27 results on '"Kexian Yi"'
Search Results
2. Genetic diversity of 24 asparagus (Asparagus officinalis) accessions as assessed by ISSR markers
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Zheng Jinlong, Shiqing Zhang, Helong Chen, Kexian Yi, Xi Jingen, Zhenzhen Dai, and Jianming Gao
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Genetic diversity ,Horticulture ,biology ,Officinalis ,Asparagus ,biology.organism_classification - Published
- 2020
3. Transcription factor WRKY30 mediates resistance to Cucumber mosaic virus in Arabidopsis
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Da-Wei Zhang, Lijuan Zou, Feng Yang, Qinggui Wu, Yonghong Ma, and Kexian Yi
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0301 basic medicine ,Mutant ,Arabidopsis ,Biophysics ,Biology ,medicine.disease_cause ,Cucumovirus ,Biochemistry ,Cucumber mosaic virus ,03 medical and health sciences ,0302 clinical medicine ,Gene Expression Regulation, Plant ,medicine ,Molecular Biology ,Transcription factor ,Disease Resistance ,Plant Diseases ,Arabidopsis Proteins ,food and beverages ,Cell Biology ,Biotic stress ,Plants, Genetically Modified ,biology.organism_classification ,WRKY protein domain ,Up-Regulation ,Elicitor ,Cell biology ,DNA-Binding Proteins ,030104 developmental biology ,030220 oncology & carcinogenesis ,Host-Pathogen Interactions ,Oxidative stress ,Transcription Factors - Abstract
WRKY transcription factors are key regulators in regulating abiotic or biotic stress response in Arabidopsis. Previous studies showed that WRKY30 expression was induced by oxidative stress treatment, fungal elicitor, SA and ABA. However, functions of WRKY30 on viral defense are not well studied. Here, we found that Arabidopsis WRKY DNA binding protein 30 (WRKY30) plays essential roles in regulating Cucumber mosaic virus (CMV) resistance. The expression of WRKY30 was induced by CMV infection and wrky30 mutant displayed more susceptibility (including higher oxidative damages, induced reactive oxygen species synthesis and more PSII photochemistry compromise), while WRKY30 overexpression plants (WRKY30OX) exhibited more resistance to CMV infection. Moreover BRs-induced CMV tolerance is partly dependent on WRKY30. And WRKY30 expression increased after BL treatment. All these demonstrated that WRKY30 works as a positive regulator in plant CMV resistance process.
- Published
- 2019
4. First Report of Paramyrothecium breviseta Causing Leaf Spot Disease of Coffea canephora in China
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Liang Yanqiong, Li Rui, Jingen Xi, Weihuai Wu, Xuehui Bai, Lu Ying, Shibei Tan, Mengfeng Zhu, Chun Ping He, Xing Huang, and Kexian Yi
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Horticulture ,biology ,Canephora ,Coffea arabica ,Leaf spot ,Potato dextrose agar ,Plant Science ,biology.organism_classification ,Coffea canephora ,Agronomy and Crop Science ,Mycelium ,Conidium ,Spore - Abstract
Coffee is a tropical plant with two widely cultivated species, namely Coffea arabica and Coffea canephora. A leaf spot disease causing brownish and necrotic lesions was broken out on the C. canephora coffee seedlings in a nursery in Ruili County, Yunnan Province, China, during 2018 to 2019. The incidence of the disease was 15% ~ 20%. Ten diseased leaf samples from five diseased plants were collected for pathogen isolation by tissue separation method. Leaf pieces were cut from the margin of the necrotic lesions (4 × 6 mm), surface-sterilized for 30 s in 75% ethanol, followed by 0.1% arsenic mercury solution for 15 s, then washed 3~4 times with sterilized distilled water and transferred onto potato dextrose agar (PDA) medium in petri plates. Four morphologically similar isolates were obtained from lesions and cultivated on PDA at 25°C. Initial colonies of isolates were round, neat edge, white, floccose mycelium and developed dark green-to-black concentric rings that were sporodochia bearing viscid spore masses after 5~7 days. Conidia were acetates, hyaline and cylindrical with both rounded ends and 4.8 to 6.4 µm long × 1.6 to 2.6 µm wide. Koch's test were conducted on three healthy plants leaves of original source variety C. canephora No.2 and C.arabica Catimor CIFC7963 (control plants) with spore suspension (1 × 106/mL), respectively. Meanwhile, equal numbers of healthy plants were inoculated with water as controls. After inoculation, the plants were transferred into an incubator at 25℃ with saturated humidity. After 10 days of inoculation, all the tested plants presented similar typical symptoms with the diseased leaves under natural conditions; whereas the controls remained healthy. Koch's postulates were performed by re-isolating the fungus from the inoculated leaves and verifying its colony and morphological characters. Two single spore isolates cultured on PDA medium were selected for DNA extraction. The ribosomal internal transcribed spacer (ITS) was PCR amplified by using primers ITS1 and ITS4 (White et al., 1990), β-tubulin gene by Bt2a and Bt2b (Glass and Donaldson, 1995), the RNA polymerase II second largest subunit (rpb2) by RPB2-5F2 and RPB2-7cR (O'Donnell et al, 2007), calmodulin (cmda) gene by CAL-228F and CAL2Rd (Groenewald et al., 2013). The sequences of ITS (MT853067 ~ MT853068), β-tubulin (MT897899 ~ MT897900), rpb2 (MW256264~ MW286265) and cmda (MT897897~ MT897898) were deposited in GenBank databases. BLAST analysis revealed that the representative isolates sequences shared 99.31%~99.65% similarities to the ITS sequence of Paramyrothecium breviseta (Accession Nos. NR_155670.1), 99.43% similarities to the β-tubulin sequence of P. breviseta (Accession Nos. KU846406.1), 98.98% similarities to the rpb2 sequence of P. breviseta (Accession Nos. KU846351.1), and 98.54%~98.71% similarities to the cmda sequence of P. breviseta (Accession Nos. KU846262.1). As it shown in the phylogenetic tree derived from combined ITS, β-tubulin, rpb2, and cmda gene sequences, the two representative isolates were clustered together with P. breviseta CBS 544.75 with 98% strong bootstrap support, which confirmed that P. breviseta is the causal agent of leaf spot of Coffea canephora. To our knowledge, this is the first report of a leaf spot disease caused by P. breviseta on C. canephora in China, which raised the caution that P. breviseta is also pathogenic to Coffea Arabica.
- Published
- 2021
5. The complete chloroplast genome of Agave angustifolia
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Xing Huang, Kexian Yi, Xinli Yang, Chen Tao, Wu Mi, Qin Xu, Xiangyan Yang, and Gan Jin
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Chloroplast ,biology ,Phylogenetic tree ,Botany ,Genetics ,Agave ,biology.organism_classification ,Molecular Biology ,Genome - Abstract
Agave angustifolia is commonly used for the production of bacanora, a kind of fermented and distilled beverage in Mexico. In the present study, we have successfully assembled its chloroplast genome...
- Published
- 2021
6. The complete chloroplast genome of Agave fourcroydes
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Xing Huang, Xinli Yang, Peng Xinyi, Xianya Huang, Kexian Yi, Chen Tao, Qin Xu, and Liu Ming
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Yucatan peninsula ,biology ,Phylogenetic tree ,Agave ,biology.organism_classification ,Agave fourcroydes ,Genome ,Chloroplast ,Botany ,Genetics ,phylogenetic tree ,chloroplast genome ,Molecular Biology ,Mitogenome Announcement ,Research Article - Abstract
Agave fourcroydes (henequen) is the only cultivated Agave species in the Yucatan Peninsula, which is mainly used for fiber production. In the present study, we have successfully assembled the chloroplast (cp) genome of A. fourcroydes. The full length of the cp genome is 157,291 bp with a GC content at 37.8%. The cp genome is constructed with an inverted repeat region a (IRa) of 26,573 bp, a small single copy region (SSC) of 18,230 bp, an inverted repeat region b (IRb) of 26,573 bp and a large single copy region (LSC) of 85,915 bp. The annotation result reveals 132 genes on the cp genome, including 86 protein-coding genes, 38 tRNAs and 8 rRNAs. Phylogenetic tree reveals that A. fourcroydes is closely related with A. sisalana.
- Published
- 2021
7. The complete chloroplast genome of Agave sisalana
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Kexian Yi, Xing Huang, Helong Chen, Chen Tao, Xinli Yang, Jingen Xi, Shibei Tan, and Qin Xu
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0106 biological sciences ,0301 basic medicine ,Genetics ,Phylogenetic tree ,Inverted repeat ,Single copy ,Biology ,Agave ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Genome ,Chloroplast ,03 medical and health sciences ,030104 developmental biology ,Molecular Biology ,Gene ,GC-content - Abstract
Agave sisalana is one of the Agave cultivars for sisal fiber production around the tropical areas of the world. In the present study, we successfully sequenced and assembled its chloroplast genome. The full size of the genome is 157,268 bp with a GC content at 37.85%. The genome is constructed with a large single copy region (LSC, 85,894 bp), a pair of inverted repeat regions (IR, 26,573 bp) and a small single copy region (SSC, 18,228 bp). Besides, 86 protein-coding genes, 38 tRNAs and 8 rRNAs are annotated on the chloroplast genome. Phylogenetic result reveals that A. sisalana is closely related with A. americana and A. H11648.
- Published
- 2021
8. Specific PCR-based detection of Phomopsis heveicola the cause of leaf blight of Coffee (Coffea arabica L.) in China
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S.B. Tang, Y.Q. Liang, W.H. Wu, X. Huang, Kexian Yi, C.P. He, J.G. Xi, J.L. Zheng, and Y. Lu
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0106 biological sciences ,China ,Diagnostic methods ,Phomopsis ,Coffea ,01 natural sciences ,Applied Microbiology and Biotechnology ,Coffee ,Polymerase Chain Reaction ,03 medical and health sciences ,Data sequences ,010608 biotechnology ,Blight ,Internal transcribed spacer ,DNA, Fungal ,Pathogen ,DNA Primers ,Plant Diseases ,0303 health sciences ,biology ,030306 microbiology ,Coffea arabica ,biology.organism_classification ,Horticulture ,Specific primers ,Nucleic Acid Amplification Techniques - Abstract
Coffee (Coffea arabica L.) is currently grown in many tropical and subtropical areas countries and is a major traded commodity for the developing world. Coffee leaf blight, caused by Phomopsis heveicola, is one of the most important fungal diseases dangerous to coffee crops in China. This study aimed to develop a PCR-based diagnostic method for detecting P. heveicola in planta. Specific primers (CPHF/CPHR) were designed based on sequence data of region of internal transcribed spacer (ITS1 and ITS4) of P. heveicola. The efficiency and specificity of CPHF/CPHR were established by PCR analysis of DNA from P. heveicola strains isolated from China and fungal isolates of other genera. A single amplification product of 318 bp was detected from DNA P. heveicola isolates. No amplification product was observed with any of the other fungal isolates tested. The specific primers designed and employed in PCR detected P. heveicola up to 3 pg from DNA isolated. This is the first report on the development of a species-specific PCR assay for identification and detection of P. heveicola. Thus, the PCR-based assay developed was very specific, rapid and sensitive tool for the detection of pathogen P. heveicola.
- Published
- 2020
9. Transcriptome Comparison Reveals Distinct Selection Patterns in Domesticated and Wild Agave Species, the Important CAM Plants
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Shiqing Zhang, Liang Yanqiong, Xing Huang, Jianming Gao, Zheng Jinlong, Bo Wang, Chunping He, Kexian Yi, Helong Chen, Yajie Zhang, Weihuai Wu, and Jingen Xi
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0301 basic medicine ,Abiotic component ,Agave tequilana ,lcsh:QH426-470 ,Article Subject ,biology ,Pharmaceutical Science ,Agave ,biology.organism_classification ,Biochemistry ,Genome ,food.food ,Transcriptome ,lcsh:Genetics ,03 medical and health sciences ,030104 developmental biology ,food ,Fructan ,Botany ,Genetics ,Crassulacean acid metabolism ,Domestication ,Molecular Biology ,Research Article - Abstract
Agave species are an important family of crassulacean acid metabolism (CAM) plants with remarkable tolerance to heat and drought stresses (Agave deserti) in arid regions and multiple agricultural applications, such as spirit (Agave tequilana) and fiber (Agave sisalana) production. The agave genomes are commonly too large to sequence, which has significantly restricted our understanding to the molecular basis of stress tolerance and economic traits in agaves. In this study, we collected three transcriptome databases for comparison to reveal the phylogenic relationships and evolution patterns of the three agave species. The results indicated the close but distinctly domesticated relations between A. tequilana and A. sisalana. Natural abiotic and biotic selections are very important factors that have contributed to distinct economic traits in agave domestication together with artificial selection. Besides, a series of candidate unigenes regulating fructan, fiber, and stress response-related traits were identified in A. tequilana, A. sisalana, and A. deserti, respectively. This study represents the first transcriptome comparison within domesticated and wild agaves, which would serve as a guidance for further studies on agave evolution, environmental adaptation, and improvement of economically important traits.
- Published
- 2018
10. First Report of Hemileia vastatrix (Coffee Leaf Rust) Physiological Races Emergent in Coffee Germplasm Collections in the Coffee-Cropping Regions of China
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Qianfeng Xia, Weihuai Wu, Vítor Várzea, Chun Ping He, Wei Xiang, Mengfeng Zhu, Kexian Yi, A. P. Pereira, Le Li, Maria do Céu Machado Lavado da Silva, and TianLe Tang
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Hemileia vastatrix ,Germplasm ,biology ,Obligate ,fungi ,food and beverages ,Plant Science ,biology.organism_classification ,Rust ,Agronomy ,Disease management (agriculture) ,Subject areas ,Agronomy and Crop Science ,Cropping - Abstract
Coffee leaf rust (CLR), caused by the obligate biotrophic fungus Hemileia vastatrix (Hv), is a devastating disease worldwide leading to severe reductions in yield and economic losses in coffee plan...
- Published
- 2021
11. The complete chloroplast genome of agave hybrid 11648
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Qin Xu, Jingen Xi, Xing Huang, Gang Jin, Kexian Yi, and Chen Tao
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0106 biological sciences ,0301 basic medicine ,Phylogenetic tree ,Agave H11648 ,Biology ,Agave ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Genome ,Chloroplast ,03 medical and health sciences ,030104 developmental biology ,Botany ,Genetics ,phylogenetic tree ,chloroplast genome ,Molecular Biology ,Mitogenome Announcement ,Sisal fiber ,Research Article - Abstract
Agave hybrid 11648 is the most widely cultivated agave variety for sisal fiber production around the world. In the present study, we have successfully sequenced the chloroplast genome of A. H11648. The complete chloroplast genome size is 157,274 bp in length with a GC content of 37.8%. The genome contains a large single copy region (LSC) of 85,896 bp, a small single copy region (SSC) of 18,230 bp, and a pair of inverted repeat regions (IR) of 26,574 bp. 121 genes are annotated in the chloroplast genome. The numbers of protein-coding, tRNA and rRNA genes are 99, 40 and 8, respectively. Phylogenetic tree reveals that A. H11648 is closely related to A. americana.
- Published
- 2020
12. Brassinosteroids are involved in ethylene-induced Pst DC3000 resistance in Nicotiana benthamiana
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Kexian Yi, Jiawei Xiong, Lijuan Zou, Ruiyuan He, Hong-Hui Lin, Da-Wei Zhang, and Feng Yang
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0106 biological sciences ,Nicotiana benthamiana ,Plant Immunity ,Pseudomonas syringae ,Plant Science ,Biology ,010603 evolutionary biology ,01 natural sciences ,chemistry.chemical_compound ,Gene Expression Regulation, Plant ,Brassinosteroids ,Tobacco ,Plant defense against herbivory ,Gene silencing ,Brassinosteroid ,Ecology, Evolution, Behavior and Systematics ,Disease Resistance ,Plant Proteins ,chemistry.chemical_classification ,Reactive oxygen species ,fungi ,Callose ,food and beverages ,General Medicine ,Biotic stress ,Ethylenes ,biology.organism_classification ,Cell biology ,chemistry ,010606 plant biology & botany - Abstract
Plant immunity is regulated by a huge phytohormone regulation network. Ethylene(ET) and brassinosteroids (BRs) play critical roles in plant response to biotic stress; however, the relationship between BR and ET in plant immunity is unclear. We used chemical treatments, genetic approaches and inoculation experiments to investigate the relationship between ET and BR in plant defense against Pst DC3000 in Nicotiana benthamiana. Foliar applications of ET and BR enhanced plant resistance to Pst DC3000 inoculation, while treatment with brassinazole (BRZ, a specific BR biosynthesis inhibitor) eliminated the ET induced plant resistance to Pst DC3000. Silencing of DWARF 4(DWF4, a key BR biosynthetic gene), BRASSINOSTEROID INSENSITIVE 1 (BRI1, aBR receptor) and BRASSINOSTEROID-SIGNALING KINASE 1 (BSK1, downstream of BRI1) also neutralised the ET-induced plant resistance to Pst DC3000. ET can induce callose deposition and reactive oxygen species (ROS) accumulation to resistPst DC3000, BRZ-treated and gene-silenced were completely eliminate this response. Our results suggest BR is involved in ET-induced plant resistance, the involvement of ET in plant resistance is possibly by the induction of callose deposition and ROS accumulation, in a BR-dependent manner.
- Published
- 2019
13. Evaluation of genetic diversity within asparagus germplasm based on morphological traits and ISSR markers
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Anping Guo, Jian Wang, Jianming Gao, Zheng Jinlong, Xing Huang, Helong Chen, Shiqing Zhang, Jingen Xi, and Kexian Yi
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0106 biological sciences ,0301 basic medicine ,Germplasm ,Genetic diversity ,Perennial plant ,Physiology ,Dendrogram ,food and beverages ,Genetic relationship ,Plant Science ,Biology ,biology.organism_classification ,01 natural sciences ,03 medical and health sciences ,Horticulture ,030104 developmental biology ,Genetic similarity ,Mantel test ,Asparagus ,Molecular Biology ,010606 plant biology & botany ,Research Article - Abstract
Asparagus officinalis L. is a dioecious perennial plant globally known for its fine flavor and high nutritional value. An evaluation of genetic diversity in 46 asparagus accessions was carried out based on morphological and inter-simple sequence repeat (ISSR) markers. The result show that the coefficient of variation for 20 morphological characteristics is between 12.45 and 62.22%. Factor analysis revealed that nine factors explained 83.37% of the total variance. At Euclidean distance of 135.7, 46 accessions were divided into two clusters. Genetic similarity coefficient (GSC) based on ISSR data ranged from 0.60 to 0.97, suggesting a relatively abundant genetic base. Furthermore, the 46 asparagus accessions could also be grouped into three major clusters at a GSC of 0.74. And there is no significant relation between the two marker systems using the Mantel test. Clustering based on morphological traits compared with that based on ISSR data was not consistent, however, some common groupings were observed between two dendrograms. Therefore the results elucidated asparagus germplasm genetic background and determined hybrid parents, which will facilitate optimal application of asparagus germplasm resources and provide additional data for genetic improvement.
- Published
- 2019
14. Identification and Expression of SAUR Genes in the CAM Plant Agave
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Xing Huang, Thomas Gbokie, Gang Deng, Yaning Bao, Kexian Yi, Shibei Tan, Li Xie, and Zhouli Xie
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0106 biological sciences ,0301 basic medicine ,abiotic stress ,lcsh:QH426-470 ,SAUR ,Genes, Plant ,phylogeny ,01 natural sciences ,Article ,Transcriptome ,03 medical and health sciences ,biotic stress ,Agave ,Phylogenetics ,Auxin ,Stress, Physiological ,Botany ,Genetics ,Computer Simulation ,Gene ,Genetics (clinical) ,Plant Proteins ,chemistry.chemical_classification ,biology ,Indoleacetic Acids ,Abiotic stress ,Gene Expression Profiling ,fungi ,food and beverages ,Biotic stress ,biology.organism_classification ,lcsh:Genetics ,030104 developmental biology ,chemistry ,gene expression ,Crassulacean acid metabolism ,010606 plant biology & botany - Abstract
Agave species are important crassulacean acid metabolism (CAM) plants and widely cultivated in tropical areas for producing tequila spirit and fiber. The hybrid H11648 of Agave ((A. amaniensis ×, A. angustifolia) ×, A. amaniensis) is the main cultivar for fiber production in Brazil, China, and African countries. Small Auxin Up-regulated RNA (SAUR) genes have broad effect on auxin signaling-regulated plant growth and development, while only few SAUR genes have been reported in Agave species. In this study, we identified 43, 60, 24, and 21 SAUR genes with full-length coding regions in A. deserti, A. tequilana, A. H11648, and A. americana, respectively. Although phylogenetic analysis revealed that rice contained a species-specific expansion pattern of SAUR gene, no similar phenomena were observed in Agave species. The in silico expression indicated that SAUR genes had a distinct expression pattern in A. H11648 compared with other Agave species, and four SAUR genes were differentially expressed during CAM diel cycle in A. americana. Additionally, an expression analysis was conducted to estimate SAUR gene expression during different leaf developmental stages, abiotic and biotic stresses in A. H11648. Together, we first characterized the SAUR genes of Agave based on previously published transcriptome datasets and emphasized the potential functions of SAUR genes in Agave&rsquo, s leaf development and stress responses. The identification of which further expands our understanding on auxin signaling-regulated plant growth and development in Agave species.
- Published
- 2019
- Full Text
- View/download PDF
15. Transcriptome Dataset of Leaf Tissue in Agave H11648
- Author
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Xing Huang, Jingen Xi, Li Xie, Thomas Gbokie, and Kexian Yi
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Information Systems and Management ,biology ,leaf ,Alternative splicing ,Sequence assembly ,Computational biology ,Agave ,biology.organism_classification ,lcsh:Z ,Computer Science Applications ,lcsh:Bibliography. Library science. Information resources ,Transcriptome ,chemistry.chemical_compound ,chemistry ,Agave H11648 ,Molecular marker ,Expression quantitative trait loci ,Pressure analysis ,Gene ,transcriptome ,Information Systems - Abstract
Sisal is widely cultivated in tropical areas for fiber production. The main sisal cultivar, Agave H11648 ((A. amaniensis × A. angustifolia) × A. amaniensis) has a relatively scarce molecular basis and no genomic information. Next-generation sequencing technology has offered a great opportunity for functional gene mining in Agave species. Several published Agave transcriptomes have already been reused for gene cloning and selection pressure analysis. There are also other potential uses of the published transcriptomes, such as meta-analysis, molecular marker detection, alternative splicing analysis, multi-omics analysis, genome assembly, weighted gene co-expression network analysis, expression quantitative trait loci analysis, miRNA target site prediction, etc. In order to make the best of our published transcriptome of A. H11648 leaf, we here represent a data descriptor, with the aim to expand Agave bio information and benefit Agave genetic researches.
- Published
- 2019
16. De Novo Transcriptome Assembly of Agave H11648 by Illumina Sequencing and Identification of Cellulose Synthase Genes in Agave Species
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Shiqing Zhang, Helong Chen, Mei Xiao, Jingen Xi, Weihuai Wu, Liang Yanqiong, Jianming Gao, Li Xie, Xing Huang, Kexian Yi, Chunping He, and Zheng Jinlong
- Subjects
0106 biological sciences ,0301 basic medicine ,lcsh:QH426-470 ,gene clone ,De novo transcriptome assembly ,Asparagus ,Sequence assembly ,RNA-Seq ,cellulose synthase ,phylogeny ,01 natural sciences ,Genome ,03 medical and health sciences ,Botany ,Genetics ,Gene family ,Genetics (clinical) ,Illumina dye sequencing ,Agave ,biology ,biology.organism_classification ,lcsh:Genetics ,030104 developmental biology ,crassulacean acid metabolism ,gene expression ,RNA-seq ,010606 plant biology & botany - Abstract
Agave plants are important crassulacean acid metabolism (CAM) plants with multiple agricultural uses, such as being used in tequila and fiber production. Agave hybrid H11648 ((A. amaniensis Trel. and Nowell ×, A. angustifolia Haw.) ×, A. amaniensis) is the main cultivated Agave species for fiber production in large tropical areas around the world. In this study, we conducted a transcriptome analysis of A. H11648. About 49.25 million clean reads were obtained by Illumina paired-end sequencing. De novo assembly produced 148,046 unigenes with more than 40% annotated in public databases, or matched homologs in model plants. More homologous gene pairs were found in Asparagus genome than in Arabidopsis or rice, which indicated a close evolutionary relationship between Asparagus and A. H11648. CAM-related gene families were also characterized as previously reported in A. americana. We further identified 12 cellulose synthase genes (CesA) in Asparagus genome and 38 CesA sequences from A. H11648, A. americana, A. deserti and A. tequilana. The full-length CesA genes were used as references for the cloning and assembly of their homologs in other Agave species. As a result, we obtained CesA1/3/4/5/7 genes with full-length coding region in the four Agave species. Phylogenetic and expression analysis revealed a conserved evolutionary pattern, which could not explain the distinct fiber traits in different Agave species. We inferred that transcriptional regulation might be responsible for Agave fiber development. This study represents the transcriptome of A. H11648, which would expand the number of Agave genes and benefit relevant studies of Agave fiber development.
- Published
- 2019
- Full Text
- View/download PDF
17. Rapid and quantitative detection of citrus huanglongbing bacterium ‘Candidatus Liberibacter asiaticus’ by real-time fluorescent loop-mediated isothermal amplification assay in China
- Author
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Guihua Wang, Meng Chunliang, Zhang Xin, Jun Peng, Liu Yuanzheng, Xuhui Wu, and Kexian Yi
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0106 biological sciences ,0301 basic medicine ,biology ,Candidatus Liberibacter asiaticus ,030106 microbiology ,Loop-mediated isothermal amplification ,Plant Science ,Diagnostic tools ,biology.organism_classification ,01 natural sciences ,Fluorescence ,Virology ,03 medical and health sciences ,chemistry.chemical_compound ,chemistry ,Genetics ,SYBR Green I ,Candidatus ,Bacteria ,010606 plant biology & botany - Abstract
Huanglongbing (HLB) is a devastating citrus disease that is associated with bacteria of the species ‘Candidatus Liberibacter asiaticus (Las)’ in China. All currently popular cultivars are susceptible to HLB, and there are no effective approaches to control the disease once the plants have been infected. Therefore, rapid and easy diagnostic tools are needed for maintaining clean nursery stock and inoculum removal strategies to control HLB. A real-time fluorescence loop-mediated isothermal amplification (RealAmp) targeting16S rDNA was developed for the rapid and quantitative detection of Las in China. The detection sensitivity of the RealAmp assay was approximately 1 pg/μl template DNA (equal to 2.4 × 105 target DNA copies/μl) and no cross-reaction was observed with other pathogens or virus-free seedlings. Besides the quantitative detection using SYTO-9 fluorescent dye, an improved closed-tube visual inspection technique using SYBR Green I staining was developed for rapid screening of samples and minimize the risk of cross-contamination. The RealAmp assay is an alternative quantitative method, which would be used as a routine detection service for nursery materials in China.
- Published
- 2016
18. Genome-Wide Analysis of the PIN Auxin Efflux Carrier Gene Family in Coffee
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Margit Laimer, Tieying Guo, Dengxiang Du, Xuehui Bai, Zhouli Xie, Lu Ying, Thomas Gbokie, Xing Huang, Chunping He, Zhirun Zhang, Weihuai Wu, and Kexian Yi
- Subjects
Coffea arabica ,0106 biological sciences ,0301 basic medicine ,Auxin efflux ,auxin efflux carrier ,Canephora ,Plant Science ,Biology ,phylogeny ,Coffea canephora ,01 natural sciences ,Article ,03 medical and health sciences ,Auxin ,lcsh:Botany ,expression ,Gene duplication ,Gene family ,Gene ,Ecology, Evolution, Behavior and Systematics ,chemistry.chemical_classification ,Genetics ,Ecology ,PIN ,Coffea eugenioides ,biology.organism_classification ,lcsh:QK1-989 ,030104 developmental biology ,chemistry ,010606 plant biology & botany - Abstract
Coffee is one of the most popular beverages around the world, which is mainly produced from the allopolyploid Coffea arabica. The genomes of C. arabica and its two ancestors C. canephora and C. eugenioides have been released due to the development of next generation sequencing. However, few studies on C. arabica are related to the PIN-FORMED (PIN) auxin efflux transporter despite its importance in auxin-mediated plant growth and development. In the present study, we conducted a genome-wide analysis of the PIN gene family in the three coffee species. Totals of 17, 9 and 10 of the PIN members were characterized in C. Arabica, C. canephora and C. eugenioides, respectively. Phylogenetic analysis revealed gene loss of PIN1 and PIN2 homologs in C. arabica, as well as gene duplication of PIN5 homologs during the fractionation process after tetraploidy. Furthermore, we conducted expression analysis of PIN genes in C. arabica by in silico and qRT-PCR. The results revealed the existence of gene expression dominance in allopolyploid coffee and illustrated several PIN candidates in regulating auxin transport and homeostasis under leaf rust fungus inoculation and the tissue-specific expression pattern of C. arabica. Together, this study provides the basis and guideline for future functional characterization of the PIN gene family.
- Published
- 2020
19. Induction of new tetraploid genotypes and heat tolerance assessment in Asparagus officinalis L
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Xing Huang, Jian Wang, Zheng Jinlong, Jingen Xi, Anping Guo, Chen Tao, Shiqing Zhang, Jianming Gao, Helong Chen, Lu Zhiwei, and Kexian Yi
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0106 biological sciences ,0301 basic medicine ,fungi ,food and beverages ,pathological conditions, signs and symptoms ,Horticulture ,Biology ,biology.organism_classification ,01 natural sciences ,Chloroplast ,03 medical and health sciences ,030104 developmental biology ,Point of delivery ,Germination ,Officinalis ,Asparagus ,Proline ,Gene pool ,Ploidy ,010606 plant biology & botany - Abstract
Tetraploid induction is an effective way to generate new genotypes. In this study, tetraploid inductions of asparagus (Asparagus officinalis L.) were obtained by applying several treatments with colchicine. Optimal results (31 %) were obtained by applying 0.15 % colchicine plus 2 % dimethyl sulphoxide (DMSO) to recently germinated seeds (5 days old) for 16 h. Sixty-five tetraploid plants were recovered from this treatment and diploid and tetraploid plants showed significant differences in morphology. The stomatal density of tetraploid asparagus was approximately half than that of diploid plants, whereas the chloroplast number of tetraploid plants was twice that of diploid plants; moreover, the stomatal length and breadth were slightly larger in tetraploid plants than in diploid plants. Furthermore, in tetraploid genotypes the chlorophyl A content was double than that of diploid plants, whereas chlorophyl B and total chlorophyl contents were three times higher than in diploid plants. The tetraploid plants showed better growth, more flowering flourish, deeper color, and bulkier leaves in comparison to the diploid plants. Moreover, tetraploid plants had lower malonaldehyde (MDA) and higher activity of superoxide dismutase (SOD), peroxidase (POD) and free proline (Pro), the differences were all significant, indicating that tetraploid plants had increased heat resistance however there was no significant difference in the heat tolerance between plants of the same ploidy. Tetraploid plants with strong heat resistance broaden the asparagus gene pool and could aid future breeding work in asparagus.
- Published
- 2020
20. First Report of Phomopsis heveicola (Anamorph of Diaporthe tulliensis) Causing Leaf Blight of Coffee (Coffea arabica) in China
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Liang Yanqiong, Xing Huang, Weihuai Wu, Lu Ying, S. B. Tang, Kexian Yi, Zheng Jinlong, Jingen Xi, Chunping He, and J. L. Gong
- Subjects
Pathogen detection ,Phomopsis ,biology ,Coffea arabica ,Botany ,Blight ,Tropical plants ,Plant Science ,Fungal morphology ,biology.organism_classification ,Pathogenicity ,Agronomy and Crop Science ,Diaporthe tulliensis - Published
- 2020
21. Biotransformation of steroidal saponins in sisal (Agave sisalanaPerrine) to tigogenin by a newly isolated strain from a karst area of Guilin, China
- Author
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Li Xia, Sun Hao, Wang Yanchao, Jinlong Zheng, Zaibin Hao, Jie Zhang, and Kexian Yi
- Subjects
biology ,Strain (chemistry) ,Chemistry ,Agave ,biology.organism_classification ,Substrate concentration ,Bacterial strain ,Biotransformation ,Botany ,Acid hydrolysis ,Food science ,computer ,SISAL ,Biotechnology ,computer.programming_language - Abstract
A rod-shaped bacterium was isolated from the soil in a karst area of Guilin, China and its biotransformation of steroidal saponins in sisal (Agave sisalana Perrine) to tigogenin was presented for the first time. A total of 22 strains for the degradation of steroidal saponins in sisal were isolated from 48 soil samples, and the isolated rod-shaped, bacterial strain ZG-21 was used for the production of tigogenin due to its highest degradation efficiency of steroidal saponins in sisal. The parameters affecting biotransformation by strain ZG-21 were optimized. Under the optimized conditions of temperature (30 °C), pH (6), time (5 days) and substrate concentration (5 mg/mL), a maximum tigogenin yield of 26.7 mg/g was achieved. Compared with the conventional method of acid hydrolysis, the biotransformation method provided a clean and eco-friendly alternative for the production of tigogenin.
- Published
- 2014
22. Expression of a hevein-like gene in transgenic Agave hybrid No. 11648 enhances tolerance against zebra stripe disease
- Author
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Liu Qiaolian, Xi Jingen, Shiqing Zhang, Zheng Jinlong, Jinzhi Li, Kexian Yi, Jianming Gao, Feng Yang, and Helong Chen
- Subjects
Acetosyringone ,biology ,Agrobacterium ,Transgene ,fungi ,food and beverages ,Horticulture ,Phytophthora nicotianae ,Agave ,biology.organism_classification ,chemistry.chemical_compound ,Tissue culture ,chemistry ,Callus ,Botany ,Transformation efficiency - Abstract
Zebra disease, which is caused by Phytophthora nicotianae, is a serious global threat to the main cultivar Agave hybrid No. 11648 (H.11648). This disease requires a long period to obtain anti-P. nicotianae variants by crossbreeding, given that 10 years are needed for this plant to bloom. Therefore, transgenic technology could be useful for the production of new agave lines that might develop significant tolerance to P. nicotianae within a relatively short period. In this study, a tissue culture system was tested on H.11648. Results showed that the optimum culture medium for callus induction was SH + 3 mg L−1 6-BA + 0.5 mg L−1 NAA + 0.1 mg L−1 2,4-D + 30 g L−1 sucrose + 6.5 g L−1 carrageenan, with pH of 5.8. The induction medium for budding was SH + 1.5 mg L−1 6-BA + 0.5 mg L−1 NAA + 30 g L−1 sucrose + 6.5 g L−1 carrageenan at pH 5.8. The induction medium for rooting was SH + 0.1 mg L−1 IAA + 30 g L−1 sucrose + 6.5 g L−1 carrageenan. The primary factors influencing plant transformation efficiency were also investigated. Results showed that the effective time for infection was 10 min, the optimum concentration of acetosyringone was 200 μM, the optimum time for pre-culture of sisal callus was 3 days, and the optimum co-culture time for calli and Agrobacterium was 4 days. Sisal calli will die when phosphinothricin concentration reaches 2.0 mg L−1. Furthermore, a hevein-like protein gene from Pharbitis nil was introduced to H.11648. The integration stability and expression level of the transgene in the H.11648 genome were analyzed by using Southern blot and reverse transcription polymerase chain reaction. The mycelial growth rate of P. nicotianae was significantly inhibited by the crude leaf extracts from the transgenic H.11648 plants. After further study in vivo, the resistance of transgenic H.11648 plants to P. nicotianae infection was enhanced.
- Published
- 2014
23. Agrobacterium tumefaciens-mediated transformation of a hevein-like gene into asparagus leads to stem wilt resistance
- Author
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Zheng Jinlong, Shiqing Zhang, Helong Chen, Jian Wang, Lu Zhiwei, Jingen Xi, Kexian Yi, Anping Guo, Shibei Tan, Xing Huang, and Jianming Gao
- Subjects
0106 biological sciences ,0301 basic medicine ,Embryology ,Acetosyringone ,Agrobacteria ,Artificial Gene Amplification and Extension ,Plant Science ,Genetically modified crops ,Genetically Modified Plants ,Polymerase Chain Reaction ,01 natural sciences ,chemistry.chemical_compound ,Plant Microbiology ,Asparagus ,Transgenes ,Disease Resistance ,Multidisciplinary ,biology ,Genetically Modified Organisms ,Gene Transfer Techniques ,Eukaryota ,food and beverages ,Agrobacterium tumefaciens ,Plants ,Horticulture ,Engineering and Technology ,Medicine ,Plant Lectins ,Genetic Engineering ,Asparagus Plant ,Research Article ,Biotechnology ,Agrobacterium ,Science ,Transgene ,Bioengineering ,DNA construction ,Plant disease resistance ,Research and Analysis Methods ,Agrobacterium Tumefaciens ,Microbiology ,03 medical and health sciences ,Transformation, Genetic ,010608 biotechnology ,Molecular Biology Techniques ,Molecular Biology ,Bacteria ,030102 biochemistry & molecular biology ,Embryos ,Organisms ,Fungi ,Biology and Life Sciences ,Plant Pathology ,biology.organism_classification ,Transformation (genetics) ,chemistry ,Seedlings ,Plasmid Construction ,Plant Biotechnology ,Developmental Biology ,Antimicrobial Cationic Peptides - Abstract
Asparagus stem wilt, is a significant and devastating disease, typically leading to extensive economic losses in the asparagus industry. To obtain transgenic plants resistant to stem wilt, the hevein-like gene, providing broad spectrum bacterial resistance was inserted into the asparagus genome through Agrobacterium tumefaciens-mediated transformation. The optimal genetic transformation system for asparagus was as follows: pre-culture of embryos for 2 days, inoculation using a bacterial titre of OD600 = 0.6, infection time 10 min and co-culturing for 4 days using an Acetosyringone concentration of 200 μmol/L. Highest transformation frequencies reached 21% and ten transgenic asparagus seedlings carrying the hevein-like gene were identified by polymerase chain reaction. Moreover, integration of the hevein-like gene in the T1 generation of transgenic plants was confirmed by southern blot hybridization. Analysis showed that resistance to stem wilt was enhanced significantly in the transgenic plants, in comparison to non- transgenic plants. The results provide additional data for genetic improvement and are of importance for the development of new disease-resistant asparagus varieties.
- Published
- 2019
24. The asparagus genome sheds light on the origin and evolution of a young Y chromosome
- Author
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Zhen Yue, Chunyan Xu, Mayumi Nakano, Atul Kakrana, John Groenendijk, Ron van der Hulst, Shaochun Luo, Akira Kanno, Saravanaraj Ayyampalayam, Jinsong Zhou, Wenqi Li, Chen Guangyu, Paolo Riccardi, Dave Kudrna, Jeremy N. Ray, Haixin Chen, J. Chris Pires, Helong Chen, Agostino Falavigna, Meizhong Luo, Pierre Lavrijsen, Hongzhi Kong, Jianming Gao, Francesco Mercati, Rod A. Wing, Hongyan Shan, Alex Harkess, Kexian Yi, Blake C. Meyers, Zhang Yueping, Michael R. McKain, Haibao Tang, Siwaret Arikit, Xiangyang Xu, John E. Bowers, Jim Leebens-Mack, Francesco Sunseri, Zichao Mao, Alexa Telgmann-Rauber, Yanling Chen, Sandra M. Mathioni, and Yin Ye
- Subjects
0301 basic medicine ,Plant Infertility ,Science ,Arabidopsis ,General Physics and Astronomy ,Biology ,phylogeny ,Y chromosome ,Genome ,General Biochemistry, Genetics and Molecular Biology ,Chromosomes, Plant ,Evolution, Molecular ,03 medical and health sciences ,hermaphrodite ,Genetic linkage ,eukaryote ,evolution ,Asparagus ,Hermaphroditic Organisms ,chromosome ,lcsh:Science ,genome ,Gene ,Genetics ,Multidisciplinary ,Autosome ,Sex Chromosomes ,Chromosome ,General Chemistry ,Sex Determination Processes ,biology.organism_classification ,recombination ,030104 developmental biology ,lcsh:Q ,Asparagus Plant ,Sex linkage ,Genome, Plant - Abstract
Sex chromosomes evolved from autosomes many times across the eukaryote phylogeny. Several models have been proposed to explain this transition, some involving male and female sterility mutations linked in a region of suppressed recombination between X and Y (or Z/W, U/V) chromosomes. Comparative and experimental analysis of a reference genome assembly for a double haploid YY male garden asparagus (Asparagus officinalis L.) individual implicates separate but linked genes as responsible for sex determination. Dioecy has evolved recently within Asparagus and sex chromosomes are cytogenetically identical with the Y, harboring a megabase segment that is missing from the X. We show that deletion of this entire region results in a male-to-female conversion, whereas loss of a single suppressor of female development drives male-to-hermaphrodite conversion. A single copy anther-specific gene with a male sterile Arabidopsis knockout phenotype is also in the Y-specific region, supporting a two-gene model for sex chromosome evolution.
- Published
- 2016
25. Cloning of insertion site flanking sequence and construction of transfer DNA insert mutant library in Stylosanthes colletotrichum
- Author
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Guixiu Huang, Shiqing Zhang, Kexian Yi, Jingen Xi, Caiping Hu, Helong Chen, Zheng Jinlong, Liu Qiaolian, and Jianming Gao
- Subjects
Transfer DNA ,Agrobacterium ,Mutant ,Genetic Vectors ,lcsh:Medicine ,Plant Science ,Microbiology ,Transformation, Genetic ,Plant Microbiology ,Spore germination ,Colletotrichum ,Aspartate Aminotransferases ,Cloning, Molecular ,lcsh:Science ,Promoter Regions, Genetic ,Genetics ,Genomic Library ,Multidisciplinary ,biology ,lcsh:R ,fungi ,Microbial Mutation ,Biology and Life Sciences ,Fabaceae ,Agrobacterium tumefaciens ,Spores, Fungal ,Plant Pathology ,biology.organism_classification ,Coculture Techniques ,Transformation (genetics) ,Mutagenesis, Insertional ,DNA Transposable Elements ,lcsh:Q ,Genome, Fungal ,Transformation efficiency ,Research Article - Abstract
Stylosanthes sp. is the most important forage legume in tropical areas worldwide. Stylosanthes anthracnose, which is mainly caused by Colletotrichum gloeosporioides, is a globally severe disease in stylo production. Little progress has been made in anthracnose molecular pathogenesis research. In this study, Agrobacterium tumefaciens-mediated transformation was used to transform Stylosanthes colletotrichum strain CH008. The major factors of the genetic transformation system of S. colletotrichum were optimized as follows: A. tumefaciens' AGL-1 concentration (OD(600)), 0.8; concentration of Colletotrichum conidium, 1 × 10(6) conidia/mL; acetosyringone concentration, 100 mmol/L; induction time, 6 h; co-culture temperature, 25 °C; and co-culture time, 3 d. Thus, the transformation efficiency was increased to 300-400 transformants per 106 conidia. Based on the optimized system, a mutant library containing 4616 mutants was constructed, from which some mutants were randomly selected for analysis. Results show that the mutants were single copies that could be stably inherited. The growth rate, spore amount, spore germination rate, and appressorium formation rate in some mutants were significantly different from those in the wild-type strain. We then selected the most appropriate method for the preliminary screening and re-screening of each mutant's pathogenic defects. We selected 1230 transformants, and obtained 23 strains with pathogenic defects, namely, 18 strains with reduced pathogenicity and five strains with lost pathogenicity. Thermal asymmetric interlaced PCR was used to identify the transfer DNA (T-DNA) integration site in the mutant that was coded 2430, and a sequence of 476 bp was obtained. The flanking sequence of T-DNA was compared with the Colletotrichum genome by BLAST, and a sequence of 401 bp was found in Contig464 of the Colletotrichum genome. By predicting the function of the flanking sequence, we discovered that T-DNA insertion in the promoter region of the putative gene had 79% homology with the aspartate aminotransferase gene in Magnaporthe oryzae (XP_003719674.1).
- Published
- 2014
26. Isolation and characterization of a cryptogein-like gene from drought and salt-treated Alternanthera philoxeroides roots
- Author
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Jinzhi Li, Kexian Yi, Qiang Xiao, Shiqing Zhang, Jianming Gao, Helong Chen, and Caibo Luo
- Subjects
clone (Java method) ,Models, Molecular ,Molecular Sequence Data ,Bioengineering ,Applied Microbiology and Biotechnology ,Plant Roots ,Pichia ,Pichia pastoris ,Fungal Proteins ,Rapid amplification of cDNA ends ,Botany ,Amino Acid Sequence ,Gene ,Plant Proteins ,Fungal protein ,Differential display ,Amaranthaceae ,biology ,fungi ,food and beverages ,General Medicine ,Salt Tolerance ,biology.organism_classification ,Recombinant Proteins ,Droughts ,Alternanthera philoxeroides ,Weed ,Biotechnology - Abstract
Alligator weed, Alternanthera philoxeroides (Mart.) Grisb, is an amphibious plant with long thick fleshy roots that develop from adventitious roots under drought conditions. To clone differentially-expressed genes from the roots of A. philoxeroides we applied both mRNA differential display and rapid amplification of cDNA ends techniques. A cryptogein-like gene of A. philoxeroides, designated as ApCL, was cloned. On the basis of semi-quantitative RT-PCR analysis results, we demonstrated that the ApCL gene was upregulated under drought and salt stress conditions. After ApCL was transferred to Pichia pastoris GS115 and its resistance to drought and salt then increased by >100 %. Therefore, the ApCL gene of A. philoxeroides was likely involved in drought and salt tolerance responses.
- Published
- 2014
27. AFLP analysis and zebra disease resistance identification of 40 sisal genotypes in China
- Author
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Zhenzhen Dai, Shiqing Zhang, Chaoming Guo, Helong Chen, Zheng Jinlong, Kexian Yi, Luoping, Liu Qiaolian, Chenji Jiang, Jianming Gao, and Jinzhi Li
- Subjects
Germplasm ,Phytophthora ,Veterinary medicine ,China ,Genotype ,Biology ,engineering.material ,Plant disease resistance ,Fiber crop ,Botany ,Genetics ,Cluster Analysis ,Cultivar ,Amplified Fragment Length Polymorphism Analysis ,Molecular Biology ,Asparagaceae ,Disease Resistance ,Plant Diseases ,fungi ,food and beverages ,Genetic Variation ,General Medicine ,Phytophthora nicotianae ,Agave ,biology.organism_classification ,Plant Leaves ,Seeds ,engineering ,Amplified fragment length polymorphism - Abstract
Sisal is the most important fiber crop in tropical and subtropical areas in China and the world. Zebra disease is a serious threat to the main cultivar Agave hybrid No.11648 (H.11648) worldwide. To select germplasm materials with zebra disease resistance for breeding, the fluorescent amplified fragment length polymorphism (AFLP) technique was used to make a cluster analysis of the genetic relationships of 40 sisal genotypes grown in China, and Phytophthora nicotianae was used to inoculate the 40 genotypes to identify their resistance to zebra disease. As a result, the similarity coefficient among 40 sisal genotypes was found to be 0.44–0.83 and the 40 genotypes show different levels of disease resistance. According to the AFLP analysis, the disease resistance and chromosomal ploidy, it can be reasoned that, A. attenuata var. marginata, Dong 109, Nan ya 1 and A. attenuata are suitable for hybridization with H.11648 to breed a new disease-resistant variety.
- Published
- 2010
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