1. Xenopus pitx3 target genes lhx1 and xnr5 are identified using a novel three-fluor flow cytometry-based analysis of promoter activation and repression
- Author
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Mohamed Fakhereddin, Cristine Smoczer, John W. Hudson, Samuel Abbott, Lara Nicole Hooker, and Michael J Crawford
- Subjects
0301 basic medicine ,Regulation of gene expression ,medicine.diagnostic_test ,HEK 293 cells ,Xenopus ,Promoter ,Biology ,biology.organism_classification ,Molecular biology ,eye diseases ,Flow cytometry ,Cell biology ,03 medical and health sciences ,030104 developmental biology ,Somitogenesis ,medicine ,Transcription factor ,Gene ,Developmental Biology - Abstract
Background: Pitx3 plays a well understood role in directing development of lens, muscle fiber, and dopaminergic neurons, however in Xenopus laevis, it may also play a role in early gastrulation and somitogenesis. Potential downstream targets of pitx3 possess multiple binding motifs that would not be readily accessible by conventional promoter analysis. Results: We isolated and characterized pitx3 target genes lhx1 and xnr5 using a novel three-fluor flow cytometry tool that was designed to dissect promoters with multiple binding sites for the same transcription factor. This approach was calibrated using a known pitx3 target gene, tyrosine hydroxylase. Conclusions: We demonstrate how flow cytometry can be used to detect gene regulatory changes with exquisite precision on a cell-by-cell basis, and establish that in HEK293 cells, pitx3 directly activates lhx1 and represses xnr5. This article is protected by copyright. All rights reserved.
- Published
- 2017
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