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The application of zero-valent iron particles (ZVI) for the treatment of heavily polluted environment and its biological effects have been studied for at least two decades. Still, information on the impact on bacterial metabolic pathways is lacking. This study describes the effect of microscale and nanoscale ZVI (mZVI and nZVI) on the abundance of different metabolic pathways in freshwater bacterial communities. The metabolic pathways were inferred from metabolism modelling based on 16S rRNA gene sequence data using paprica pipeline. The nZVI changed the abundance of numerous metabolic pathways compared to a less influencing mZVI. We identified the 50 most affected pathways, where 31 were related to degradation, 17 to biosynthesis, and 2 to detoxification. The linkage between pathways was two times higher in nZVI samples compared to mZVI, and was specifically higher considering the arsenate detoxification II pathway. Limnohabitans and Roseiflexus were linked to the same pathways in both nZVI and mZVI. The prediction of metabolic pathways increases our knowledge of the impacts of nZVI and mZVI on freshwater bacterioplankton.

Background Nanoscale zero-valent iron (nZVI) is commonly used for remediation of groundwater contaminated by chlorinated ethenes (CEs); however, its long-term reactivity and subsurface transport are limited. A novel nZVI–AC material, consisting of colloidal activated carbon (AC) with embedded nZVI clusters, was developed with the aim of overcoming the limitations of nZVI alone. Results Application of a limited amount of nZVI–AC to an oxic, nitrate-rich, highly permeable quaternary aquifer triggered time-limited transformation of CEs, with noticeable involvement of reductive dechlorination. Reductive dechlorination of CEs was dominantly abiotic, as an increase in the concentration of vinyl chloride (VC) and ethene did not coincide with an increase in the abundance of reductive biomarkers for complete dechlorination of CEs (Dehalococcoides, Dehalogenimonas, VC reductase genes vcrA and bvcA). Application of nZVI–AC under unfavourable hydrochemical conditions resulted in no dramatic change in the microbial community, the reducing effect resulting in temporal proliferation of nitrate and iron reducers only. At a later stage, generation of reduced iron induced an increase in iron-oxidizing bacteria. High concentrations and a continuous mass influx of competing electron acceptors (nitrate and dissolved oxygen) created unfavourable conditions for sulphate-reducers and organohalide-respiring bacteria, though it allowed the survival of aerobic microorganisms of the genera Pseudomonas, Polaromonas and Rhodoferax, known for their ability to assimilate VC or cis-1,2-dichloroethene. A potential for aerobic oxidative degradation of CE metabolites was also indicated by detection of the ethenotroph functional gene etnE. Conclusions This pilot study, based on the application of nZVI–AC, failed to provide a sustainable effect on CE contamination; however, it provided valuable insights into induced hydrogeochemical and microbial processes that could help in designing full-scale applications.

As nanoremediation strategies for in-situ groundwater treatment extend beyond nanoiron-based applications to adsorption and oxidation, ecotoxicological evaluations of newly developed materials are required. The biological effects of four new materials with different iron (Fe) speciations ([i] FerMEG12 - pristine flake-like milled Fe(0) nanoparticles (nZVI), [ii] Carbo-Iron® - Fe(0)-nanoclusters containing activated carbon (AC) composite, [iii] Trap-Ox® Fe-BEA35 (Fe-zeolite) - Fe-doped zeolite, and [iv] Nano-Goethite - ‘pure’ FeOOH) were studied using the unicellular green alga Chlamydomonas sp. as a model test system. Algal growth rate, chlorophyll fluorescence, efficiency of photosystem II, membrane integrity and reactive oxygen species (ROS) generation were assessed following exposure to 10, 50 and 500 mg L−1 of the particles for 2 h and 24 h. The particles had a concentration-, material- and time-dependent effect on Chlamydomonas sp., with increased algal growth rate after 24 h. Conversely, significant intracellular ROS levels were detected after 2 h, with much lower levels after 24 h. All Fe-nanomaterials displayed similar Z-average sizes and zeta-potentials at 2 h and 24 h. Effects on Chlamydomonas sp. decreased in the order FerMEG12 > Carbo-Iron® > Fe-zeolite > Nano-Goethite. Ecotoxicological studies were challenged due to some particle properties, i.e. dark colour, effect of constituents and a tendency to agglomerate, especially at high concentrations. All particles exhibited potential to induce significant toxicity at high concentrations (500 mg L−1), though such concentrations would rapidly decrease to mg or µg L−1 in aquatic environments, levels harmless to Chlamydomonas sp. The presented findings contribute to the practical usage of particle-based nanoremediation in environmental restoration.

While nano-scale and micro-scale zero-valent iron (nZVI and mZVI) particles show high potential for remediation of polluted soil aquifers and elimination of cyanobacterial blooms, this has required their release into the environment. This study compares the impact of 100 mg L−1 of nZVI and mZVI on natural planktonic microorganisms from a reservoir, incubated in 1.5 L batches over 21 days. In addition to counting cyanobacterial and algal cell numbers, bacterial community structure was assessed using Ion Torrent sequencing and the number of cultivable bacteria determined using standard cultivation methods. Surprisingly, while mZVI had no significant effect on algal cell number, cyanobacteria numbers increased slightly after 14 days (P < 0.05). Algae were only marginally affected by nZVI after seven days (P < 0.05), while cyanobacteria numbers remained unaffected after 21 days. Total species richness and less common bacteria increased significantly when treated with mZVI (compared to nZVI). The abundance of Limnohabitans (Betaproteobacteria), Roseiflexus (Chloroflexi), hgcl_clade (Actinobacteria) and Comamonadaceae_unclassified (Betaproteobacteria) increased under nZVI treatment, while mZVI enhanced Opitutae_vadinHA64 (Verrucomicrobia) and the OPB35_soil_group (Verrucomicrobia). Interestingly, the number of cultivable bacteria increased significantly after three days in water with nZVI, and further still after seven days. nZVI shaped bacterial community both directly, through release of Fe(II)/Fe(III), and indirectly, through rapid oxygen consumption and establishment of reductive conditions. The strong physico-chemical changes caused by nZVI proved temporary; hence, it can be assumed that, under natural conditions in resilient reservoirs or lakes, microbial plankton would recover within days or weeks.

Bio-based plastics, produced from renewable biomass sources, may contribute to lowering greenhouse gases and the demand for fossil resources. However, their environmental fate is not well understood. Here, we compared the impacts of industrially produced granules (G) and micro-debris (MD) from three pristine bio-based plastics: high-density polyethylene (HDPE), polylactic acid (PLA) and poly(3-hydroxybutyrate-co-3-hydroxyvalerate) (PHBV) on natural bacterial communities in seawater and freshwater using metagenomics. After one month, we found a dissimilarity between the microbial communities forming a biofilm on the plastics and planktonic bacteria. Further, different bacterial groups became dominant on different bio-based plastics, i.e. Burkholderiaceae, Solimonadaceae, Oleiphilaceae, and Sneathiellaceae on HDPE and Alteromonadaceae on PLA and Rhodobacteraceae on PHBV in seawater, and Beijerinckiaceae and Chitinophagaceae on HDPE, Microtrichaceae on PLA and Caulobacteraceae and Sphingomonadaceae on PHBV in freshwater. Variovorax, Albimonas and Sphingomonas genera were recorded on bio-based plastics in both seawater and freshwater. This study describes how different bio-based plastic materials and granule sizes influence the development of natural bacterial communities.

Organic–inorganic perovskite solar cells (PSCs) are promising candidates as photovoltaic cells. Recently, they have attracted significant attention due to certified power conversion efficiencies exceeding 23%, low–cost engineering, and superior electrical/optical characteristics. These PSCs extensively utilize a perovskite–structured composite with a hybrid of Pb-based nanomaterials. Operation of them may cause the release of Pb-based nanoparticles. However, limited information is available regarding the potential toxicity of Pb-based PSCs on various organisms. This study conducted a battery of in vitro and in vivo toxicity bioassays for three quintessential Pb-based PSCs (CH3NH3PbI3, NHCHNH3PbBr3, and CH3NH3PbBr3) using progressively more complex forms of life. For all species tested, the three different perovskites had comparable toxicities. The viability of Caco–2/TC7 cells was lower than that of A549 cells in response to Pb-based PSC exposure. Concentration–dependent toxicity was observed for the bioluminescent bacterium Vibrio fischeri, for soil bacterial communities, and for the nematode Caenorhabditis elegans. Neither of the tested Pb-based PSCs particles had apparent toxicity to Pseudomonas putida. Among all tested organisms, V. fischeri showed the highest sensitivity with EC50 values (30 min of exposure) ranging from 1.45 to 2.91 mg L-1. Therefore, this study recommends that V. fischeri should be preferably utilized to assess.PSC toxicity due to its increased sensitivity, low costs, and relatively high throughput in a 96–well format, compared with the other tested organisms. These results highlight that the developed assay can easily predict the toxic potency of PSCs. Consequently, this approach has the potential to promote the implementation of the 3Rs (Replacement, Reduction, and Refinement) principle in toxicology and decrease the dependence on animal testing when determining the safety of novel PSCs.

Recently, the green synthesis of metal nanoparticles has attracted wide attention due to its feasibility and very low environmental impact. This approach was applied in this study to synthesise nanoscale gold (Au), platinum (Pt), palladium (Pd), silver (Ag) and copper oxide (CuO) materials in simple aqueous media using the natural polymer gum karaya as a reducing and stabilising agent. The nanoparticles’ (NPs) zeta-potential, stability and size were characterised by Zetasizer Nano, UV–Vis spectroscopy and by electron microscopy. Moreover, the biological effect of the NPs (concentration range 1.0–20.0 mg/L) on a unicellular green alga (Chlamydomonas reinhardtii) was investigated by assessing algal growth, membrane integrity, oxidative stress, chlorophyll (Chl) fluorescence and photosystem II photosynthetic efficiency. The resulting NPs had a mean size of 42 (Au), 12 (Pt), 1.5 (Pd), 5 (Ag) and 180 (CuO) nm and showed high stability over 6 months. At concentrations of 5 mg/L, Au and Pt NPs only slightly reduced algal growth, while Pd, Ag and CuO NPs completely inhibited growth. Ag, Pd and CuO NPs showed strong biocidal properties and can be used for algae prevention in swimming pools (CuO) or in other antimicrobial applications (Pd, Ag), whereas Au and Pt lack these properties and can be ranked as harmless to green alga. Electronic supplementary material The online version of this article (10.1186/s11671-018-2575-5) contains supplementary material, which is available to authorized users.

Elementary mode analysis (EMA) identifies all possible metabolic states of the cell metabolic network. Investigation of these states can provide a detailed insight into the underlying metabolism in the cell. In this study, the flux states of Scheffersomyces (Pichia) stipitis metabolism were examined. It was shown that increasing oxygen levels led to a decrease of ethanol synthesis. This trend was confirmed by experimental evaluation of S. stipitis in glucose-xylose fermentation. The oxygen transfer rate for an optimal ethanol production was 1.8 mmol/l/h, which gave the ethanol yield of 0.40 g/g and the ethanol productivity of 0.25 g/l/h. For a better understanding of the cell's regulatory mechanism in response to oxygenation levels, EMA was used to examine metabolic flux patterns under different oxygen levels. Up- and downregulation of enzymes in the network during the change of culturing condition from oxygen limitation to oxygen sufficiency were identified. The results indicated the flexibility of S. stipitis metabolism to cope with oxygen availability. In addition, relevant genetic targets towards improved ethanol-producing strains under all oxygenation levels were identified. These targeted genes limited the metabolic functionality of the cell to function according to the most efficient ethanol synthesis pathways. The presented approach is promising and can contribute to the development of culture optimization and strain engineers for improved lignocellulosic ethanol production by S. stipitis.