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Conventional karyotypes of Crocidura tanakae and C. attenuata collected from mainland China were examined by bone marrow and cell culture methods along with identification to species using molecular data. In contrast to C. tanakae from Taiwan, populations from mainland China were karyotypically polymorphic, varying in diploid number (2n) from 24 to 40 and fundamental number (FN) from 45 to 56. Autosomes are composed of 6–20 metacentric or submetacentric chromosomes, 0–8 subtelocentric chromosomes, and 0–24 telocentric chromosomes. These polymorphic karyotypes indicate the presence of two geographically separated races. The ancestral karyotype of C. tanakae potentially is the same as currently found on Taiwan: 2n = 40 and FN = 56. In contrast to C. tanakae, C. attenuata had a uniform karyotype (2n = 40, FN = 54) in mainland China, suggesting that previously reported karyotypic polymorphism in this species was an error due to the morphological crypsis between C. tanakae and C. attenuata in mainland China. The intricate karyotypic polymorphism of C. tanakae may be indicative of this species undergoing speciation.

Hantaviruses are harbored by multiple small mammal species in Asia, Europe, Africa, and the Americas. To ascertain the geographic distribution and virus-host relationships of rodent-borne hantaviruses in Japan, Vietnam, Myanmar, and Madagascar, RNAlater™-preserved lung tissues of 981 rodents representing 40 species, collected in 2011–2017, were analyzed for hantavirus RNA by RT-PCR. Our data showed Hantaan orthohantavirus Da Bie Shan strain in the Chinese white-bellied rat (Niviventer confucianus) in Vietnam, Thailand, orthohantavirus Anjo strain in the black rat (Rattus rattus) in Madagascar, and Puumala orthohantavirus Hokkaido strain in the grey-sided vole (Myodes rufocanus) in Japan. The Hokkaido strain of Puumala virus was also detected in the large Japanese field mouse (Apodemus speciosus) and small Japanese field mouse (Apodemus argenteus), with evidence of host-switching as determined by co-phylogeny mapping.

The Japanese archipelago is comprised of four main islands—Hokkaido, Honshu, Shikoku, and Kyushu—which contain high mountainous areas that likely allowed for lineage differentiation and population genetic structuring during the climatic changes of the late Pleistocene. Here, we assess the historical background of the evolutionary dynamics of herbivorous red-backed voles (Myodes) in Japan, examining the evolutionary trends of mitochondrial cytochrome b gene (Cytb) sequence variation. Four apparent signals from rapid expansion events were detected in three species, M. rufocanus and M. rutilus from Hokkaido and M. smithii from central Honshu. Taken together with results from previous studies on Japanese wood mice (Apodemus spp.), three of the expansion events were considered to be associated with predicted bottleneck events at the marine isotope stage (MIS) 4 period, in which glaciers are thought to have expanded extensively, especially at higher elevations. In the late Pleistocene, the possible candidates are transitions MIS 6/5, MIS 4/3, and MIS 2/1, which can be characterized by the cold periods of the penultimate glacial maximum, MIS 4, and the last glacial maximum, respectively. Our data further reveal the genetic footprints of repeated range expansion and contraction in the northern and southern lineages of the vole species currently found in central Honshu, namely M. andersoni and M. smithii, in response to climatic oscillation during the late Pleistocene. The time-dependent evolutionary rates of the mitochondrial Cytb presented here would provide a possible way for assessing population dynamics of cricetid rodents responding to the late Pleistocene environmental fluctuation.

Quaternary environmental changes fundamentally influenced the genetic diversity of temperate-zone terrestrial animals, including those in the Japanese Archipelago. The genetic diversity of present-day populations is taxon- and region-specific, but its determinants are poorly understood. Here, we analyzed cytochrome b gene (Cytb) sequences (1140 bp) of mitochondrial DNA (mtDNA) to elucidate the factors determining the genetic variation in three species of large moles: Mogera imaizumii and Mogera wogura, which occur in central and southern mainland Japan (Honshu, Shikoku, and Kyushu), and Mogera robusta, which occurs on the nearby Asian continent. Network construction with the Cytb sequences revealed 10 star-shaped clusters with apparent geographic affinity. Mismatch distribution analysis showed that modes of pairwise nucleotide differences (τ values) were grouped into five classes in terms of the level, implying the occurrence of five stages for rapid expansion. It is conceivable that severe cold periods and subsequent warm periods during the late Quaternary were responsible for the population expansion events. The first and third oldest events included island-derived haplotypes, indicative of the involvement of land bridge formation between remote islands, hence suggesting an association of the ends of the penultimate (PGM, ca. 130,000 years ago) and last (LGM, ca. 15,000 years ago) glacial maxima, respectively. Since the third event was followed by the fourth, it is plausible that the termination of the Younger Dryas and subsequent abrupt warming ca. 11,500 years ago facilitated the fourth expansion event. The second event most likely corresponded to early marine isotope stage (MIS) 3 (ca. 53,000 years ago) when the glaciation and subsequent warming period were predicted to have influenced biodiversity. Utilization of the critical times of 130,000, 53,000, 15,000, and 11,500 years ago as calibration points yielded evolutionary rates of 0.03, 0.045, 0.10 and 0.10 substitutions/site/million years, respectively, showing a time-dependent manner whose pattern was similar to that seen in small rodents reported in our previous studies. The age of the fifth expansion event was calculated to be 5800 years ago with a rate of 0.10 substitutions/site/million years ago during the mid-Holocene, suggestive of the influence of humans or other unspecified reasons, such as the Jomon marine transgression.

Karyotypes of four Chinese species of field mice of the genus Apodemus were examined, including Apodemus chevrieri (diploid chromosome number, 2n=48, fundamental number of autosomal arms, FNa=56), A. draco (2n=48, FNa=48), A. ilex (2n=48, FNa=48), and A. latronum (2n=48, FNa=48). Karyotypes of A. chevrieri, A. draco, and A. ilex are reported here for the first time, providing useful information for their species taxonomy. Determining the karyotypes of all species of Apodemus in Asia, both in this and previous studies, provides a solid overview of the chromosome evolution and species differentiation of the genus in East Asia. In addition to allopatric speciation, chromosome rearrangements likely played an important role in the formation of the four Apodemus species groups as well as speciation within each group in East Asia. For example, increased centromeric heterochromatin in A. latronum may have contributed to the post-mating reproductive isolation from the A. draco-A. ilex-A. semotus clade.

Glycosphingolipids (GSLs) from the silkworm Bombyx mori were identified and GSL expression patterns between larvae and pupae were compared. The structural analysis of neutral GSLs from dried pupae revealed the following predominant species: Glcβ1Cer, Manβ4Glcβ1Cer, GlcNAcβ3Manβ4Glcβ1Cer, Galβ3Manβ4Glcβ1Cer, GalNAcα4Galβ3Manβ4Glcβ1Cer, GlcNAcβ3Galβ3Manβ4Glcβ1Cer, Galα4Galβ3Manβ4Glcβ1Cer and (GalNAcα4)1-4 GalNAcα4Galβ3Manβ4Glcβ1Cer. Lin-ear elongation of α4-GalNAc was observed at the non-reducing end of Galβ3Manβ4Glcβ1Cer with up to five GalNAc repeats. The arthro-series GSL GlcNAcβ3Manβ4Glcβ1Cer, a characteristic GSL-glycan sequence of other Arthropoda, was detected in silkworms. The main ceramide species in each purified GSL fraction were h20:0-d14:1 and h22:0-d14:1. GSL expression patterns in larvae and pupae were compared using thin-layer chromatography, which demonstrated differences among acidic, polar and neutral GSL fractions, while the zwitterionic fraction showed no difference. Neutral GSLs such as ceramides di-, tri- and tetrasaccharides in larvae showed less abundant than those in pupae. MALDI-TOF MS analysis revealed that larval GSLs contained four types of ceramide species, whereas pupal GSLs contained only two types. The structural analysis of neutral GSLs from silkworms revealed a novel series of GSLs. The comparison of GSL expression patterns between larvae and pupae demonstrated differences in several fractions. Alterations in GSL ceramide composition between larvae and pupae were observed by MALDI-TOF MS analysis.

For the majority of Rhinolophus species a karyotype consisting of either 58 or 62 chromosomes was reported. The members of the R. trifoliatus clade are therefore distinguished from other rhinolophids by low diploid chromosome numbers (2n) and a high rate of chromosomal changes. Recently, based on cytogenetic characters, a cryptic species, R. luctoides, was described and a subspecies, R. luctusmorio, was elevated to species rank. In the present work, the karyotypes of a male bat from Vietnam and a female one from China, both classified as R. luctus by morphological characters, were studied by G-banding and fluorescence in situ hybridization with whole chromosome painting probes derived from Aselliscus stoliczkanus. In the male specimen from Vietnam, the composition of the 15 autosomal bi-armed pairs (2n = 32, FN = 60) is identical to that of R. luctoides from Malaysia. For reason of differences in body size and baculum length as well as in skull morphology, this specimen is provisionally treated as R. cf. ...

Karyotypes of Dremomys pernyi from Kanding, Sichuan Province, China and D. pyrrhomerus from Nanling, Guangdong Province, China were examined. The karyotype of D. pernyi was of 2n = 40 and FNa = 72, while that of D. pyrrhomerus was of 2n = 38 and FNa = 70. Karyotype of D. pernyi from Kanding was different in 2n and FNa from reported karyotype of conspecific population from Taiwan, and it is suggested that the Taiwan population represents a distinct species D. owstoni from D. pernyi. The difference between karyotypes of D. pernyi and D. pyrrhomerus may involve at least a Robertsonian rearrangement and a heterochromatin addition.

The Taiwanese gray shrew (Crocidura tanakae) and Asian gray shrew (C. attenuata) are so similar in size and morphology that the taxonomic status of the former has changed several times since its description;C. tanakaehas also been regarded as an endemic species of Taiwan Island. In recent years, molecular identification has led to several reports ofC. tanakaebeing distributed in the mainland of China. In this study, we determine the geographical distribution ofC. attenuataandC. tanakaebased on more than one hundred specimens collected during 2000 to 2018 over a wide area covering the traditional ranges of the two species in the mainland of China, and show a substantial revision of their distributions. Among 110 individuals, 33C. attenuataand 77C. tanakaewere identified byCytbgene and morphologies. Our results show, (1)C. attenuataandC. tanakaeare distributed sympatrically in the mainland of China; (2) contrary to the previous reports, the distribution range ofC. attenuatais restricted and much smaller than that ofC. tanakaein the mainland of China; (3) Hainan Island, like Taiwan Island, is inhabited byC. tanakaeonly according to the present data.

The subfamily Murininae has high species diversity in Vietnam, but taxonomic studies are limited. In this paper, we describe a new species of the genus Murina based on a specimen collected from Ngoc Linh Nature Reserve, Kon Tum Province in the Central Highlands of Vietnam. It is a medium-sized species with ‘suilla-type’ dentition. A taxonomic review of Murininae from Vietnam was also conducted based on combined morphological, DNA, and karyological characteristics. Molecular phylogenetic analyses based on the mitochondrial cytochrome c oxidase subunit (COI) gene supported the subfamily Murininae, while the genus Murina proved to be paraphyletic in relation to the genera Harpiocephalus and Harpiola. Fourteen species of the genus Murina, one species of Harpiocephalus, and one species of Harpiola are recognized from Vietnam. Murina tiensa is regarded as a junior synonym of M. harrisoni; strong sexual dimorphism was observed in M. harrisoni. Relations between forearm length and total length of skull showed dif...

Human zoonotic onchocercosis is caused by Onchocerca dewittei japonica, parasitic in wild boars (Sus scrofa leucomystax) in Japan. Previously, microfilariae longer than those of Onchocerca dewittei japonica were observed in skin snips from wild boars during the study of O. dewittei japonica. Moreover, the third-stage larvae (L3) of these longer microfilariae were obtained from the blackfly Simulium bidentatum after experimental injections. Based on morphometric and molecular studies, similar L3 were found in blackflies during fieldwork in Oita, Japan. However, except for O. dewittei japonica, adult worms of Onchocerca have not been found in wild boars. In this study, we discovered adult females of a novel Onchocerca species in the skin of a wild boar in Oita, and named it Onchocerca takaokai n. sp. Females of this new species had longer microfilariae and differed from O. dewittei japonica in terms of their morphological characteristics and parasitic location. The molecular characteristics of the cytochrome c oxidase subunit 1 and 12S rRNA genes of the new species were identical to those of the longer microfilariae and L3 previously detected, but they differed from those of O. dewittei japonica at the species level. However, both species indicated a close affinity among their congeners and Onchocerca ramachandrini, parasitic in the warthog in Africa, was basal in the Suidae cluster of the 12S rRNA tree.

Long-eared bats of the genus Plecotus are known to occur predominantly in the Palaearctic Region, and at the margins of the Afrotropical and Indomalayan regions. In 2014, four specimens of the genus Plecotus were collected in a high altitude montane temperate forest in the Hoang Lien National Park, northern Vietnam, representing the first record of Plecotus from the Indochinese subregion, and considerably extending the southern border of the genus' distribution range. Detailed morphological comparisons and phylogenetic reconstructions based on the mitochondrial control region suggest that these specimens can be assigned to P. homochrous, a mountain-dwelling bat from the Himalayas. Moreover, for the first time, we provide information on the species' echolocation call and karyological characteristics. Our results also indicate that the taxonomic status of some Plecotus species recognized by previous studies is doubtful and must be revised. Although rarely encountered, Plecotus is likely to be widely distributed at the higher elevations of the Himalayan chain in southern China and the adjoining northern areas of Vietnam, Laos, and Myanmar. Our findings strongly support the importance of the mountainous areas within the Indo-Burma biodiversity hotspot.

Background The filarial nematodes Wuchereria bancrofti (Cobbold, 1877), Brugia malayi (Brug, 1927) and B. timori Partono, Purnomo, Dennis, Atmosoedjono, Oemijati & Cross, 1977 cause lymphatic diseases in humans in the tropics, while B. pahangi (Buckley & Edeson, 1956) infects carnivores and causes zoonotic diseases in humans in Malaysia. Wuchereria bancrofti, W. kalimantani Palmieri, Pulnomo, Dennis & Marwoto, 1980 and six out of ten Brugia spp. have been described from Australia, Southeast Asia, Sri Lanka and India. However, the origin and evolution of the species in the Wuchereria-Brugia clade remain unclear. While investigating the diversity of filarial parasites in Malaysia, we discovered an undescribed species in the common treeshrew Tupaia glis Diard & Duvaucel (Mammalia: Scandentia). Methods We examined 81 common treeshrews from 14 areas in nine states and the Federal Territory of Peninsular Malaysia for filarial parasites. Once any filariae that were found had been isolated, we examined their morphological characteristics and determined the partial sequences of their mitochondrial cytochrome c oxidase subunit 1 (cox1) and 12S rRNA genes. Polymerase chain reaction (PCR) products of the internal transcribed spacer 1 (ITS1) region were then cloned into the pGEM-T vector, and the recombinant plasmids were used as templates for sequencing. Results Malayfilaria sofiani Uni, Mat Udin & Takaoka, n. g., n. sp. is described based on the morphological characteristics of adults and microfilariae found in common treeshrews from Jeram Pasu, Kelantan, Malaysia. The Kimura 2-parameter distance between the cox1 gene sequences of the new species and W. bancrofti was 11.8%. Based on the three gene sequences, the new species forms a monophyletic clade with W. bancrofti and Brugia spp. The adult parasites were found in tissues surrounding the lymph nodes of the neck of common treeshrews. Conclusions The newly described species appears most closely related to Wuchereria spp. and Brugia spp., but differs from these in several morphological characteristics. Molecular analyses based on the cox1 and 12S rRNA genes and the ITS1 region indicated that this species differs from both W. bancrofti and Brugia spp. at the genus level. We thus propose a new genus, Malayfilaria, along with the new species M. sofiani. Electronic supplementary material The online version of this article (doi:10.1186/s13071-017-2105-9) contains supplementary material, which is available to authorized users.

Three distinct bamboo bat species (Tylonycteris) are known to inhabit tropical and subtropical areas of Asia, i.e., T. pachypus, T. robustula, and T. pygmaeus. This study performed karyotypic examinations of 4 specimens from southern Chinese T. p. fulvidus populations and one specimen from Thai T. p. fulvidus population, which detected distinct karyotypes (2n=30) compared with previous karyotypic descriptions of T. p. pachypus (2n=46) and T. robustula (2n=32) from Malaysia. This finding suggested a cryptic Tylonycteris species within T. pachypus complex in China and Thailand. Morphometric studies indicated the difficulty in distinguishing the cryptic species and T. p. pachypus from Indonesia apart from the external measurements, which might be the reason for their historical misidentification. Based on 623 bp mtDNA COI segments, a phylogeographic examination including T. pachypus individuals from China and nearby regions, i.e., Vietnam, Laos, and Cambodia, was conducted to examine the population genetic structure. Genealogical and phylogeographical results indicated that at least two diverged lineages existed in these regions (average 3.4 % of Kimura 2-parameter distances) and their population structure did not match the geographic pattern. These results suggested that at least two historical colonizations have occurred by the cryptic species. Furthermore, through integration of traditional and geometric morphological results, morphological differences on zygomatic arches, toothrows and bullae were detected between two lineages in China. Given the similarity of vegetation and climate of Guangdong and Guangxi regions, we suggested that such differences might be derived from their historical adaptation or distinct evolutionary history rather than the differences of habitats they occurred currently.

We assessed dispersal and vicariant events in four species of Japanese moles in the genera Mogera and Euroscaptor to better understand the factors shaping intra- and interspecific differentiation in Japanese moles. We used the combined viewpoints of molecular phylogeny and historical geology using nucleotide sequences of mitochondrial (cytochrome b; Cytb) and nuclear (A2ab, Bmp4, Tcf25, vWf) genes. The divergence times estimated from the molecular data were verified with available geological data on the chronology of fluctuations in sea level in the Korea Strait, assuming sequential migration and speciation events. This produced possible migration times of 5.6, 3.5, 2.4, and 1.3 million years ago for four species of Japanese moles, Euroscaptor mizura, Mogera tokudae, M. imaizumii, and M. wogura, respectively. For the western Japanese mole M. wogura, Cytb sequences revealed four major phylogroups with strong geographic affinities in southwestern Central Honshu (I), western Honshu/Shikoku (II), Kyushu/westernmost Honshu (III), and Korea/Russian Primorye (IV). The nuclear gene sequences supported the distinctiveness of phylogroups I and IV, indicating long, independent evolutionary histories. In contrast, phylogroups II and III were merged into a single geographic group based on the nuclear gene data. Intraspecific divergences in M. imaizumii and M. tokudae were rather apparent in Cytb but not in nuclear gene sequences. The results suggest that repeated dispersal events have occurred between the Asian continent and the Japanese Islands, and intensive vicariant events associated with abiotic and biotic factors have created higher levels of species and genetic diversities in moles occurring on the Japanese Islands.

The genus Kerivoula includes about 20 species, and 12 species have been recorded in the Indomalayan Region, including recently described species such as K. kachinensis from northern Myanmar, K. krauensis from Peninsular Malaysia, and K. titania from Southeast Asia (Corbet and Hill 1992; Bates et al. 2004, 2007; Simmons 2005; Thong et al. 2006; Francis et al. 2007). Among them, K. titania was recently described by Bates et al. (2007) from the Seima Biodiversity Conservation Area, Cambodia, and it is widely distributed in mainland Southeast Asia in 13 localities in five countries: Myanmar, Thailand, Lao PDR, Cambodia, and Vietnam (Bates et al. 2007). Only two Kerivoula bats have been recorded from China, K. picta and K. hardwickii (Zhang 1997; Wang 2003). Recently, we collected eight specimens identified as K. titania for the first time from Hainan Island and Taiwan as reported below.

In December 2005, three bats of indeterminate identity were captured in northern Japan. Their forearm lengths were slightly smaller than the average for Vespertilio sinensis. We identified these three individuals as V. murinus using both morphological and molecular approaches, and discussed their possible migration or vagrancy routes. Prior to the first record of V. murinus on Rebun Island near Hokkaido in 2002, there was no record of this species in Japan. These new occurrences illustrate the importance of determining possible migration or vagrancy routes of bats for understanding and preventing the spread of zoonotic diseases.

Karyotypes and chromosomal data are presented for eight bat species representing two families (Rhinolophidae and Vespertilionidae) from Hainan Island, China. The species investigated were Rhinolophus lepidus (2n = 62, FN = 60), R. pusillus (2n = 62, FN = 60), R. affinis (2n = 62, FN = 60), R. sinicus (2n = 36, FN = 60), Myotis horsfieldi (2n = 44, FN = 52), Pipistrellus abramus (2n = 26, FN = 44), Miniopterus australis (2n = 46, FN = 50) and M. schreibersii (2n = 46, FN = 50). The karyotype of Rhinolophus lepidus is reported for the first time.

The karyotypes of three shrew species (Mammalia, Soricomorpha, Soricidae) from Nepal were examined for the first time. Based on the karyotypes and overall differences in skull size, the current Episoriculus caudatus appeared to include two distinct species: the larger E. caudatus and the smaller Episoriculus sacratus. Episoriculus sacratus has three subspecies, E. s. soluensis in Nepal and Sikkim, E. s. umbrinus in Assam, Myanmar and the Yunnan Province of China, and E. s. sacratus in the Sichuan Province of China. Soriculus nigrescens had a diploid chromosome number (2n) and fundamental number (FN), including two X chromosomes, of 64 and 92, respectively, consisting of 11 metacentric or submetacentric, two subtelocentric and 18 acrocentric pairs of autosomes, a metacentric X and an acrocentric Y chromosome. Episoriculus sacratus soluensis had 2n = 74 and FN = 126, consisting of 12 metacentric or submetacentric, 13 subtelocentric and 11 acrocentric pairs of autosomes, a submetacentric X and an acrocentric Y chromosome. Episoriculus caudatus had 2n = 60 and FN = 118, consisting of 19 metacentric or submetacentric, nine subtelocentric and one acrocentric pair of autosomes, a subtelocentric X and an acrocentric Y chromosome. The karyotypes of these three species are characterized by their large 2n and FN values compared with other Soricidae.

A new species of the Rhinolophus philippinensis group (Chiroptera: Rhinolophidae) is described from Guangdong, Guangxi, and Jiangxi Provinces in China. Rhinolophus huananus n. sp. is characterized by the horseshoe, as well as by external and cranial characteristics that separate it at the species level from the other members of the philippinensis group. One of the small species of the philippinensis group, R. huananus is intermediate in size between smaller R. siamensis and larger R. macrotis.

Onchocerca eberhardi n. sp. from the sika deer, Cervus nippon , in Japan is described. Adult worms lived in the carpal ligament; infection reached high levels (up to 25 female and 16 male worms in a single carpal limb). Skin dwelling microfilariae were mainly found in the ears. Prevalence of infection was 81 % at the type locality, Mt. Sobo, in Kyushu. The new material was compared to the 31 species of Onchocerca presently known. Onchocerca eberhardi n. sp. females were characterized by a long slender anterior end and a thin esophagus ≤ 1 mm long with no or only a slight glandular region. The vulva was located near the level of the mid-esophagus and the cuticle had transverse external ridges and internal striae (two striae between adjoining ridges). The most similar species were O. stilesi (re-examined), O. lienalis , and to a lesser extent O. gutturosa, all from bovids (cattle). Two main lineages of Onchocerca are recognized in cervids with either primitive or with derived characteristics (as exemplified by the new species). The species in both lineages are not restricted to cervids but are also found in bovids in the Holarctic region, suggesting that the species diversified in the two host groups simultaneously, when these host groups lived in the same geographic area.

We surveyed the central mountains and southeastern region of Taiwan and collected 11 specimens of a new species of mole, genus Mogera. The specimens were characterized by a small body size, dark fur, a protruding snout, and a long tail; these characteristics are distinct from those of the Taiwanese lowland mole, M. insularis (Swinhoe, 1862). A phylogenetic study of morphological, karyological and molecular characters revealed that Taiwanese moles should be classified as two distinctive species: M. insularis from the northern and western lowlands and the new species from the central mountains and the east and south of Taiwan. The skull of the new species was slender and delicate compared to that of M. insularis. Although the karyotypes of two species were identical, the genetic distance between them was sufficient to justify considering each as a separate species. Here, we present a detailed specific description of the new species and discuss the relationship between this species and M. insularis based on ecological characteristics and geographic distributions.

We investigated karyotypes, mitochondrial cytochromeb gene sequences, and cranial morphometries of the water shrewsChimarrogale himalayica (Gray, 1842) andC. platycephala (Temminck, 1842) (Insectivora, Soricidae). Karyotypes ofC. himalayica from Taiwan andC. platycephala are 2n=52 and FNa=100. Autosomes consisted of 21 large-to-small metacentric or submetacentric pairs, and 4 medium-to-small subtelocentric pairs. The X and Y chromosomes were medium submetacentric and small acrocentric, respectively. The karyotypes ofC. himalayica andC. platycephala were very similar. Secondary constrictions were observed in the largest metacentric pair in both species. In the 930 base-pairs of the cytochromeb gene,C. himalayica from Taiwan andC. platycephala diverged with 9.46% sequence difference; each species diverged fromC. phaeura with more than 14% sequence difference. The two speciesC. himalayica andC. platycephala were well distinguished by morphometric characters, but three subspecies ofC. himalayica were not clearly separated. We suggest thatC. platycephala be treated as a valid species and separated fromC. himalayica in Taiwan.

The genus Crocidura is one of the largest genera among mammals and widely distributed in Eurasia, Africa, and Southeast Asia. We review the recent advances in taxonomic and phylogenetic studies of this genus in East and Southeast Asia. Sympatric distributions of two or more species are known in several localities. Karyotypes of East and Southeast Asian species are divided into several groups. From karyological comparison and molecular phylogeny, those groups are suggested to have formed by geographical isolation in islands and in the continent in East and Southeast Asia. To clarify evolutionary history of East and Southeast Asian species, comprehensive studies with the West Asian and European species from karyological and molecular approaches are desired.

The complete mitochondrial genome of Perny's long-nosed squirrel (Dremomys pernyi) was firstly sequenced and characterized. The genome was 16,573 bp in length, and its composition and arrangement of genes were analogous to other rodents. The sequences of 13 protein-coding genes were used to construct phylogenetic tree for D. pernyi and other 13 sciurid species available on GenBank. To date, this is the first species whose complete mitochondrial genome sequence was sequenced in genus Dremomys. Our results will provide information for further molecular studies.

In this study, we report the nearly complete mitochondrial genome of a Chinese pygmy dormouse Typhlomys cinereus (Rodentia: Platacanthomyidae). The 15,011 bp genome is consisted of 13 protein-coding genes, 16S rRNA, 21 tRNAs, partial 12S rRNA and control region. A phylogenetic tree was built using 12 protein-coding genes of 19 species from Dipodoidea and Muroidea. Our result shows that T. cinereus represents the earliest split within Muroidea. The genome would contribute to further study of phylogeny in Muroidea and Rodentia.

This study investigated geographic variation in the Asian lesser white-toothed shrew, Crocidura shantungensis Miller, 1901, among a number of localities in East Asia, including the Korean Peninsula, Tsushima Island, Cheju Island, and Taiwan, using univariate and multivariate analyses of cranial morphometric characters. Sexual differences were found in Taiwanese shrews, but were not evident in those from Korea or Tsushima. The samples from Taiwan had a larger overall cranial size than those from Korea and Tsushima, and were well separated from the latter two samples in the discriminant analyses. The overall size of the Cheju shrews was also greater, but lay within the variation of those from Taiwan. Crocidura dsinezumi quelpartis Kuroda, 1934, described from Cheju Island, is actually a junior synonym of C. shantungensis, and is not related to C. dsinezumi.

Pairing of the X and Y chromosomes during meiotic prophase and the G- and C-banding patterns were analysed in Microtus sikimensis. The karyotype of M. sikimensis from central Nepal, has 2n = 48 and FNa = 56. It has been derived from the all single-armed karyotype of M. carruthersi through a unique course of evolution. There is a synapsis between the X and Y chromosomes at pachytene and end-to-end association from diakinesis to metaphase I. Microtus sikimensis has no close karyological or morphological relationship to the other synaptic species studied so far. These data confirm that several species or lineages with synaptic condition exist in the genus Microtus, and that the ancestor of Microtus had synaptic sex chromosomes.

Le caryotype de la taupe de Siberie Talpa altaica (32 autosomes dont 13 paires de metacentriques et submetacentriques et 3 paires de subtelocentriques, selon les etudes precedentes) a ete etudie en detail. Le chromosome 1 est le plus grand element de ce caryotype: il porte un bloc heterochromatique riche en GC sur tout son bras court. Ce segment montre un heteromorphisme entre les bivalents. Chez certaines taupes nord-americaines et asiatiques, la structure caryotypique, qui comprend seulement un chromosome beaucoup plus grand, est comparable; ces chromosomes ont ete consideres comme homologues par les auteurs precedents. Nous concluons cependant que le chromosome 1 de T. altaica est derive du chromosome subtelocentrique 16 de la taupe espagnole T. occidentalis, qui a ete etudiee par banding et par duplication heterochromatique C. Nous pensons qu'il n'y a la qu'une ressemblance superficielle avec les especes nord-americaines et asiatiques de Talpidae. Cette observation nous incite a suggerer une homogeneite caryologique des especes europeennes et siberienne du genre Talpa.

A detailed analysis was done on the karyotypes of four species of mole in the genera Euroscaptor and Mogera using a G-banding technique. All four species examined had a chromosome number of 2n = 36, as reported previously. Euroscaptor mizura and M. wogura from Aichi Prefecture had almost the same chromosome constitution and G-banding patterns. These common karyotypes were considered to be equivalent to the hypothetical ancestral karyotype of Mogera, since two distinct genera derived from an ancestor share G-banding homologies. According to this hypothesis, the karyotype of M. imaizumii might have been derived from the ancestral karyotype through pericentric inversion in one pair of acrocentrics, chromosome 11. Two geographically isolated populations of M. tokudae had different karyotypes: the Echigo population had the same karyotype as M. imaizumii, whereas the Sado population had a derivative karyotype that was able to be explained by pericentric inversions in three pairs of acrocentrics, remain...

The taxonomic status of the Senkaku mole, Nesoscaptor uchidai Abe, Shiraishi et Arai, 1991 (Mammalia: Insectivora: Talpidae), described from Uotsurijima in the Senkaku Group, Ryukyu Archipelago, was re-evaluated. Morphological analyses suggest that N. uchidai is most similar to Mogera insularis from Taiwan, although several morphological characters, such as the number of premolars and the shapes of the anterior portion of the palate, zygomatic arch, auditory bulla, and coronoid process, differentiate N. uchidai from M. insularis. Therefore, we synonymize the monotypic genus Nesoscaptor Abe, Shiraishi et Arai, 1991 with the genus Mogera Pomel, 1848, and define Mogera uchidai (Abe, Shiraishi et Arai, 1991) as a valid species endemic to Uotsurijima. In addition, we analyzed morphological variation within M. insularis, such as variation in the second upper premolar pair, overall cranial size, and the breadth of the rostrum and palate. Some of this variation may be associated with topographical and environmental factors in its habitat.

Karyotypes of the greater Japanese shrew-mole, Urotrichus talpoides (Talpidae), collected from 57 localities in Japan were studied by conventional, G- and C-band staining techniques to elucidate geographical chromosomal variations, the mechanism of changes in chromosomes, and the distribution patterns of karyotypic races. Shrew-mole samples examined could be divided geographically into two slightly divergent chromosomal forms designated as the western and eastern races. These two karyotypic races had the same diploid number (34) and fundamental number (64), but they had autosomes with different makeups. A comparison of conventional karyotypes showed a distinct intraspecific variation in shape of autosomal pair no. 14 which was classified as subtelocentric in the western race and as metacentric in the eastern race. G- and C-banding analyses revealed that karyotypic variation found in no. 14 pair was involved in pericentric inversion and quantitative changes in constitutive heterochromatin. Intrasp...

Phylogenetic relationships among the East Asian species of the genus Crocidura (Mammalia, Insectivora, Soricidae) were inferred from the partial sequences (402 base pairs) of the mitochondrial cyto-chrome b gene. Six species of Crocidura and one representative of another insectivoran genus Suncus were examined. In the neighbor joining tree, four distinct lineages were recognized: C. lasiura from northeastern China and Korea, and C. dsinezumi from the main-islands of Japan; C. attenuata from Taiwan; C. watasei from the Amami and Okinawa Groups, and S. murinus from the Miyako Group; and C. suaveolens from Tsushima and Taiwan, and C. sibirica from Central Asia in Russian territory. All these lineages excluding C. lasiura and C. dsinezumi were also recognized by the maximum parsimony analysis. Clustering of C. watasei with S. murinus suggested the non-monophyly of the genus Crocidura as of the present definition. Biogeo-graphical implications of the present results were also discussed.

We compared partial sequences (402 bp) of the mitochondrial cytochrome b gene in 68 individuals of martens (Martes), weasels (Mustela) and their relatives from the Northern Hemisphere to identify the modes of geographic differentiation in each species. We then compared complete sequences (1140 bp) of the gene in 17 species of the family Mustelidae to know the spatial and temporal modes of speciation, constructing linearized trees with transversional substitutions for deeper lineage divergences and with transversions and transitions for younger lineages. Our data suggested that these lineages of Martes and Mustela differentiated in a stepwise fashion with five radiation stages from the generic divergences (stage I) to the intraspecific divergences (stage V), during the last 10 or 20 million years as the fossil evidence suggests. In the lineage of Martes, the first offshoots are of Martes flavigula, M. pennanti, and Gulo gulo (stage II), the second is M. foina (stage III), and the third are M. americana, M. martes, M. melampus, and M. zibellina (stage IV). The divergence of the lineages of Mustela is likely to have taken place concurrently with the radiations of the Martes. These divergence processes are attributable in part to the geographic allocation along the two continents, North America and Eurasia, as well as among peripheral insular domains, such as Taiwan and the Japanese Islands. In addition, the Eurasian continent itself was shown to have been involved in the species diversification in the martens and weasels.

Phylogenetic relationships among various species of red-backed voles (Clethrionomys and Eothenomys) from areas surrounding the Sea of Japan were assessed by examining variation in the nuclear ribosomal DNA (rDNA) and mitochondrial DNA (mtDNA). The rDNA data indicated at least six phylogenetically distinct lineages represented by C. rufocanus, C. rex, C. rutilus, E. andersoni, E. smithii, and E. melanogaster. Lineages of rufocanus-rex and andersoni-smithii can be regarded as sister species, respectively. The mtDNA data generally were congruent but also suggested the splitting of two additional species lineages, C. regulus from C. rufocanus and E. imaizumii from E. andersoni-smithii. Our data revealed that these species have a complex evolutionary history, which includes interspecific gene flow.

A GTG-banding was used for a detailed comparative analysis of two 40-chromosome Crocidura species, Crocidura gueldenstaedtii and Crocidura dsinezumi. A high level of chromosomal homology was detected. A complex 520-bp EcoRI tandem repeat was isolated from C. dsinezumi. Using fluorescence in situ hybridization (FISH), this repeat was localized to centromeric regions of chromosomes in both Crocidura species.

A new species and one known species of the genus Vampirolepis and a new species of the genus Hymenolepis were obtained through the examination of 56 specimens of bats of eight species belonging to six genera in four families collected at eight sites of Sichuan, the People's Republic of China during the period between 21 and 29 August 1996. The following cestodes are recovered: Vampirolepis sichuanensis n.sp. from Rhinolophus cornutus; V. isensis Sawada 1966 from R. pearsoni ; and Hymenolepis kagurakoumori n.sp. from Hipposideros armiger. Vampirolepis sichuanensis closely resembles V. brevihamata , but differs from it in the larger blade and the larger number of rostellar hooks. Hymenolepis kagurakoumori n.sp. closely resembles H. rhinopomae , but differs from it in the larger strobila, the smaller scolex and the thicker outermost chorion of eggs.

Le caryotype conventionnel de deux especes de Soriculus endemiques de Taiwan, S. fumidus Thomas, 1913 et S. sodalis (Thomas, 1913) a ete obtenu. Les autosomes de S. fumidus consistent en 18 paires meta ou submetacentriques, 7 paires subtelocentriques et 5 paires acrocentriques. Le chromosome X est un grand submetacentrique et le Y un petit acrocentrique. Le nombre diploide est de 64, et le nombre fondamental de 116. Le caryotype de S. sodalis consiste en 20 paires meta ou submetacentriques, et paires subtelocentriques, soit un nombre diploide de 44 un nombre fondamental de 88. Les chromosomes sexuels de cette espece n'ont pas identifies. Les 2 especes de Soriculus de Taiwan sont donc clairement differentes quant a leur nombre de chromosomes et leur nombre fondamental. Une precedente mention d'un caryotype de S. caudatus fumidus (= S. fumidus) de Taiwan a 2n = 40 et FN = 56 est en fait basee sur des specimens de Crocidura attenuata mal identifies.

Acanthocheilonema delicata n. sp. (Filarioidea: Onchocercidae: Onchocercinae) is described based on adult filarioids and microfilariae obtained from subcutaneous connective tissues and skin, respectively, of Japanese badgers (Meles anakuma) in Wakayama Prefecture, Japan. No endemic species of the genus had been found in Japan. Recently, some filarioids (e.g., Acanthocheilonema reconditum, Dirofilaria spp., and Onchocerca spp.) have come to light as causative agents of zoonosis worldwide. The new species was readily distinguished from its congeners by morphologic characteristics such as body length, body width, esophagus length, spicule length, and the length of microfilariae. Based on the molecular data of the mitochondrial cytochrome c oxidase subunit 1 (cox1) gene, A. delicata n. sp. was included in the clade of the genus Acanthocheilonema but differed from two other congeneric species available for study, A. viteae and A. reconditum. Acanthocheilonema delicata n. sp. did not harbor Wolbachia. It is likely that the fauna of filarioids from mammals on the Japanese islands is characterized by a high level of endemicity.

The six species and three subspecies in the genus Chimarrogale (Soricomorpha: Soricidae) are commonly referred to as Asiatic water shrews. The Chimarrogale are the most widely distributed group of Nectogaline shrews, extending throughout the Oriental region and Japan. Because of the limited numbers of specimens available for study, the phylogenetic relationships and biogeographical history of this genus have not been comprehensively discussed. We used mitochondrial cytochrome b gene sequences to estimate phylogenetic relationships and divergence times among four Chimarrogale species, including all three subspecies of Chimarrogale himalayica. We also conducted a species delimitation analysis and tested two alternative migration scenarios in Asia through species distribution modeling and a reconstruction of the ancestral distribution. Here, we present the first proposed hypothesis regarding the Asiatic water shrew phylogeny and reveal ten putative species within the four recognized species. Distinct phylogenetic statuses of Chimarrogale phaeura, Chimarrogale platycephala, and Chimarrogale styani were confirmed. Chimarrogale himalayica was strongly supported as paraphyletic. We suggest that three subspecies of Chimarrogale himalayica should be reconsidered as distinct species. However, these suggestions must be considered with caution because only a single locus of a mtDNA gene was used. Four additional putative species, possibly distributed in central southwestern China and Taiwan, are currently undescribed; therefore, comprehensive morphological analyses are warranted to test their taxonomic statuses. The estimated molecular divergence times indicated that rapid speciation occurred during the early Pliocene, and current distribution patterns may have been affected by global cooling during the Pliocene/Pleistocene boundary. Reconstruction of the ancestral distribution and species distribution modeling for Asiatic water shrews revealed a low-latitude migration route over which ancestral Chimarrogale migrated from Europe via Central Asia to their current distribution. Our results demonstrated that Asiatic water shrews could have evolved throughout the low-latitude migration route from Europe to East and Southeast Asia.

Based on 203 specimens belonging to the Rhinolophus “pusillus group” (Mammalia: Chiroptera: Rhinolophidae), univariate and multivariate morphometric analyses using 19 characters were performed to assess the confused species taxonomy. The results indicated that R. pusillus (including calidus, parcus, and szechuanus) in the continental region and Hainan Island of China and “R. cornutus” in Japan are morphologically divergent species. Rhinolophus cornutus should be further split into R. cornutus (including orii, pumilus, and miyakonis) in the main islands of Japan, the Amami and Okinawa Group of the central Ryukyu Archipelago, and Miyako Group of the southern Ryukyus; and R. perditus and R. imaizumii from the Yaeyama Group in the southern Ryukyus. Rhinolophus monoceros from Taiwan is morphologically more similar to species in Japan than to R. pusillus. In addition to R. pusillus, another form that is morphologically similar to species in Japan was recognized from Langzhong in Sichuan Province; this may represent an undescribed species, and further examination is necessary to determine its taxonomic status. Specimens from Guang’an in Sichuan Province, China, are also different from the others, and are characterized by the smallest skull size. Although further studies are required, these specimens were tentatively identified as R. subbadius.

The complete sequence of the mitochondrial genome of the mandarin vole (Lasiopodomys mandarinus) was completed and annotated in this study. The circular genome is 16,375 bp in length and contains the typical 37 genes that are arranged in the same order as that of the putative ancestor of vertebrate, 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes and 2 non-coding regions. This study will provide genetic resource to clarify the taxonomic position of genus Lasiopodomys.

We report the karyotypes of six species of the order Soricomorpha (Mammalia), based on specimens collected from Emei Shan (Mount Emei) in central Sichuan Province, China: two talpid species, Uropsilus andersoni (diploid chromosome number [2n]=34, fundamental number of chromosome arms including two X chromosomes [FN]=56) and Scaptonyx fusicaudus (2n=34, FN=64); and four soricid species, Episoriculus sacratus (2n=58, FN=108), Anourosorex squamipes (2n=48, FN=96), Sorex cylindricauda (2n=30, FN=50), and Sorex bedfordiae (2n=24/25, FN=46/48). This is the first report of the karyotypes of all species except Sc. fusicaudus and A. squamipes. Episoriculus sacratus is considered to be a valid species in Sichuan, separated from the Nepalese E. soluensis based on differences in the karyotype. The karyotype of S. bedfordiae showed polymorphism due to the occurrence of a B chromosome. Differences in the karyotypes of S. cylindricauda and S. bedfordiae could be explained mostly by seven Robertsonian translocations revealed by G-band karyotypes.