin ,binding domain ,biology.protein ,EPS ,biosynthesis ,protein ,Agronomy and Crop Science ,Biotechnology - Abstract
The Escherichia coli glycogen branching enzyme (GLGB) was fused to either the C- or N-terminus of a starch-binding domain (SBD) and expressed in two potato genetic backgrounds: the amylose-free mutant (amf) and an amylose-containing line (Kardal). Regardless of background or construct used, a large amount of GLGB/SBD fusion protein was accumulated inside the starch granules, however, without an increase in branching. The presence of GLGB/SBD fusion proteins resulted in altered morphology of the starch granules in both genetic backgrounds. In the amf genetic background, the starch granules showed both amalgamated granules and porous starch granules, whereas in Kardal background, the starch granules showed an irregular rough surface. The altered starch granules in both amf and Kardal backgrounds were visible from the initial stage of potato tuber development. High-throughput transcriptomic analysis showed that expression of GLGB/SBD fusion protein in potato tubers did not affect the expression level of most genes directly involved in the starch biosynthesis except for the up-regulation of a beta-amylase gene in Kardal background. The beta-amylase protein could be responsible for the degradation of the extra branches potentially introduced by GLGB.
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- 2013
14. A study of possibility of expression of an alternasucrase gene in sugar beet to produce alternan biopolymer
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Farhad Nazarian-Firouzabadi, Ahmad Ismaili, and Dariush goodarzi
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bacterium ,biotechnology ,gene transfer ,gene manipulation ,glucansucrases ,sugar plants ,Agriculture ,Biotechnology ,TP248.13-248.65 - Abstract
Objective Lactic acid bacteria (LAB) synthesize valuable industrial and pharmaceutical important biopolymers, such as Alternan, by expressing glycosyltransferase enzymes by utilizing extracellular sucrose. In this study, due to the importance of such versatile biopolymers in the industry and medicine, a gene encoding an Altranansucrase (Asr) was introduced to sugar beet plants. Materials and methods A gene encoding the Asr gene was isolated from Leuconostoc mesenteroides bacterium and introduced to sugar beet plants by using Agrobacterium-mediated transformation. Molecular techniques were used to analyse transgenic plants and sugar content of sugar beet lines. Results Out of 131 transformed explants, only three transgenic plants were produced, showing a transformation efficiency of 2.3%. The Asr gene integration in transgenic plants genome and expression were confirmed by specific PCR and semi-quantitative RT-PCR analysis, respectively. Sugar analysis of sugar beet transgenic plants showed that control plants with a 19.6% brix value (Sucrose) had more sucrose than transgenic plants with an average brix value of 14.4%. Brix in transgenic plants was lower than that of control plants. The amount of sugar (sucrose) in the transgenic asr-expressing plants reduced by 36.1% relative to the untransformed control plants. Conclusions The results of this study showed that Altrenansucrase can convert substantial amount of sugar beet sucrose into Alternan biopolymer, producing 36.6 mg/g FW alternan biopolymer with pharmaceutical and industrial applications.
- Published
- 2020
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