Author: "Institut Ecologie et Environnement (INEE)" / Topic: biology.organism_classification - Searchworks@Jio Institute Digital Library Search Results

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1,344 results on '"Institut Ecologie et Environnement (INEE)"'

1. Soil properties, grassland management, and landscape diversity drive the assembly of earthworm communities in temperate grasslands

Author: Lou Barbe, Cécile Monard, Daniel Cluzeau, Kevin Hoeffner, Mathieu Santonja, Mathilde Le Moing, Ecosystèmes, biodiversité, évolution [Rennes] (ECOBIO), Université de Rennes (UR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR), Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Centre National de la Recherche Scientifique (CNRS), Institut méditerranéen de biodiversité et d'écologie marine et continentale (IMBE), Avignon Université (AU)-Aix Marseille Université (AMU)-Institut de recherche pour le développement [IRD] : UMR237-Centre National de la Recherche Scientifique (CNRS), Station Biologique de Paimpont CNRS UMR 6653 (OSUR), Université de Rennes (UR), Ministère de l'Enseignement supérieur, de la Recherche et de l'Innovation, Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES), Centre National de la Recherche Scientifique (CNRS)-Institut de recherche pour le développement [IRD] : UMR237-Aix Marseille Université (AMU)-Avignon Université (AU), and Université de Rennes 1 (UR1)
Subjects: trampling, Soil Science, 010501 environmental sciences, Biology, 01 natural sciences, Grassland, field margin, Abundance (ecology), soil organic matter, hedgerow, 0105 earth and related environmental sciences, 2. Zero hunger, Biomass (ecology), geography, geography.geographical_feature_category, Ecology, Soil organic matter, Earthworm, ecological category, 04 agricultural and veterinary sciences, 15. Life on land, biology.organism_classification, soil PH, Habitat, [SDE]Environmental Sciences, 040103 agronomy & agriculture, 0401 agriculture, forestry, and fisheries, livestock unit, Species richness, [SDE.BE]Environmental Sciences/Biodiversity and Ecology, Epigeal
Abstract: International audience; Earthworms are widespread soil organisms that contribute to a wide range of ecosystem services. As such, it is important to improve our knowledge, still scanty, of the factors that drive the assembly of earthworm communities. The aim of the present study was to conjointly evaluate the effects on the assembly of earthworm communities of i) soil properties (texture, organic matter content, and pH), ii) grassland management (grassland age, livestock unit, and type of fertilization), iii) landscape diversity (richness, diversity of surrounding habitats, and grassland plant diversity), and iv) presence of hedgerows. The study was conducted in temperate grasslands of Brittany, France. Earthworms were sampled in 24 grasslands and, in three of these grasslands, they were sampled near a hedgerow or near a ditch (control without a hedgerow). Soil properties explained the larger portion of the variation in the earthworm community parameters compared to grassland management or landscape diversity. The increase in soil organic matter content and pH were the most favorable factors for earthworm abundance and biomass, in particular for endogeic species. Regarding grassland management, the increase in the livestock unit was the most damaging factor for earthworm communities, in particular for the anecic earthworm biomass and endogeic species richness. Surprisingly, landscape diversity negatively affected the total earthworm abundance and epigeic earthworm biomass, but it was related to an increase in the epi-anecic species. At a finer scale, we also demonstrated that the presence of hedgerows surrounding grasslands enhanced earthworm species richness, especially within the epigeic and anecic ecological categories. This study highlights that the earthworm ecological categories respond specifically to environmental filters; further studies need to be conducted to elucidate the factors that drive the assembly of earthworm communities at this ecological category level. We recommend that policymakers should act on landscape management to favor earthworm diversity in order to improve the ecosystem services they drive.
Published: 2021

2. Ecotoxicological assessment of commercial boron nitride nanotubes toward Xenopus laevis tadpoles and host-associated gut microbiota

Author: Maialen Barret, Florence Mouchet, Laury Gauthier, Clément Baratange, Lauris Evariste, Emmanuel Flahaut, Brigitte Soula, Anne Marie Galibert, Eric Pinelli, Laboratoire Ecologie Fonctionnelle et Environnement (ECOLAB), Université Toulouse III - Paul Sabatier (UT3), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Observatoire Midi-Pyrénées (OMP), Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Centre National de la Recherche Scientifique (CNRS), Centre interuniversitaire de recherche et d'ingenierie des matériaux (CIRIMAT), Centre National de la Recherche Scientifique (CNRS)-Université Toulouse III - Paul Sabatier (UT3), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Institut de Chimie du CNRS (INC), Centre National de la Recherche Scientifique - CNRS (FRANCE), Institut National Polytechnique de Toulouse - Toulouse INP (FRANCE), Université Toulouse III - Paul Sabatier - UT3 (FRANCE), Laboratoire Ecologie Fonctionnelle et Environnement (LEFE), Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université de Toulouse (UT)-Observatoire Midi-Pyrénées (OMP), Institut de Recherche pour le Développement (IRD)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France -Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France -Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT), and Université de Toulouse (UT)-Université de Toulouse (UT)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP)
Subjects: inorganic chemicals, Amphibian, 16S, Matériaux, Xenopus, Biomedical Engineering, Gut microbiota, 02 engineering and technology, 010501 environmental sciences, Gut flora, Nitride, Toxicology, medicine.disease_cause, 01 natural sciences, [SPI.MAT]Engineering Sciences [physics]/Materials, biology.animal, medicine, 0105 earth and related environmental sciences, Larva, biology, Host (biology), Chemistry, 021001 nanoscience & nanotechnology, biology.organism_classification, [SDE.ES]Environmental Sciences/Environmental and Society, Biochemistry, Environnement et Société, Boron nitride nanotubes, Genotoxicity, Ecotoxicity, 0210 nano-technology
Abstract: International audience; Despite the growing interest for boron nitride nanotubes (BNNT) due to their unique properties, data on the evaluation of the environmental risk potential of this emerging engineered nanomaterial are currently lacking. Therefore, the ecotoxicity of a commercial form of BNNT (containing tubes, hexagonal-boron nitride, and boron) was assessed in vivo toward larvae of the amphibian Xenopus laevis. Following the exposure, multiple endpoints were measured in the tadpoles as well as in bacterial communities associated to the host gut. Exposure to BNNT led to boron accumulation in host tissues and was not associated to genotoxic effects. However, the growth of the tadpoles increased due to BNNT exposure. This parameter was associated to remodeling of gut microbiome, benefiting to taxa from the phylum Bacteroidetes. Changes in relative abundance of this phylum were positively correlated to larval growth. The obtained results support the finding that BNNT are biocompatible as indicated by the absence of toxic effect from the tested nanomaterials. In addition, byproducts, especially free boron present in the tested product, were overall beneficial for the metabolism of the tadpoles.
Published: 2020

3. Increased population density depresses activity but does not influence emigration in the snail Pomatias elegans

Author: Maxime Dahirel, Armelle Ansart, Loïc Menut, Ecosystèmes, biodiversité, évolution [Rennes] (ECOBIO), Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES), Institut Sophia Agrobiotech (ISA), Université Nice Sophia Antipolis (... - 2019) (UNS), COMUE Université Côte d'Azur (2015-2019) (COMUE UCA)-COMUE Université Côte d'Azur (2015-2019) (COMUE UCA)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Université Côte d'Azur (UCA), Université de Rennes (UR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR), Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Centre National de la Recherche Scientifique (CNRS), and Université Nice Sophia Antipolis (1965 - 2019) (UNS)
Subjects: defence, 0106 biological sciences, gastropod, Range (biology), Snail, 010603 evolutionary biology, 01 natural sciences, Population density, dispersal syndromes, biology.animal, 0501 psychology and cognitive sciences, 050102 behavioral science & comparative psychology, Evolutionary dynamics, Ecology, Evolution, Behavior and Systematics, biology, Ecology, 05 social sciences, Land snail, 15. Life on land, biology.organism_classification, ecosystem functioning, sex-biased dispersal, Biological dispersal, Dormancy, Animal Science and Zoology, [SDE.BE]Environmental Sciences/Biodiversity and Ecology, Pomatias elegans
Abstract: Dispersal is a key trait linking ecological and evolutionary dynamics, allowing organisms to optimize fitness expectations in spatially and temporally heterogeneous environments. Some organisms can both actively disperse or enter a reduced activity state in response to challenging conditions, and both responses may be under a trade-off. To understand how such organisms respond to changes in environmental conditions, we studied the dispersal and activity behaviour in the gonochoric land snail Pomatias elegans, a litter decomposer that can reach very high local densities, across a wide range of ecologically relevant densities. We found that crowding up to twice the maximal recorded density had no detectable effect on dispersal tendency in this species, contrary to previous results in many hermaphroditic snails. Pomatias elegans is nonetheless able to detect population density; we show they reduce activity rather than increase dispersal in response to crowding. We discuss these results based on the ability of many land snails to enter dormancy for extended periods of time in case of unfavourable conditions. We propose that dormancy ("dispersal in time") may be more advantageous in species with especially poor movement abilities, even by land mollusc standards, like P. elegans. Interestingly, dispersal and activity were correlated independently of density; this dispersal syndrome may reflect a dispersal-dormancy trade-off at the individual level. Additionally, we found snails with heavier shells relative to their size tended to be less mobile, which may reflect physical and metabolic constraints on movement and/or survival during inactivity. We finally discuss how the absence of density-dependent dispersal may explain why P. elegans is often found at very high local densities, and the possible consequences for ecosystem functioning and litter decomposition.
Published: 2020

4. Body-color plasticity of the English grain aphid in response to light in both laboratory and field conditions

Author: Kévin Tougeron, Tim J. Dumonceaux, J. van Baaren, D. Nordin, Jennifer Town, Tyler J. Wist, Ecosystèmes, biodiversité, évolution [Rennes] (ECOBIO), Université de Rennes (UR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR), Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Centre National de la Recherche Scientifique (CNRS), Université Catholique de Louvain = Catholic University of Louvain (UCL), Agriculture and Agri-Food Canada, Saskatoon Research Centre, Agriculture and Agri-Food (AAFC), FP7-PEOPLE-2013-IRSES program (Project APHIWEB) [611810], Pest Management Centre [PRR15-040], Fyssen foundation, F.R.S.-FNRS Fonds de la Recherche Scientifique - FNRS, European Project: 611810,EC:FP7:PEOPLE,FP7-PEOPLE-2013-IRSES,APHIWEB(2014), Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES), and Agriculture and Agri-Food [Ottawa] (AAFC)
Subjects: 0106 biological sciences, 0301 basic medicine, Plasticity, genetic structures, Sitobion avenae, Population, Behavioral ecology, Light-intensity, Zoology, 010603 evolutionary biology, 01 natural sciences, 03 medical and health sciences, Polyphenism, Polymorphism, education, Ecology, Evolution, Behavior and Systematics, Abiotic component, Endosymbiont, education.field_of_study, Aphid, biology, fungi, food and beverages, biochemical phenomena, metabolism, and nutrition, biology.organism_classification, Light intensity, 030104 developmental biology, Animal ecology, Wheat, [SDE.BE]Environmental Sciences/Biodiversity and Ecology
Abstract: La version déposée inclut le dernier erratum (abstract) : https://doi.org/10.1007/s10682-020-10091-9; International audience; The occurrence of different color patterns in a population of a species can depend on genetic variations or plasticity to environmental conditions. Body color variation is under selection because it is involved in several ecological processes such as camouflage for prey-predator interactions or resistance to environmental variations. Among insects, aphids are known to produce different body-color morphs depending on their biotic and abiotic environments and their bacterial endosymbionts. The English-grain aphid (EGA) Sitobion avenae produces both red and green morphs in cereal fields. Using both field studies on the Canadian prairies (Saskatchewan) and laboratory experiments, we aimed to study the mechanisms that trigger plasticity in body coloration to better understand the ecological role of body coloration and color-change evolved by animals, including aphids. We first analyzed green and red morph EGA distribution on wheat ears in different fields and showed that red aphids were mostly located at the top of the ear and green aphids at the bottom. Then, using DNA sequencing, we showed that red and green morphs did not strongly differ in their bacterial endosymbiont composition and abundances. Finally, using a climate-chamber setup in the laboratory, we highlighted that EGA body-coloration is under light-intensity control and that it is possible to turn aphids from red back to green within a few days, and from green back to red within a couple of weeks (low-to-high and high-to-low light intensities, respectively). Light-intensity-controlled color-change likely results in adaptive plasticity in response to shifts in environmental conditions that can occur over the lifespan of an aphid, and is fully reversible, even at the adult stage.
Published: 2020

5. Mangrove microbiota along the urban-to-rural gradient of the Cayenne estuary (French Guiana, South America): Drivers and potential bioindicators

Author: Guillaume Dirberg, Tony Robinet, Lars-Eric Heimbürger-Boavida, Ronan Jézéquel, Amonda El Houssainy, Maud Fiard, Romain Walcker, Cécile Militon, Cédric Hubas, Léa Sylvi, Isabelle Bihannic, Franck Gilbert, Philippe Cuny, Emma Michaud, Dominique Lamy, Institut méditerranéen d'océanologie (MIO), Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Toulon (UTLN)-Centre National de la Recherche Scientifique (CNRS), Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU), Station de Biologie Marine de Concarneau, Direction générale déléguée à la Recherche, à l’Expertise, à la Valorisation et à l’Enseignement-Formation (DGD.REVE), Muséum national d'Histoire naturelle (MNHN)-Muséum national d'Histoire naturelle (MNHN), Centre de documentation de recherche et d'expérimentations sur les pollutions accidentelles des eaux (Cedre), Cedre, Institut d'écologie et des sciences de l'environnement de Paris (iEES Paris ), Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12)-Centre National de la Recherche Scientifique (CNRS)-Université de Paris (UP)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Laboratoire Ecologie Fonctionnelle et Environnement (ECOLAB), Université Toulouse III - Paul Sabatier (UT3), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Observatoire Midi-Pyrénées (OMP), Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Centre National de la Recherche Scientifique (CNRS), Laboratoire des Sciences de l'Environnement Marin (LEMAR) (LEMAR), Institut de Recherche pour le Développement (IRD)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Université de Brest (UBO)-Institut Universitaire Européen de la Mer (IUEM), Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), ANR-10-LABX-0025,CEBA,CEnter of the study of Biodiversity in Amazonia(2010), Aix-Marseille Université - AMU (FRANCE), Centre de Documentation, de Recherche et d'Expérimentations sur les pollutions accidentelles des eaux - CEDRE (FRANCE), Centre National de la Recherche Scientifique - CNRS (FRANCE), Institut Français de Recherche pour l'Exploitation de la MER - IFREMER (FRANCE), Institut National Polytechnique de Toulouse - Toulouse INP (FRANCE), Institut national de recherche pour l'agriculture, l'alimentation et l'environnement - INRAE (FRANCE), Institut de Recherche pour le Développement - IRD (FRANCE), Université Paris 1 Panthéon-Sorbonne (FRANCE), Sorbonne Université (FRANCE), Université de Bretagne Occidentale - UBO (FRANCE), Université Paris Est Créteil Val de Marne - UPEC (FRANCE), Université Toulouse III - Paul Sabatier - UT3 (FRANCE), Université de Caen Basse-Normandie (FRANCE), Museum National d'Histoire Naturelle - MNHN (FRANCE), Université de Toulon - UTLN (FRANCE), Université des Antilles et de la Guyane (FRANCE), Université de Paris - U-Paris (FRANCE), Institut d'Ecologie et des Sciences de l'Environnement de Paris - IEES (Paris, France), Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), Muséum national d'Histoire naturelle (MNHN), Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Laboratoire Ecologie Fonctionnelle et Environnement (LEFE), Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université de Toulouse (UT)-Observatoire Midi-Pyrénées (OMP), Institut de Recherche pour le Développement (IRD)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France -Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France -Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT), Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Observatoire Midi-Pyrénées (OMP), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France -Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France -Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées, and Université de Toulouse (UT)-Université de Toulouse (UT)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France-Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP)
Subjects: Geologic Sediments, Environmental Engineering, [SDE.MCG]Environmental Sciences/Global Changes, Biodiversité et Ecologie, 03 medical and health sciences, Dieldrin, chemistry.chemical_compound, Estuarine mangrove sediments, PAHs contamination, Humans, Environmental Chemistry, Organic matter, 14. Life underwater, Waste Management and Disposal, 030304 developmental biology, chemistry.chemical_classification, Ecologie, Environnement, 0303 health sciences, geography, geography.geographical_feature_category, Environmental Biomarkers, biology, Planctomycetes, 030306 microbiology, Ecology, Anthropogenic Effects, Microbiota, Organochlorine contaminants, Estuary, 15. Life on land, biology.organism_classification, [SDE.ES]Environmental Sciences/Environmental and Society, Pollution, 6. Clean water, French Guiana, chemistry, 13. Climate action, Wetlands, Low organic matter enrichment, Desulfobacteraceae, Environmental science, Proteobacteria, Mangrove, [SDE.BE]Environmental Sciences/Biodiversity and Ecology, Estuaries, Bioindicator, Acidobacteria
Abstract: International audience; The microbial communities inhabiting the Atlantic-East Pacific (AEP) mangroves have been poorly studied, and mostly comprise chronically polluted mangroves. In this study, we characterized changes in the structure and diversity of microbial communities of mangroves along the urban-to-rural gradient of the Cayenne estuary (French Guiana, South America) that experience low human impact. The microbial communities were assigned into 50 phyla. Proteobacteria, Chloroflexi, Acidobacteria, Bacteroidetes, and Planctomycetes were the most abundant taxa. The environmental determinants found to significantly correlated to the microbial communities at these mangroves were granulometry, dieldrin concentration, pH, and total carbon (TC) content. Furthermore, a precise analysis of the sediment highlights the existence of three types of anthropogenic pressure among the stations: (i) organic matter (OM) enrichment due to the proximity to the city and its wastewater treatment plant, (ii) dieldrin contamination, and (iii) naphthalene contamination. These forms of weak anthropogenic pressure seemed to impact the bacterial population size and microbial assemblages. A decrease in Bathyarchaeota, “Candidatus Nitrosopumilus”, and Nitrospira genera was observed in mangroves subjected to OM enrichment. Mangroves polluted with organic contaminants were enriched in Desulfobacteraceae, Desulfarculaceae, and Acanthopleuribacteraceae (with dieldrin or polychlorobiphenyl contamination), and Chitinophagaceae and Geobacteraceae (with naphthalene contamination). These findings provide insights into the main environmental factors shaping microbial communities of mangroves in the AEP that experience low human impact and allow for the identification of several potential microbial bioindicators of weak anthropogenic pressure.
Published: 2022

6. Modelling the damage costs of invasive alien species

Author: Christophe Diagne, Franck Courchamp, Emma J. Hudgins, Danish A. Ahmed, David Renault, Phillip J. Haubrock, Elsa Bonnaud, Ross N. Cuthbert, Gulf University for Science and Technology (GUST), McGill University = Université McGill [Montréal, Canada], Helmholtz Centre for Ocean Research [Kiel] (GEOMAR), Faculty of Fisheries and Protection of Waters [University of South Bohemia], University of South Bohemia, Senckenberg Research Institute and Natural History Museum [Frankfurt], Senckenberg – Leibniz Institution for Biodiversity and Earth System Research - Senckenberg Gesellschaft für Naturforschung, Leibniz Association-Leibniz Association, Ecosystèmes, biodiversité, évolution [Rennes] (ECOBIO), Université de Rennes (UR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR), Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Centre National de la Recherche Scientifique (CNRS), Institut Universitaire de France (IUF), Ministère de l'Education nationale, de l’Enseignement supérieur et de la Recherche (M.E.N.E.S.R.), Ecologie Systématique et Evolution (ESE), AgroParisTech-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), Kuwait Foundation for the Advancement of Sciences (KFAS) [PR1914SM-01], Gulf University for Science and Technology (GUST) internal seed fund [187092], Alexander von Humboldt FoundationAlexander von Humboldt Foundation, BiodivERsA-Belmont Forum Project 'Alien Scenarios' (BMBF/PT) [DLR 01LC1807C], InEECNRS [3647 CNRS], Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université de Rennes 1 (UR1), and Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)
Subjects: 0106 biological sciences, InvaCost, Population dynamics, Ecology (disciplines), Population, Non-native species, Cost modelling, 010603 evolutionary biology, 01 natural sciences, Invasive species, 03 medical and health sciences, Economic cost, Economic impact analysis, Logistic function, Biological invasions, education, Ecology, Evolution, Behavior and Systematics, health care economics and organizations, 030304 developmental biology, 0303 health sciences, education.field_of_study, Ecology, biology, 15. Life on land, biology.organism_classification, Sturnus, Resource damages, [SDE]Environmental Sciences, Socioeconomic impacts, Cost curve, [SDE.BE]Environmental Sciences/Biodiversity and Ecology, Logistic growth
Abstract: The rate of biological invasions is growing unprecedentedly, threatening ecological and socioeconomic systems worldwide. Quantitative understandings of invasion temporal trajectories are essential to discern current and future economic impacts of invaders, and then to inform future management strategies. Here, we examine the temporal trends of cumulative invasion costs by developing and testing a novel mathematical model with a population dynamical approach based on logistic growth. This model characterises temporal cost developments into four curve types (I - IV), each with distinct mathematical and qualitative properties, allowing for the parameterization of maximum cumulative costs, carrying capacities and growth rates. We test our model using damage cost data for eight genera (Rattus, Aedes, Canis, Oryctolagus, Sturnus, Ceratitis, Sus and Lymantria) extracted from the InvaCost database – which is the most up-to-date and comprehensive global compilation of economic cost estimates associated with invasive alien species. We find fundamental differences in the temporal dynamics of damage costs among genera, indicating they depend on invasion duration, species ecology and impacted sectors of economic activity. The fitted cost curves indicate a lack of broadscale support for saturation between invader density and impact, including for Canis, Oryctolagus and Lymantria, whereby costs continue to increase with no sign of saturation. For other taxa, predicted saturations may arise from data availability issues resulting from an underreporting of costs in many invaded regions. Overall, this population dynamical approach can produce cost trajectories for additional existing and emerging species, and can estimate the ecological parameters governing the linkage between population dynamics and cost dynamics.
Published: 2022

7. Threshold and weighted-distance methods: a combined multiscale approach improves explanatory power of forest carabid beetle abundance in agricultural landscape

Author: Benjamin Bergerot, Julie Betbeder, Solène Croci, Olivier Jambon, Jacques Baudry, Françoise Burel, Hugues Boussard, Romain Georges, Pierre-Gilles Lemasle, Ecosystèmes, biodiversité, évolution [Rennes] (ECOBIO), Université de Rennes (UR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR), Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Centre National de la Recherche Scientifique (CNRS), Biodiversité agroécologie et aménagement du paysage (UMR BAGAP), Ecole supérieure d'Agricultures d'Angers (ESA)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut Agro Rennes Angers, Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro), Forêts et Sociétés (UPR Forêts et Sociétés), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad), Département Environnements et Sociétés (Cirad-ES), Centro Agronómico Tropical de Investigación y Enseñanza - Tropical Agricultural Research and Higher Education Center (CATIE), Littoral, Environnement, Télédétection, Géomatique (LETG - Rennes ), Université de Brest (UBO)-Université de Rennes 2 (UR2)-Nantes Université (Nantes Univ)-Littoral, Environnement, Télédétection, Géomatique UMR 6554 (LETG), Université de Brest (UBO)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut de Géographie et d'Aménagement Régional de l'Université de Nantes (Nantes Univ - IGARUN), Nantes Université - pôle Humanités, Nantes Université (Nantes Univ)-Nantes Université (Nantes Univ)-Nantes Université - pôle Humanités, Nantes Université (Nantes Univ)-Nantes Université (Nantes Univ)-Centre National de la Recherche Scientifique (CNRS)-Institut de Géographie et d'Aménagement Régional de l'Université de Nantes (Nantes Univ - IGARUN), Nantes Université (Nantes Univ), Woodnet project, through the 2015-2016 BiodivERsA COFUND, ANR (Agence National de la Recherche, France) French National Research Agency (ANR), MINECO (Ministerio de Asuntos Economicos y Transformacion Digital, Spain), BELSPO (Politique scientifique federale, Belgium), Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES), AGROCAMPUS OUEST, Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Ecole supérieure d'Agricultures d'Angers (ESA)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Littoral, Environnement, Télédétection, Géomatique (LETG - Nantes), Institut de Géographie et d'Aménagement Régional de l'Université de Nantes (IGARUN), Université de Nantes (UN)-Université de Nantes (UN)-Université de Rennes 2 (UR2), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)-Université de Brest (UBO)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU)-École pratique des hautes études (EPHE), and Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Centre National de la Recherche Scientifique (CNRS)
Subjects: 0106 biological sciences, Weighted distance, Abax parallelepipedus, Geography, Planning and Development, Species distribution, abondance, Distribution des populations, 010603 evolutionary biology, 01 natural sciences, Abundance (ecology), Statistics, Relative species abundance, Nature and Landscape Conservation, Mathematics, Ecology, biology, [SDE.IE]Environmental Sciences/Environmental Engineering, 010604 marine biology & hydrobiology, 15. Life on land, Explained variation, biology.organism_classification, Écologie des populations, Metric (mathematics), Spatial ecology, Landscape metric, L20 - Écologie animale, Carabidae, Landscape ecology, U30 - Méthodes de recherche, Paysage agricole, [SDE.BE]Environmental Sciences/Biodiversity and Ecology, Multiscale approach
Abstract: International audience; Context To analyze the scales at which landscape structure influences ecological processes, two approaches with different underlying ecological assumptions exist; the usual threshold method and the weighted-distance method.Objectives We used abundance of species to test if the combination of weighted-distance and threshold approaches improves the explained variance of landscape metrics. Methods We developed a workflow using the two approaches to calculate metrics computed at multiple scales. The latter was developed using weighted metrics based on different weighted-distance functions, and one metric could be selected for more than one spatial scale. Then, we tested the explained variance of species distribution (the activity-density of Abax parallelepipedus) by these two approaches applied independently and then together in modeling a specific ecological response.Results The combination of metrics computed at multiple scales calculated by both weighted-distance and threshold method improved the predictive performance of the models. More precisely, adding metrics derived from the weighted-distance method to the threshold method significantly increased the explained variance when using the same environmental variables. The mean R-2 values of the selected model for the threshold method was 0.34 +/- 0.10, 0.49 +/- 0.11 with the weighted-distance method, and reached 0.71 +/- 0.07 with the two methods combined. These results demonstrate the importance of combining metrics using the weighted-distance method and the threshold method. In addition, activity-density was better explained by metrics selected at multiple scales.Conclusions This study highlights the importance of combining threshold and weighted-distance method at several scales to improve the explanation of ecological responses based on species abundance.
Published: 2022

8. Third and fourth trophic level composition shift in an aphid-parasitoid-hyperparasitoid food web limits aphid control in an intercropping system

Author: Estelle Postic, Joan van Baaren, Christelle Buchard, Stéphanie Llopis, Franck Duval, Emma Jeavons, Cécile Le Lann, Anne Le Ralec, Ecosystèmes, biodiversité, évolution [Rennes] (ECOBIO), Université de Rennes (UR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR), Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Centre National de la Recherche Scientifique (CNRS), Fondation Yves Rocher, Institut de France, LTSER Zone Atelier Armorique (LTSER), Institut de Génétique, Environnement et Protection des Plantes (IGEPP), Université de Rennes (UR)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut Agro Rennes Angers, Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro), This study was funded by the ANRT (Association Nationale de la Recherche et de la Technologie), the company Yves Rocher and the FLEUR project (APR-PSPE Contribuer à l'essor du biocontrôle)., Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES), LTSER-FR Zone Atelier Armorique, Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)-AGROCAMPUS OUEST, and Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)
Subjects: 0106 biological sciences, Biological pest control, biological control, 010603 evolutionary biology, 01 natural sciences, Parasitoid, functional community composition, Entomophagous parasite, Trophic level, alternative host, 2. Zero hunger, Aphid, Ecology, biology, intercrop, Intercropping, 15. Life on land, biology.organism_classification, cereal crop, Food web, 010602 entomology, Agronomy, Composition (visual arts), [SDE.BE]Environmental Sciences/Biodiversity and Ecology, hyperparasitism, leguminous crop
Abstract: International audience; Understanding how resource diversification affects ecological interactions, food web structure and ecosystem functioning is essential in both fundamental and applied ecology. While plant diversification strategies (either in-field or around-field) are often proposed in agricultural landscapes as practices to improve the biological control of herbivores by natural enemies, results remain variable and unsure. Here, we studied the effect of an in-field diversification practice (the intercropping of leguminous crops within cereal fields, an increasingly common practice but with inconsistent results on biological control) on cereal aphid control and the structure of a cereal aphid-parasitoid-hyperparasitoid food web for 2 years. We report that aphid control was not increased in mixed fields, nor was cereal parasitoid diversity and food web complexity. Nevertheless, the provision of alternative hosts in mixed fields led to a functional community composition shift, favouring generalist parasitoid species over specialist ones. Moreover, we observed a higher hyperparasitism rate in mixed fields, suggesting that secondary parasitoids were favoured by alternative resources, which may have disrupted aphid control by primary parasitoids. Synthesis and applications. This study demonstrates that parasitoid community composition shift and increased top-down control by the fourth trophic level can impact parasitoid efficiency to control herbivores. These results highlight the necessity to study fine-scale mechanisms within food webs to be able to set up efficient methods to support biodiversity and associated ecosystem services in agricultural landscapes.
Published: 2022

9. Evolution of putative barrier loci at an intermediate stage of speciation with gene flow in campions (Silene)

Author: Sylvain Glémin, Xiaodong Liu, Sophie Karrenberg, Uppsala University, IT University of Copenhagen, Ecosystèmes, biodiversité, évolution [Rennes] (ECOBIO), Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES), VetenskapsradetSwedish Research Council [2012-03622], IT University of Copenhagen (ITU), Université de Rennes (UR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR), and Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Centre National de la Recherche Scientifique (CNRS)
Subjects: Gene Flow, 0106 biological sciences, 0301 basic medicine, Genetic Speciation, media_common.quotation_subject, Population, 010603 evolutionary biology, 01 natural sciences, Gene flow, Evolutionsbiologi, 03 medical and health sciences, Effective population size, demographic modelling, Gene density, ecological speciation, Genetics, Speciation and Hybridization, Selection, Genetic, Genetik, Silene, education, Ecology, Evolution, Behavior and Systematics, media_common, Isolation by distance, Evolutionary Biology, education.field_of_study, Genome, barrier loci, biology, Genetic Drift, genomic landscape, Genomics, 15. Life on land, biology.organism_classification, Silene dioica, Speciation, 030104 developmental biology, Evolutionary biology, Original Article, ORIGINAL ARTICLES, [SDE.BE]Environmental Sciences/Biodiversity and Ecology
Abstract: International audience; Understanding the origin of new species is a central goal in evolutionary biology. Diverging lineages often evolve highly heterogeneous patterns of genetic differentiation; however, the underlying mechanisms are not well understood. We investigated evolutionary processes governing genetic differentiation between the hybridizing campionsSilene dioica(L.) Clairv. andS. latifoliaPoiret. Demographic modelling indicated that the two species diverged with gene flow. The best-supported scenario with heterogeneity in both migration rate and effective population size suggested that a small proportion of the loci evolved without gene flow. Differentiation (F-ST) and sequence divergence (d(XY)) were correlated and both tended to peak in the middle of most linkage groups, consistent with reduced gene flow at highly differentiated loci. Highly differentiated loci further exhibited signatures of selection. In between-species population pairs, isolation by distance was stronger for genomic regions with low between-species differentiation than for highly differentiated regions that may contain barrier loci. Moreover, differentiation landscapes within and between species were only weakly correlated, suggesting that linked selection due to shared recombination and gene density landscapes is not the dominant determinant of genetic differentiation in these lineages. Instead, our results suggest that divergent selection shaped the genomic landscape of differentiation between the twoSilenespecies, consistent with predictions for speciation in the face of gene flow.
Published: 2020

10. Tracking the evolutionary history of the Allium ampeloprasum L. complex (section Allium) provides evidence of the contribution of North African diploids to the formation of allopolyploid horticultural groups

Author: Malika Ourari, Rachid Amirouche, Nabila Amirouche, Abdelkader Aïnouche, Thinhinan Khedim, Jean Keller, Malika L. Aïnouche, Université des Sciences et de la Technologie Houari Boumediene [Alger] (USTHB), Ecosystèmes, biodiversité, évolution [Rennes] (ECOBIO), Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES), Université Abderrahmane Mira [Béjaïa], Laboratoire de Recherche en Sciences Végétales (LRSV), Université Toulouse III - Paul Sabatier (UT3), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS), international Project CMEP-Tassili Hubert Curien, 'Polyploidy, Genome Evolution and Biodiversity' [08 MDU 724], Laboratory of Biology and Physiology of Organisms, University of Sciences and Technology Houari Boumediene (USTHB, Algiers, Algeria), UMR-CNRS 6553 Ecobio, University of Rennes 1 (France), CNEPRU project [F00220100043], USTHB-internship grants, Université des Sciences et de la Technologie Houari Boumediene = University of Sciences and Technology Houari Boumediene [Alger] (USTHB), Université de Rennes (UR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR), Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Centre National de la Recherche Scientifique (CNRS), and Université de Toulouse (UT)-Université de Toulouse (UT)-Centre National de la Recherche Scientifique (CNRS)
Subjects: 0106 biological sciences, 0301 basic medicine, Molecular phylogeny, Plant Science, [SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics, Phylogenetics and taxonomy, 01 natural sciences, 03 medical and health sciences, Intergenic region, Allium ampeloprasum, Botany, Genetics, Wild genetic resources, Domestication, Ecology, Evolution, Behavior and Systematics, 2. Zero hunger, biology, Allium ampeloprasum complex, Diploids, food and beverages, Polyploids, Polyploid complex, [SDV.BV.BOT]Life Sciences [q-bio]/Vegetal Biology/Botanics, 15. Life on land, biology.organism_classification, 030104 developmental biology, Algeria, Molecular phylogenetics, Allium, Gene pool, Ploidy, Agronomy and Crop Science, 010606 plant biology & botany
Abstract: International audience; The economically important Allium ampeloprasum L. represents a polyploid complex, comprising hexa- and octoploid Great Headed Garlic horticultural cultivars (6x-8x GHG) and several traditional varieties of the tetraploid (4x) leeks (Leek, Bulbous leek, Kurrat and Pearl onion). Its wild representatives were indicated as rare in the Mediterranean region. This study aims to explore the diversity and origin of polyploidy in this complex, including its wild relatives A. baeticum Bossier and A. guttatum Steven with particular focus on the poorly investigated North-African region. Natural populations were sampled in Algeria in various bioclimatic conditions, then subjected to karyological and molecular phylogenetic analyses based on nuclear rDNA ITS region and chloroplast trnL-trnF and trnD-trnT intergenic spacers. Comparative analyses included available Genbank accession sequences representing old-world relatives. Chromosome count surveys revealed an unexpected higher occurrence of diploid (2n = 16) than tetraploid (2n = 32) cytotypes. The phylogenetic analyses first allowed positioning the Algerian material within the A. ampeloprasum complex. Interestingly, all the Algerian diploid and tetraploid populations from A. ampeloprasum and A. baeticum form a distinct monophyletic group. The results provide novel and robust evidence demonstrating that the North African diploid A. ampeloprasum genetic pool widely contributed as a source of progenitors not only for the A. ampeloprasum and A. baeticum Algerian tetraploids, but also in the formation of the GHG and Leek cultivated allopolyploids. Therefore, the North African populations emerge as an important reservoir of new wild genetic resources of great interest for tracing the origin of crop domestication and for breeding programs of cultivated varieties.
Published: 2020

11. Effect of density and neighbours on interactions between invasive plants of similar growth form

Author: Márcio José Silveira, Gabrielle Thiébaut, Ecosystèmes, biodiversité, évolution [Rennes] (ECOBIO), Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES), Universidade Estadual de Maringá [Maringá] (UEM), National Council for Scientific and Technological Development (CNPq), Université de Rennes (UR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR), and Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Centre National de la Recherche Scientifique (CNRS)
Subjects: 0106 biological sciences, media_common.quotation_subject, Elodea canadensis, Non-native species, Clonal plants, Introduced species, Hydrocharitaceae, Aquatic Science, Biology, 010603 evolutionary biology, 01 natural sciences, Competition (biology), Invasive species, Aquatic plant, Egeria densa, 14. Life underwater, Ecology, Evolution, Behavior and Systematics, media_common, Ecology, 010604 marine biology & hydrobiology, Lagarosiphon major, [SDV.BV.BOT]Life Sciences [q-bio]/Vegetal Biology/Botanics, 15. Life on land, Morphological traits, biology.organism_classification, [SDE.BE]Environmental Sciences/Biodiversity and Ecology
Abstract: International audience; Invasive aquatic plants constitute a great problem in many freshwater systems. Although many studies have addressed the potential threats of invasion by exotic species in aquatic ecosystems, few studies have considered the interactions (competition, facilitation, coexistence) between exotic aquatic plants of similar growth form in invaded communities. Our aim was to investigate experimentally the effect of density in monocultures and the effect of neighbour identity and plant density on a focal species in mixed cultures. We used Elodea canadensis, Egeria densa and Lagarosiphon major as model species and conducted two experiments, one in a monoculture and another in a mixed culture following an additive design. Individuals were planted in pots with several treatments based on the identity and density of neighbour species. Our results demonstrated that the development of an invasive submerged plant could be influenced either positively (facilitation) or negatively (competition or inhibition) by the presence of more than one neighbour species of different densities. An increase in density significantly stimulated competition intensity, although the effect of density on the performance of the invader also depended on neighbour identity. A facilitative effect of E. canadensis on the apical growth of E. densa was established. However, despite these results, the competitive outcome also depended on other environmental factors (e.g. underwater radiation), not on plant density and neighbour identity alone.
Published: 2020

12. Response of earthworm communities to soil engineering and soil isolation in urban landscapes

Author: Daniel Cluzeau, Kevin Hoeffner, Jeanne Maréchal, Xavier Marié, Ecosystèmes, biodiversité, évolution [Rennes] (ECOBIO), Université de Rennes (UR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR), Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Centre National de la Recherche Scientifique (CNRS), Université Paris-Sud - Paris 11 (UP11), This research was supported by the 'Association Nationale de la Recherche et de la Technologie' (ANRT) through an industrial CIFRE convention between the Sol Paysage company and the University of Rennes 1 (Number of convention N° 2018/0569, http://www.anrt.asso.fr/fr/cifre-7843)., Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES), and Université Paris Sud Orsay
Subjects: Environmental Engineering, Amendment, Context (language use), Pedological engineering, 010501 environmental sciences, Management, Monitoring, Policy and Law, 01 natural sciences, Ecosystem services, Urban soils, Abundance (ecology), 11. Sustainability, Geotechnical engineering, 0105 earth and related environmental sciences, Nature and Landscape Conservation, 2. Zero hunger, Connectivity, biology, Earthworm, Brown network, 04 agricultural and veterinary sciences, 15. Life on land, Isolation (microbiology), biology.organism_classification, Ecological continuity, 13. Climate action, Soil water, 040103 agronomy & agriculture, 0401 agriculture, forestry, and fisheries, Environmental science, Species richness, [SDE.BE]Environmental Sciences/Biodiversity and Ecology
Abstract: International audience; Engineered soils provide numerous ecosystem services in urban landscapes, such as water regulation and plant growth. They are constructed to optimize soil physicochemical properties but their biological properties are given little consideration. In particular, earthworm communities may be highly impacted by soil engineering processes and soil isolation caused by asphalted surfaces separating soils, and in particular roadside soils, from pseudo-natural soils. In this context, this study aimed to evaluate (i) the effects of soil engineering processes applied to construct roadside soils, and (ii) the effects of soil isolation from pseudo-natural soils by asphalted surfaces on earthworm communities. The study was conducted in an urban landscape in the suburbs of Paris, France. We sampled earthworms in roadside soils from two distinct soil engineering processes: basic engineering (BER) associated with shallow stripping depth and advanced engineering (AER) associated with deep stripping depth and organic amendment. Within each soil engineering process, two levels of soil isolation were defined depending on the asphalted surface separating roadside soils from pseudo-natural soils: light isolation (LI) in case of a narrow cycle path, and high isolation (HI) in case of a wide road. Soil engineering did not affect the total earthworm abundance whereas the total species richness was negatively impacted in comparison to nearby pseudo-natural soils. High soil isolation differently impacted earthworm communities depending on the engineering process. Regarding AER, earthworm abundance and species richness were significantly lower in HI than in LI while no differences were observed between BER-LI and BER-HI. Overall, engineering processes define the soil's ability to host earthworms, and soil isolation defines soil ability to be colonized from nearby environments. Considering the contribution of earthworms to the provision of ecosystem services, both soil engineering and soil isolation should be taken into account in urban projects to optimize their development in urban landscapes. © 2021 Elsevier B.V.
Published: 2021

13. Acclimation, duration and intensity of cold exposure determine the rate of cold stress accumulation and mortality in Drosophila suzukii

Author: Hervé Colinet, Pénélope Tarapacki, Lisa Bjerregaard Jørgensen, Johannes Overgaard, Mads Kuhlmann Andersen, Jesper Givskov Sørensen, Aarhus University [Aarhus], Carleton University, Ecosystèmes, biodiversité, évolution [Rennes] (ECOBIO), Université de Rennes (UR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR), Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Centre National de la Recherche Scientifique (CNRS), This research was funded by the Danish Council for Independent Research|Natural Sciences, Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université de Rennes 1 (UR1), and Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)
Subjects: 0106 biological sciences, Physiology, Acclimatization, Population, Plasticity, 010603 evolutionary biology, 01 natural sciences, invasive species, Stress (mechanics), 03 medical and health sciences, Animal science, Heat shock protein, Animals, Drosophila Proteins, education, Drosophila suzukii, Heat-Shock Proteins, 030304 developmental biology, Ion balance, 0303 health sciences, education.field_of_study, Invasive species, biology, Heat shock proteins, Thermal death time curves, Cold-Shock Response, Thermal death time, ion balance, Chill tolerance, biology.organism_classification, hyperkalemia, Cold Temperature, Insect Science, Ectotherm, Hyperkalemia, chill tolerance, Drosophila, [SDE.BE]Environmental Sciences/Biodiversity and Ecology
Abstract: The spotted wing drosophila (SWD), Drosophila suzukii, is a major invasive fruit pest. There is strong consensus that low temperature is among the main drivers of SWD population distribution, and the invasion success of SWD is also linked to its thermal plasticity. Most studies on ectotherm cold tolerance focus on exposure to a single stressful temperature but here we investigated how cold stress intensity affected survival duration across a broad range of low temperatures (−7 to +3 °C). The analysis of Lt50 at different stressful temperatures (Thermal Death Time curve - TDT) is based on the suggestion that cold injury accumulation rate increases exponentially with the intensity of thermal stress. In accordance with the hypothesis, Lt50 of SWD decreased exponentially with temperature. Further, comparison of TDT curves from flies acclimated to 15, 19 and 23 °C, respectively, showed an almost full compensation with acclimation such that the temperature required to induce mortality over a fixed time decreased almost 1 °C per °C lowering of acclimation temperature. Importantly, this change in cold tolerance with acclimation was uniform across the range of moderate to intense cold stress exposures examined. To understand if cold stress at moderate and intense exposures affects the same physiological systems we examined how physiological markers/symptoms of chill injury developed at different intensities of the cold stress. Specifically, hsp23 expression and extracellular [K+] were measured in flies exposed to different intensities of cold stress (−6, −2 and +2 °C) and at various time points corresponding to the same progression of injury (equivalent to 1/3, 2/3 or 3/3 of Lt50). The different cold stress intensities all triggered hsp23 expression following 2 h of recovery, but patterns of expression differed. At the most intense cold stress (−6 and −2 °C) a gradual increase with time was found. In contrast, at +2 °C an initial increase was followed by a dissipating expression. A gradual perturbation of ion balance (hyperkalemia) was also found at all three cold stress intensities examined, with only slight dissimilarities between treatment temperatures. Despite some differences between the three cold intensities examined, the results generally support the hypothesis that intense and moderate cold stress induces the same physiological perturbation. This suggests that cold stress experienced during natural fluctuating conditions is additive and the results also illustrate that the rate of injury accumulation increases dramatically (exponentially) with decreasing temperature (increasing stress).
Published: 2021

14. Peatland microhabitat heterogeneity drives phototrophic microbe distribution and photosynthetic activity

Author: Régis Céréghino, Martin Küttim, Samuel Hamard, Vincent E. J. Jassey, Laboratoire Ecologie Fonctionnelle et Environnement (ECOLAB), Université Toulouse III - Paul Sabatier (UT3), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Observatoire Midi-Pyrénées (OMP), Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Centre National de la Recherche Scientifique (CNRS), Laboratoire Ecologie Fonctionnelle et Environnement (LEFE), Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université de Toulouse (UT)-Observatoire Midi-Pyrénées (OMP), Institut de Recherche pour le Développement (IRD)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France -Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France -Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT), and ANR-17-CE01-0007,MIXOPEAT,Repenser le cycle du carbone des tourbières : identifier le rôle des protistes mixotrophes dans la pompe à carbone biologique(2017)
Subjects: 0106 biological sciences, Microbial diversity, Peat, Algae, Peatland, Soil carbon uptake, Forests, 010603 evolutionary biology, 01 natural sciences, Microbiology, Sphagnum, [SDV.MP.PRO]Life Sciences [q-bio]/Microbiology and Parasitology/Protistology, Soil, [SDV.EE.ECO]Life Sciences [q-bio]/Ecology, environment/Ecosystems, Sphagnopsida, Dominance (ecology), Photosynthesis, Ecology, Evolution, Behavior and Systematics, Soil Microbiology, ComputingMilieux_MISCELLANEOUS, Abiotic component, Biomass (ecology), biology, Phototroph, Ecology, 010604 marine biology & hydrobiology, Soil carbon, Carbon cycle, Phototrophs, 15. Life on land, biology.organism_classification, Light intensity, 13. Climate action, Metabarcoding, Primary productivity
Abstract: Phototrophic microbes are widespread in soils, but their contribution to soil carbon (C) uptake remains underexplored in most terrestrial systems, including C-accreting systems such as peatlands. Here, by means of metabarcoding and ecophysiological measurements, we examined how microbial photosynthesis and its biotic (e.g., phototrophic community structure, biomass) and abiotic drivers (e.g., Sphagnum moisture, light intensity) vary across peatland microhabitats. Using a natural gradient of microhabitat conditions from pool to forest, we show that the structure of phototrophic microbial communities shifted from a dominance of eukaryotes in pools to prokaryotes in forests. We identified five groups of co-occurring phototrophic operational taxonomic units with specific environmental preferences across the gradient. Along with such structural changes, we found that microbial C uptake was the highest in the driest and shadiest microhabitats. This study renews and improves current views on phototrophic microbes in peatlands, as the contribution of microbial photosynthesis to peatland C uptake has essentially been studied in wet microhabitats.
Published: 2021

15. A multiscale analysis of landscape resistance reveals genetic isolates in an endangered forest-specialist species the Barbary macaque (Macaca sylvanus)

Author: Dominique Vallet, Eric J. Petit, Mohamed Qarro, Aude Ernoult, Yann Rantier, Pascaline Le Gouar, Stéphane Dréano, Nelly Ménard, Ecosystèmes, biodiversité, évolution [Rennes] (ECOBIO), Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES), Station Biologique de Paimpont CNRS UMR 6653 (OSUR), Université de Rennes 1 (UR1), Écologie et santé des écosystèmes (ESE), AGROCAMPUS OUEST, Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Institut de Génétique et Développement de Rennes (IGDR), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)-Centre National de la Recherche Scientifique (CNRS)-Structure Fédérative de Recherche en Biologie et Santé de Rennes ( Biosit : Biologie - Santé - Innovation Technologique ), Ecole Nationale Forestière d'Ingénieurs du Maroc [Salé] (ENFI), contrat 'Service Provincial des Eaux et Forêts d'Ifrane(Maroc)/University of Rennes 1', Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-AGROCAMPUS OUEST, Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro), Structure Fédérative de Recherche en Biologie et Santé de Rennes ( Biosit : Biologie - Santé - Innovation Technologique )-Centre National de la Recherche Scientifique (CNRS)-Université de Rennes 1 (UR1), Université de Rennes (UR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR), Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Centre National de la Recherche Scientifique (CNRS), Université de Rennes (UR), Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-INSTITUT AGRO Agrocampus Ouest, and Université de Rennes (UR)-Centre National de la Recherche Scientifique (CNRS)-Structure Fédérative de Recherche en Biologie et Santé de Rennes ( Biosit : Biologie - Santé - Innovation Technologique )
Subjects: 0106 biological sciences, Primate conservation, Population, Endangered species, 010603 evolutionary biology, 01 natural sciences, Macaque, Landscape genetics, 03 medical and health sciences, biology.animal, Genetic erosion, education, Ecology, Evolution, Behavior and Systematics, 030304 developmental biology, Nature and Landscape Conservation, Isolation by distance, Isolation by resistance, 0303 health sciences, education.field_of_study, biology, Ecology, Macaca sylvanus, Landscape heterogeneity, Dispersal, 15. Life on land, biology.organism_classification, Gene flow, Genetic structure, Biological dispersal, [SDE.BE]Environmental Sciences/Biodiversity and Ecology
Abstract: International audience; In forest-specialist mammals, forest loss may induce resistance to animal movement and reduce gene flow between populations, and thereby increase genetic erosion and extinction risks for populations. Understanding how landscape features affect gene flow is of critical importance for conservation. Using landscape genetic tools at multiple spatial scales, we assessed the effects of landscape heterogeneity (in particular the presence of wide open or rural habitats) on gene flow in an endangered forest-specialist species – the Barbary macaque (Macaca sylvanus) –, in its major forest site in Morocco. We genotyped 248 individuals from 23 macaque groups using 11 microsatellite loci. We modelled different scenarios of isolation by landscape resistance. We further tested the relationships between genetic distance and isolation by resistance, after controlling for the effect of isolation by distance. Our results revealed a significant genetic structure and a disruption of gene flow even in geographic proximity. Whatever the spatial scale, remoteness from the forest edge beyond 1km acted as a barrier to macaque movements. In addition, at a fine scale, human-dominated areas were also detected as a barrier. The detection of private alleles in each population suggests an ongoing process of isolation. The preservation of the Barbary macaque implies 1) strictly avoiding all silvicultural practices (in particular clear-cutting of holm oak forests) that could contribute to increase distances between forest patches, 2) restoring corridors between forests, 3) and preserving key small forest patches as potential stepping stones facilitating macaque dispersal.
Published: 2021

16. In situ use of bivalves and passive samplers to reveal water contamination by microcystins along a freshwater-marine continuum in France

Author: Myriam Bormans, Zouher Amzil, Emilie Lance, Véronique Savar, Alexandra Lepoutre, Elise Robert, Stress Environnementaux et BIOsurveillance des milieux aquatiques (SEBIO), Université Le Havre Normandie (ULH), Normandie Université (NU)-Normandie Université (NU)-Université de Reims Champagne-Ardenne (URCA)-SFR Condorcet, Université de Reims Champagne-Ardenne (URCA)-Université de Picardie Jules Verne (UPJV)-Centre National de la Recherche Scientifique (CNRS)-Université de Reims Champagne-Ardenne (URCA)-Université de Picardie Jules Verne (UPJV)-Centre National de la Recherche Scientifique (CNRS)-Institut National de l'Environnement Industriel et des Risques (INERIS), Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER), Ecosystèmes, biodiversité, évolution [Rennes] (ECOBIO), Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES), This work was funded by the French National Research Program for Environmental and Occupational Health of the French Agency for Food, Environmental and Occupational Health & Safety (ANSES 2015/1/191, Bieautox program)., Institut National de l'Environnement Industriel et des Risques (INERIS)-Université de Reims Champagne-Ardenne (URCA)-Université Le Havre Normandie (ULH), Normandie Université (NU)-Normandie Université (NU)-SFR Condorcet, Université de Reims Champagne-Ardenne (URCA)-Centre National de la Recherche Scientifique (CNRS)-Université de Reims Champagne-Ardenne (URCA)-Centre National de la Recherche Scientifique (CNRS), Université de Rennes (UR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR), and Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Centre National de la Recherche Scientifique (CNRS)
Subjects: 0106 biological sciences, In situ, Cyanobacteria, biosurvey, Environmental Engineering, Microcystins, Cyanotoxins, [SDV]Life Sciences [q-bio], Fresh Water, 01 natural sciences, 03 medical and health sciences, cyanotoxins, Phytoplankton, Animals, Humans, 14. Life underwater, Waste Management and Disposal, Ecosystem, 030304 developmental biology, Water Science and Technology, Civil and Structural Engineering, molluscs, 0303 health sciences, geography, geography.geographical_feature_category, biology, 010604 marine biology & hydrobiology, Ecological Modeling, Aquatic ecosystem, Solid phase adsorption toxin tracking (SPATT), fungi, Water, Estuary, Molluscs, Mussel, Contamination, biology.organism_classification, Pollution, 6. Clean water, Mytilus, Bivalvia, solid phase adsorption toxin tracking (SPATT), Biosurvey, Environmental chemistry, Environmental science
Abstract: International audience; Cyanobacteria are a potential threat to aquatic ecosystems and human health because of their ability to produce cyanotoxins, such as microcystins (MCs). MCs are regularly monitored in fresh waters, but rarely in estuarine and marine waters despite the possibility of their downstream export. Over a period of two years, we monthly analyzed intracellular (in phytoplankton) and extracellular (dissolved in water) MCs at five stations along a river continuum from a freshwater reservoir with ongoing cyanobacterial blooms to the coast of Brittany, France. MCs were quantified using two integrative samplers placed at each site: solid phase adsorption toxin tracking (SPATT) samplers for collecting extracellular MCs and caged mussels (Anodonta anatina and Mytilus edulis) filter-feeding on MC-producing cyanobacteria. The MC transfer was demonstrated each year during five months at estuarine sites and sporadically at the marine outlet. SPATT samplers integrated extracellular MCs, notably at low environmental concentrations (0.2 µg/L) and with the same variant profile as in water. The mussel A. anatina highlighted the presence of MCs including at intracellular concentrations below 1 µg/L. M. edulis more efficiently revealed the MC transfer at estuarine sites than water samplings. Bivalves showed the same MC variant profile as phytoplankton samples, but with differential accumulation capacities between the variants and the two species. Using SPATT or bivalves can give a more accurate assessment of the contamination level of a freshwater-marine continuum, in which the MC transfer can be episodic. MC content in M. edulis represents a potent threat to human health if considering updated French guideline values, and particularly the total (free and protein-bound) MC content, highlighting the necessity to include cyanotoxins in the monitoring of seafood originating from estuarine areas.
Published: 2021

17. Exposure to foreign gut microbiota can facilitate rapid dietary shifts

Author: Adam M. Fisher, Anne Lizé, Andrea D Dewhurst, Chloe Heys, Zenobia Lewis, University of Liverpool, Staffordshire University, Ecosystèmes, biodiversité, évolution [Rennes] (ECOBIO), Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES), Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), Université de Rennes (UR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR), Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Centre National de la Recherche Scientifique (CNRS), and NE/L002450/1, Natural Environment Research Council
Subjects: 0106 biological sciences, Dietary Fiber, Evolution, Science, Ecology (disciplines), Niche, Zoology, Gut flora, 010603 evolutionary biology, 01 natural sciences, digestive system, Article, 03 medical and health sciences, Feces, Dietary Fats, Unsaturated, Animals, Drosophila, Organism, 030304 developmental biology, 0303 health sciences, Multidisciplinary, biology, Ecology, Mechanism (biology), fungi, digestive, oral, and skin physiology, food and beverages, biology.organism_classification, Diet, Gastrointestinal Microbiome, Colonisation, Food resources, Medicine, [SDE.BE]Environmental Sciences/Biodiversity and Ecology
Abstract: Dietary niche is fundamental for determining species ecology; thus, a detailed understanding of what drives variation in dietary niche is vital for predicting ecological shifts and could have implications for species management. Gut microbiota can be important for determining an organism’s dietary preference, and therefore which food resources they are likely to exploit. Evidence for whether the composition of the gut microbiota is plastic in response to changes in diet is mixed. Also, the extent to which dietary preference can be changed following colonisation by new gut microbiota from different species is unknown. Here, we use Drosophila spp. to show that: (1) the composition of an individual’s gut microbiota can change in response to dietary changes, and (2) ingestion of foreign gut microbes can cause individuals to be attracted to food types they previously had a strong aversion to. Thus, we expose a mechanism for facilitating rapid shifts in dietary niche over short evolutionary timescales.
Published: 2021

18. Sediment reworking by the burrowing polychaete Hediste diversicolor modulated by environmental and biological factors across the temperate North Atlantic. A tribute to Gaston Desrosiers

Author: Patrick Gillet, Ronnie N. Glud, Gary T. Banta, Erik Kristensen, Martin Solan, Renald Belley, Robert C. Aller, Anthony Maire, Jonas S. Gunnarsson, Michael J. Townsend, Franck Gilbert, Philippe Cuny, Lois Calder, Stina Lindqvist, Xavier de Montaudouin, Emma Michaud, Stephen Widdicombe, Judith R. Renz, Luca Giorgio Bellucci, Stefan Hulth, Karl Norling, Philippe Archambault, Jasmin A. Godbold, Susanne P. Eriksson, Stefan Forster, Nils Volkenborn, Georges Stora, Laboratoire Ecologie Fonctionnelle et Environnement (LEFE), Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université de Toulouse (UT)-Observatoire Midi-Pyrénées (OMP), Institut de Recherche pour le Développement (IRD)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France -Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France -Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT), University of Southern Denmark (SDU), School of Marine and Atmospheric Sciences [Stony Brook] (SoMAS), Stony Brook University [SUNY] (SBU), State University of New York (SUNY)-State University of New York (SUNY), Roskilde University, Institut des Sciences de la MER de Rimouski (ISMER), Université du Québec à Rimouski (UQAR), Québec-Océan, Université Laval [Québec] (ULaval), Istituto di Scienze Marine [Bologna] (ISMAR), Istituto di Science Marine (ISMAR ), National Research Council of Italy | Consiglio Nazionale delle Ricerche (CNR)-National Research Council of Italy | Consiglio Nazionale delle Ricerche (CNR), Scottish Association for Marine Science (SAMS), Institut méditerranéen d'océanologie (MIO), Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Toulon (UTLN)-Centre National de la Recherche Scientifique (CNRS), Environnements et Paléoenvironnements OCéaniques (EPOC), Observatoire aquitain des sciences de l'univers (OASU), Université Sciences et Technologies - Bordeaux 1 (UB)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université Sciences et Technologies - Bordeaux 1 (UB)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-École Pratique des Hautes Études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Centre National de la Recherche Scientifique (CNRS), Department of Biological and Environmental Sciences [Gothenburg], University of Gothenburg (GU), University of Rostock, Mer, molécules et santé (MMS UCO), Université Catholique de l'Ouest (UCO)-PRES Université Nantes Angers Le Mans (UNAM), Ocean and Earth Science [Southampton], University of Southampton-National Oceanography Centre (NOC), University of Southampton, Nordic Centre of Earth Evolution (NORDCEE), University of Copenhagen = Københavns Universitet (UCPH), Department of Ecology, Environment and Plant Sciences [Stockholm], Stockholm University, Department of Chemistry and Molecular Biology [Gothenburg], Laboratoire des Sciences de l'Environnement Marin (LEMAR) (LEMAR), Institut de Recherche pour le Développement (IRD)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Université de Brest (UBO)-Institut Universitaire Européen de la Mer (IUEM), Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), National Institute of Water and Atmosphere [Hamilton] (NIWA), Alfred Wegener Institute for Polar and Marine Research (AWI), Plymouth Marine Laboratory (PML), Centre National de la Recherche Scientifique - CNRS (FRANCE), Institut National Polytechnique de Toulouse - Toulouse INP (FRANCE), Université Toulouse III - Paul Sabatier - UT3 (FRANCE), Laboratoire Ecologie Fonctionnelle et Environnement (ECOLAB), Université Toulouse III - Paul Sabatier (UT3), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Observatoire Midi-Pyrénées (OMP), Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Centre National de la Recherche Scientifique (CNRS), Consiglio Nazionale delle Ricerche (CNR)-Consiglio Nazionale delle Ricerche (CNR), UMR 5805 Environnements et Paléoenvironnements Océaniques et Continentaux (EPOC), Université Sciences et Technologies - Bordeaux 1-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université Sciences et Technologies - Bordeaux 1-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-École pratique des hautes études (EPHE), University of Copenhagen = Københavns Universitet (KU), Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), and Plymouth Marine Laboratory
Subjects: 0106 biological sciences, Biodiversité et Ecologie, Functional response group, Aquatic Science, Intraspecific variation, 010603 evolutionary biology, 01 natural sciences, Bioturbation, Sediment reworking, Hediste diversicolor, Functional effect group, [SDV.EE.ECO]Life Sciences [q-bio]/Ecology, environment/Ecosystems, BioturbationSediment reworking, Organic matter, Ecosystem, 14. Life underwater, Nereis, Ecology, Evolution, Behavior and Systematics, chemistry.chemical_classification, Biomass (ecology), biology, 010604 marine biology & hydrobiology, Sediment, 15. Life on land, biology.organism_classification, Oceanography, chemistry, Ecosystèmes, 13. Climate action, Benthic zone, [SDE.BE]Environmental Sciences/Biodiversity and Ecology
Abstract: Particle mixing and irrigation of the seabed by benthic fauna (bioturbation) have major impacts on ecosystem functions such as remineralization of organic matter and sediment-water exchange. As a tribute to Prof. Gaston Desrosiers by the Nereis Park association, eighteen laboratories carried out a collaborative experiment to acquire a global snapshot of particle reworking by the polychaete Hediste diversicolor at 16 sites surrounding the Northern Atlantic. Organisms and soft sediments were collected during May – July at different geographical locations and, using a common laboratory protocol, particulate fluorescent tracers (‘luminophores’) were used to quantify particle transport over a 10-day period. Particle mixing was quantified using the maximum penetration depth of tracers (MPD), particle diffusive coefficients (Db), and non-local transport coefficients (r). Non-local coefficients (reflecting centimeter scale transport steps) ranged from 0.4 to 15 yr−1, and were not correlated across sites with any measured biological (biomass, biovolume) or environmental parameters (temperature, grain size, organic matter). Maximum penetration depths (MPD) averaged ~10.7 cm (6.5–14.5 cm), and were similar to the global average bioturbation depth inferred from short-lived radiochemical tracers. MPD was also not correlated with measures of size (individual biomass), but increased with grain size and decreased with temperature. Biodiffusion (Db) correlated inversely with individual biomass (size) and directly with temperature over the environmental range (Q10 ~ 1.7; 5–21 °C). The transport data were comparable in magnitude to rates reported for localized H. diversicolor populations of similar size, and confirmed some but not all correlations between sediment reworking and biological and environmental variables found in previous studies. The results imply that measures of particle reworking activities of a species from a single location can be generally extrapolated to different populations at similar conditions.
Published: 2021

19. Thermal plasticity and sensitivity to insecticides in populations of an invasive beetle:Cyfluthrin increases vulnerability to extreme temperature

Author: Martin Holmstrup, Sapho-Lou Marti, Julie Engell Dahl, David Renault, Claudia Wiegand, Hervé Colinet, Université de Rennes (UR), Ecosystèmes, biodiversité, évolution [Rennes] (ECOBIO), Université de Rennes (UR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR), Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Centre National de la Recherche Scientifique (CNRS), Aarhus University [Aarhus], Institut Universitaire de France (IUF), Ministère de l'Education nationale, de l’Enseignement supérieur et de la Recherche (M.E.N.E.S.R.), This study was supported by France-Agri-Mer (Research grant ‘Teneblimit’), and by the International Research Project (IRP) ‘Phenomic responses of invertebrates to changing environments and multiple stress (PRICES) funded by InEE-CNRS., Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES), Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université de Rennes 1 (UR1), and Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)
Subjects: Insecticides, Environmental Engineering, Hot Temperature, Health, Toxicology and Mutagenesis, heat spike, 0208 environmental biotechnology, Alphitobius diaperinus, Population, 02 engineering and technology, 010501 environmental sciences, Cyfluthrin, 01 natural sciences, Extreme temperature, Toxicology, chemistry.chemical_compound, Extreme weather, Heat spike, Nitriles, Pyrethrins, Environmental Chemistry, Animals, education, Extreme Cold, 0105 earth and related environmental sciences, education.field_of_study, Pyrethroid, tolerance, Thermal variation, biology, pyrethroid, [SDV.BA]Life Sciences [q-bio]/Animal biology, Public Health, Environmental and Occupational Health, Temperature, General Medicine, General Chemistry, Pesticide, biology.organism_classification, Pollution, 020801 environmental engineering, Coleoptera, chemistry, 13. Climate action, insect, [SDE.BE]Environmental Sciences/Biodiversity and Ecology, Insect, Tolerance, thermal variation
Abstract: International audience; Climate change increases average temperatures and the occurrence of extreme weather events, in turn accentuating the risk of organism exposure to temperature stress. When thermal conditions become stressful, the sensitivity of insects toward insecticides can be exacerbated. Likewise, exposure of insects to insecticides can subsequently influence their ability to handle stressful temperatures. Here, we investigated the effects of constant temperature and daily heat spikes, in presence/absence of insecticide treatment (cyfluthrin), on the condition (impairment of mobility) and thermal tolerance to cold (-6 °C) and heat (42.5 °C) of the terrestrial beetle Alphitobius diaperinus. The responses of insects from four populations (three farm-collected populations, one laboratory population) to different durations of extreme temperature exposure were compared. The results showed that the laboratory population was generally more sensitive to extreme cold and heat temperatures, with less than 50% of adults recovering after an exposure at -6 or +42.5 °C for 3h. Significant differences in the level of thermal tolerance were also found among insects from poultry farms. Cyfluthrin exposure incurred detrimental effects to insects’ condition in all but one population. For two out of the four populations, mobility impairment was increased when adults were exposed to daily heat spikes (6 h per day at 38 °C) and cyfluthrin simultaneously, compared to cyfluthrin exposure at constant temperatures; yet, no significant interaction between the two stressors was found. Finally, using one farm collected population, effects of pre-exposure to cyfluthrin on extreme temperature tolerance provided another example of the toxicant-induced climate sensitivity in insects.
Published: 2021

20. Once upon a time in the far south: Influence of local drivers and functional traits on plant invasion in the harsh sub‐Antarctic islands

Author: Jonathan Lenoir, Jonas J. Lembrechts, David Renault, Remi Joly, Manuele Bazzichetto, Marta Carboni, François Massol, Ecosystèmes, biodiversité, évolution [Rennes] (ECOBIO), Université de Rennes (UR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR), Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Centre National de la Recherche Scientifique (CNRS), Centre d’Infection et d’Immunité de Lille - INSERM U 1019 - UMR 9017 - UMR 8204 (CIIL), Institut Pasteur de Lille, Réseau International des Instituts Pasteur (RIIP)-Réseau International des Instituts Pasteur (RIIP)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Université de Lille-Centre Hospitalier Régional Universitaire [Lille] (CHRU Lille)-Centre National de la Recherche Scientifique (CNRS), Università degli Studi Roma Tre = Roma Tre University (ROMA TRE), Ecologie et Dynamique des Systèmes Anthropisés - UMR CNRS 7058 (EDYSAN), Université de Picardie Jules Verne (UPJV)-Centre National de la Recherche Scientifique (CNRS), University of Antwerp (UA), Institut Universitaire de France (IUF), Ministère de l'Education nationale, de l’Enseignement supérieur et de la Recherche (M.E.N.E.S.R.), French Polar Institute Paul-Emile Victor 'IPEV 136 Subanteco', Institut Universitaire de France (IUF) ' ENVIE', Strategie d'attractivite durable (SAD) Region Bretagne 'INFLICT' [17050], ASICS project [ANR-20-EBI5-0004], Research Foundation Flanders (FWO) FWO [OZ7828], Rita Levi-Montalcini grant, ANR-20-EBI5-0004,ASICS,ASsessing and mitigating the effects of climate change and biological Invasions on the spatial redistribution of biodiversity in Cold environmentS(2020), Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES), Centre National de la Recherche Scientifique (CNRS)-Centre Hospitalier Régional Universitaire [Lille] (CHRU Lille)-Université de Lille-Institut National de la Santé et de la Recherche Médicale (INSERM)-Institut Pasteur de Lille, Réseau International des Instituts Pasteur (RIIP)-Réseau International des Instituts Pasteur (RIIP), Università degli Studi Roma Tre, Bazzichetto, Manuele, Massol, Françoi, Carboni, Marta, Lenoir, Jonathan, Lembrechts, Jonas J., Joly, Rémi, and Renault, David
Subjects: 0106 biological sciences, Perennial plant, [SDE.MCG]Environmental Sciences/Global Changes, Juncaceae, Plant Science, Alien, [SDV.BID]Life Sciences [q-bio]/Biodiversity, 010603 evolutionary biology, 01 natural sciences, alien plants, anthropogenic propagule pressure, invasiveness, plant invasion, species distribution models, sub-Antarctic islands, topoclimate, Poaceae, Biology, [SDV.EE]Life Sciences [q-bio]/Ecology, environment, geography, geography.geographical_feature_category, Ecology, biology, 010604 marine biology & hydrobiology, Propagule pressure, 15. Life on land, biology.organism_classification, Chemistry, Taxon, Archipelago, Identification (biology), [SDE.BE]Environmental Sciences/Biodiversity and Ecology
Abstract: AimHere, we aim to: (i) investigate the local effect of environmental and human-related factors on alien plant invasion in sub-Antarctic islands; (ii) explore the relationship between alien species features and their dependence on anthropogenic propagule pressure; and (iii) unravel key traits conferring invasiveness in the sub-Antarctic.LocationPossession Island, Crozet archipelago (French sub-Antarctic islands).TaxonNon-native vascular plants (Poaceae, Caryophyllaceae, Juncaceae).MethodsSingle-species distribution models were used to explore the effect of high-resolution topoclimatic and human-related variables on the occurrence of six of the most aggressive alien plants colonizing French sub-Antarctic islands. Furthermore, the interaction between alien species traits and their response to anthropogenic propagule pressure was analysed by means of a multi-species distribution model. This allowed identifying the features of species that were associated to low dependence on human-assisted introductions, and were thus potentially more invasive.ResultsWe observed two main invasion patterns: low-spread species strongly dependent on anthropogenic propagule pressure and high-spread species limited mainly by harsh climatic conditions. Differences in invasiveness across species mostly related to their residence time, life history and plant height, with older introductions, perennial and low-stature species being more invasive.Main conclusionsThe availability of high-resolution data improved our understanding of the role of environmental and human-related factors in driving alien species distribution on sub-Antarctic islands. At the same time, the identification of alien species features conferring invasiveness may help anticipating future problematic invasions.
Published: 2021

21. Heterogenous Impact of Water Warming on Exotic and Native Submerged and Emergent Plants in Outdoor Mesocosms

Author: Morgane Gillard, Gabrielle Thiébaut, Jean-Pierre Caudal, Carole Deleu, Ecosystèmes, biodiversité, évolution [Rennes] (ECOBIO), Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES), Institut de Génétique, Environnement et Protection des Plantes (IGEPP), Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)-AGROCAMPUS OUEST, Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Bourse MENRT, Ministère de l'Enseignement Supérieur et de la Recherche, Université de Rennes (UR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR), Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Centre National de la Recherche Scientifique (CNRS), Université de Rennes (UR)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-INSTITUT AGRO Agrocampus Ouest, and Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)
Subjects: 0106 biological sciences, species biogeographic origin, Plant Science, 010603 evolutionary biology, 01 natural sciences, phenology, Article, Mesocosm, Aquatic plant, Ecosystem, Ecology, Evolution, Behavior and Systematics, Biomass (ecology), macrophyte growth form, Ecology, biology, Phenology, 010604 marine biology & hydrobiology, Ludwigia hexapetala, Global warming, Botany, 15. Life on land, biology.organism_classification, biological traits, Macrophyte, climate change, 13. Climate action, QK1-989, Environmental science, [SDE.BE]Environmental Sciences/Biodiversity and Ecology
Abstract: Some aquatic plants present high biomass production with serious consequences on ecosystem functioning. Such mass development can be favored by environmental factors. Temperature increases are expected to modify individual species responses that could shape future communities. We explored the impact of rising water temperature on the growth, phenology, and metabolism of six macrophytes belonging to two biogeographic origins (exotic, native) and two growth forms (submerged, emergent). From June to October, they were exposed to ambient temperatures and a 3 °C warming in outdoor mesocosms. Percent cover and canopy height were favored by warmer water for the exotic emergent Ludwigia hexapetala. Warming did not modify total final biomass for any of the species but led to a decrease in total soluble sugars for all, possibly indicating changes in carbon allocation. Three emergent species presented lower flavonol and anthocyanin contents under increased temperatures, suggesting lower investment in defense mechanisms and mitigation of the stress generated by autumn temperatures. Finally, the 3 °C warming extended and shortened flowering period for L. hexapetala and Myosotis scorpioides, respectively. The changes generated by increased temperature in outdoor conditions were heterogeneous and varied depending on species but not on species biogeographic origin or growth form. Results suggest that climate warming could favor the invasiveness of L. hexapetala and impact the structure and composition of aquatic plants communities.
Published: 2021

22. Deer exclusion unveils abiotic filtering in forest understory plant assemblages

Author: Christophe Baltzinger, Jean-Louis Martin, Simon Chollet, Morgane Maillard, Ecosystèmes, biodiversité, évolution [Rennes] (ECOBIO), Université de Rennes (UR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR), Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Centre National de la Recherche Scientifique (CNRS), Ecosystèmes forestiers (UR EFNO), Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Centre d’Ecologie Fonctionnelle et Evolutive (CEFE), Université Paul-Valéry - Montpellier 3 (UPVM)-École Pratique des Hautes Études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [France-Sud])-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut Agro - Montpellier SupAgro, Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro), This work was supported by the British Columbia South Moresby Forest Replacement Account [contract # SMFRA99DQC-002, SMFRA Project 24.2], the Forest Renewal British Columbia [PA97335-BRE] and by the Agence Nationale de la Recherche [ANR BLAN 171801 Bambi], the French Ministry of Foreign affairs and the France Canada Research Fund (Grant to Morgane Maillard). Cemagref funded CB field missions in 2005 and 2009. The Research Group on Introduced Species (RGIS), The Canadian Wildlife Service (CWS), the Laskeek Bay Conservation Society (LBCS), Gwaii Haanas National Park Reserve, National Marine Conservation Area Reserve, and Haida Heritage Site, and the BC Ministry of Forests, Lands and Natural Resource Operation (Haida Gwaii Natural Resource District) provided logistical support., ANR-10-BLAN-1718,BAMBI,Bases comportementales de l'Ajustement à Moins de BIodiversité : oublier la peur, un mécanisme pour s'adapter à la surexploitation de son milieu?(2010), Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES), Université Paul-Valéry - Montpellier 3 (UPVM)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [France-Sud])-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), and Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)
Subjects: 0106 biological sciences, Sitka black-tailed deer, Beta diversity, Plant Science, Forests, Odocoileus, 010603 evolutionary biology, 01 natural sciences, Trees, biotic interactions, Forest ecology, Animals, Ecosystem, Abiotic component, bryophyte, Herbivore, biology, Ecology, Deer, 010604 marine biology & hydrobiology, abiotic factors, assembly rules, vascular plant, Plant community, Original Articles, Understory, Plants, 15. Life on land, biology.organism_classification, 13. Climate action, Exclosure, overbrowsing, [SDE.BE]Environmental Sciences/Biodiversity and Ecology, legacy effects
Abstract: Background and Aims The role of deer (family Cervidae) in ecosystem functioning has traditionally been neglected by forest ecologists due to the animal’s scarcity in most parts of the northern hemisphere. However, the dramatic rebound in deer populations throughout the 20th century has brought deer browsing to the forefront of forest ecological questioning. Today there is ample evidence that deer affect tree regeneration, understorey plant and animal diversity, and even litter decomposition. However, the mechanisms underlying the effects of deer on forest ecosystems remain unclear. Among others, the relative role of abiotic factors versus biotic interactions (e.g. herbivory) in shaping plant assemblages remains largely unknown. Methods We used a large-scale experiment with exclosures distributed along abiotic gradients to understand the role of black-tailed deer (Odocoileus hemionus sitchensis) on the forest understorey on the Haida Gwaii archipelago (western Canada), a unique context where most of the key ecological effects of deer presence have already been intensively studied. Key Results Our results demonstrate that 20 years of deer exclusion resulted in a clear increase in vascular plant richness, diversity and cover, and caused a decline in bryophyte cover. Exclusion also unveiled abiotic (i.e. soil water availability and fertility) filtering of plant assemblages that would otherwise have been masked by the impact of abundant deer populations. However, deer exclusion did not lead to an increase in beta diversity, probably because some remnant species had a competitive advantage to regrow after decades of over browsing. Conclusions We demonstrated that long-term herbivory by deer can be a dominant factor structuring understorey plant communities that overwhelms abiotic factors. However, while exclosures prove useful to assess the overall effects of large herbivores, the results from our studies at broader scales on the Haida Gwaii archipelago suggest that exclosure experiments should be used cautiously when inferring the mechanisms at work.
Published: 2021

23. Fifty million years of beetle evolution along the Antarctic Polar Front

Author: Helena P. Baird, Steven L. Chown, Philippe Vernon, Katherine L. Moon, Duane D. McKenna, Richard Adams, Seunggwan Shin, Maurice Hullé, Rolf G. Oberprieler, Monash University [Clayton], School of Biological Sciences [Edinburgh], University of Edinburgh, University of Memphis (U of M), Seoul National University [Seoul] (SNU), Commonwealth Scientific and Industrial Research Organisation [Canberra] (CSIRO), Institut de Génétique, Environnement et Protection des Plantes (IGEPP), Université de Rennes (UR)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-INSTITUT AGRO Agrocampus Ouest, Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro), Ecosystèmes, biodiversité, évolution [Rennes] (ECOBIO), Université de Rennes (UR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR), Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Centre National de la Recherche Scientifique (CNRS), School of Biological Sciences [Clayton], Florida Atlantic University [Boca Raton], This work received support from École Polytechnique Fédérale de Lausanne, Swiss Polar Institute, and Ferring Pharmaceuticals through the Antarctic Circumnavigation Expedition. D.D.M. received funding from the US NSF (DEB1355169)., Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)-AGROCAMPUS OUEST, Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université de Rennes 1 (UR1), and Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)
Subjects: 0106 biological sciences, Time Factors, Evolution, Insular biogeography, Fauna, Biodiversity, Antarctic Regions, 010603 evolutionary biology, 01 natural sciences, 03 medical and health sciences, Paleoclimatology, paleoclimate, Animals, 14. Life underwater, Phylogeny, 030304 developmental biology, Cell Nucleus, Polar front, Principal Component Analysis, 0303 health sciences, Multidisciplinary, biology, island biogeography, Ecology, herbivory, Weevil, Biological Sciences, 15. Life on land, biology.organism_classification, species radiation, Biological Evolution, Coleoptera, Phylogeography, Genes, Mitochondrial, Antarctica, [SDE.BE]Environmental Sciences/Biodiversity and Ecology, Global cooling
Abstract: Significance The Antarctic environment is famously inhospitable to most terrestrial biodiversity, traditionally viewed as a driver of species extinction. Combining population- and species-level molecular data, we show that beetles on islands along the Antarctic Polar Front diversified in response to major climatic events over the last 50 Ma in surprising synchrony with the region’s marine organisms. Unique algae- and moss-feeding habits enabled beetles to capitalize on cooling conditions, which resulted in a decline in flowering plants—the typical hosts for beetles elsewhere. Antarctica’s cooling paleoclimate thus fostered the diversification of both terrestrial and marine life. Climatically driven evolutionary processes since the Miocene may underpin much of the region’s diversity, are still ongoing, and should be further investigated among Antarctic biota., Global cooling and glacial–interglacial cycles since Antarctica’s isolation have been responsible for the diversification of the region’s marine fauna. By contrast, these same Earth system processes are thought to have played little role terrestrially, other than driving widespread extinctions. Here, we show that on islands along the Antarctic Polar Front, paleoclimatic processes have been key to diversification of one of the world’s most geographically isolated and unique groups of herbivorous beetles—Ectemnorhinini weevils. Combining phylogenomic, phylogenetic, and phylogeographic approaches, we demonstrate that these weevils colonized the sub-Antarctic islands from Africa at least 50 Ma ago and repeatedly dispersed among them. As the climate cooled from the mid-Miocene, diversification of the beetles accelerated, resulting in two species-rich clades. One of these clades specialized to feed on cryptogams, typical of the polar habitats that came to prevail under Miocene conditions yet remarkable as a food source for any beetle. This clade’s most unusual representative is a marine weevil currently undergoing further speciation. The other clade retained the more common weevil habit of feeding on angiosperms, which likely survived glaciation in isolated refugia. Diversification of Ectemnorhinini weevils occurred in synchrony with many other Antarctic radiations, including penguins and notothenioid fishes, and coincided with major environmental changes. Our results thus indicate that geo-climatically driven diversification has progressed similarly for Antarctic marine and terrestrial organisms since the Miocene, potentially constituting a general biodiversity paradigm that should be sought broadly for the region’s taxa.
Published: 2021

24. Occurrence of a single-species cyanobacterial bloom in a lake in Cyprus: monitoring and treatment with hydrogen peroxide-releasing granules

Author: Dariusz Dziga, Assaf Sukenik, Ekaterina Chernova, Angelos Sofokleous, Luc Brient, Eleni Keliri, Christia Paraskeva, Maria G. Antoniou, Cyprus University of Technology, Kinneret Limnological Laboratory, Israel Oceanographic and Limnological Research - IOLR (ISRAEL), Uniwersytet Jagielloński w Krakowie = Jagiellonian University (UJ), Russian Academy of Sciences [Moscow] (RAS), Ecosystèmes, biodiversité, évolution [Rennes] (ECOBIO), Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES), This work funded by the Cyprus Seeds organization under the project 'Novel physico-chemical oxidation processes for mitigating toxic cyanobacterial blooming'. The project was also supported by the CYANOS project funded from the Research Innovation Foundation (BILATERAL/FRANCE/1116/0006) that covered traveling expenses to and from the University of Rennes in France for performing phytoplankton characterization of St. George Lake water samples., Israel Oceanographic and Limnological Research (IOLR), Université de Rennes (UR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR), and Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Centre National de la Recherche Scientifique (CNRS)
Subjects: 0106 biological sciences, Cyanobacteria, Monitoring, Microcystin, 01 natural sciences, Peroxide, Algal bloom, 03 medical and health sciences, chemistry.chemical_compound, Merismopedia, Merismopedia sp, Hydrogen peroxide, chemistry.chemical_classification, 0303 health sciences, biology, 030306 microbiology, 010604 marine biology & hydrobiology, Nutrients, Cyanotoxin, biology.organism_classification, Pollution, 6. Clean water, Treatment, Water quality, chemistry, Granules, Environmental chemistry, Chemical Sciences, [SDE.BE]Environmental Sciences/Biodiversity and Ecology, Eutrophication, Natural Sciences
Abstract: BackgroundExcess loads of nutrients finding their way into waterbodies can cause rapid and excessive growth of phytoplankton species and lead to the formation of cyanobacterial harmful algal blooms (cyano-HABs). Toxic cyanobacteria produce a broad range of bioactive metabolites, some of which are known as cyanotoxins. These metabolites can negatively impact the ecosystem, and human and animal health, thus their presence needs to be closely monitored and mitigated. This study aimed to monitor St. George Lake (Athalassa National Forest Park, Cyprus) for its water quality characteristics, and initiate a new methodology to control the bloom that occurred in the lake during summer 2019, by comparing hydrogen peroxide treatment with novel metallic peroxide granules as source of hydrogen peroxide.ResultsLake monitoring showed that pH, salinity, total dissolved solids and conductivity varied throughout the year, and nutrients concentration was high, indicating a eutrophic lake. The cyanobacteriumMerismopediasp. bloomed in the lake between June and September 2019, comprising up to 99% of the phytoplankton biovolume. The presence of microcystin synthase encoding gene (mcyB, mcyE) was documented, however microcystins were not detected by tandem mass spectroscopy. Treatment with liquid hydrogen peroxide in concentrations 1 to 5 mg L−1had no effect on the phycocyanin fluorescence (Ft) and quantum yield of PSII (Fv/Fm) indicating an ineffective treatment for the denseMerismopediabloom (1 million cells mL−1 ± 20%). Metallic peroxide granules tested for their H2O2releasing capacity in St. George Lake water, showing that CaO2released higher H2O2concentration and therefore have better mitigation efficiency than MgO2granules.ConclusionThe present study highlights the importance of monitoring several water parameters to conclude on the different actions to be taken to limit eutrophication in the catchment area. The findings demonstrated that testing for the presence of genes involved in cyanotoxin production may not be sufficient to follow cyanotoxins in the water, therefore it should be accompanied with analytical confirmation. Treatment experiments indicated that slow release of H2O2from peroxide granules may be an alternative to liquid hydrogen peroxide when applied in appropriate doses, but further investigation is needed before it is applied at the field.Graphic Abstract
Published: 2021

25. Molecular analysis of the replication functions of the bifidobacterial conjugative megaplasmid pMP7017

Author: Maxence J. B. Bourin, Mary O'Connell-Motherway, Philip Kelleher, Rebecca L Dineen, Christophe Penno, Douwe van Sinderen, University College Cork (UCC), Ecosystèmes, biodiversité, évolution [Rennes] (ECOBIO), Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES), Université de Rennes (UR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR), and Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Centre National de la Recherche Scientifique (CNRS)
Subjects: Bifidobacterium longum, Autonomously replicating sequence, Genetic Vectors, ved/biology.organism_classification_rank.species, Bioengineering, Biology, Applied Microbiology and Biotechnology, Biochemistry, 03 medical and health sciences, Plasmid, fluids and secretions, Shuttle vector, Escherichia coli, Coding region, Gene, Research Articles, 030304 developmental biology, Genetics, 0303 health sciences, Bifidobacterium breve, 030306 microbiology, ved/biology, food and beverages, biology.organism_classification, 3. Good health, Bifidobacterium, Heterologous expression, [SDE.BE]Environmental Sciences/Biodiversity and Ecology, TP248.13-248.65, Plasmids, Research Article, Biotechnology
Abstract: Summary pMP7017 is a conjugative megaplasmid isolated from the gut commensal Bifidobacterium breve JCM7017 and was shown to encode two putative replicases, designated here as RepA and RepB. In the current work, RepB was identified as the pMP7017 replicative initiator, as the repB gene, and its surrounding region was shown to be sufficient to allow autonomous replication in two bifidobacterial species, B. breve and Bifidobacterium longum subsp. longum. RepB was shown to bind to repeat sequence downstream of its coding sequence and this region was determined to be essential for efficient replication. Based on our results, we hypothesize that pMP7017 is an iteron‐regulated plasmid (IRP) under strict auto‐regulatory control. Recombinantly produced and purified RepB was determined to exist as a dimer in solution, differing from replicases of other IRPs, which exist as a mix of dimers and monomers. Furthermore, a stable low‐copy Bifidobacterium‐E. coli shuttle vector, pRD1.3, was created which can be employed for cloning and expression of large genes, as was demonstrated by the cloning and heterologous expression of the 5.1 kb apuB gene encoding the extracellular amylopullulanase from B. breve UCC2003 into B. longum subsp. longum NCIMB8809., In the current work, RepB was identified as the replicative initiator of the 190 kb conjugative megaplasmid pMP7017 from gut commensal Bifidobacterium breve JCM7017. RepB was shown to bind to repeat sequences downstream of its coding sequence and this region was determined to be essential for efficient replication. In addition, a stable low‐copy Bifidobacterium‐E. coli shuttle vector, pRD1.3, was created which can be employed for cloning and expression of large genes.
Published: 2021

26. An assessment of the endemic spermatophytes, pteridophytes and bryophytes of the French Overseas Territories: towards a better conservation outlook

Author: Claudine Ah-Peng, Guillaume Léotard, Joël Jérémie, Vincent Boullet, Vanessa Invernon, Marc Lebouvier, Sandrine Tercerie, Guillaume Viscardi, Louis Thouvenot, Odile Poncy, Germinal Rouhan, Serge Muller, Carlos Rodrigues-Vaz, Olivier Gargominy, Jean-Yves Meyer, Marc Pignal, Elisabeth Lavocat Bernard, Hervé Chevillotte, Simon Veron, Jérôme Munzinger, Elise Lebreton, Sébastien Leblond, Stephan Robbert Gradstein, Institut de Systématique, Evolution, Biodiversité (ISYEB ), Muséum national d'Histoire naturelle (MNHN)-École Pratique des Hautes Études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), Peuplements végétaux et bioagresseurs en milieu tropical (UMR PVBMT), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut de Recherche pour le Développement (IRD)-Université de La Réunion (UR)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Conservatoire Botanique National de Mascarin, Université de Bretagne Occidentale - UFR Sciences et Techniques (UBO UFR ST), Université de Brest (UBO), Délégation Régionale à la Recherche et à la Technologie en Polynésie Française (DRRT PF), Délégation Régionale à la Recherche et à la Technologie (DRRT), Patrimoine naturel (PatriNat), Muséum national d'Histoire naturelle (MNHN)-Centre National de la Recherche Scientifique (CNRS)-Office français de la biodiversité (OFB), Ecosystèmes, biodiversité, évolution [Rennes] (ECOBIO), Université de Rennes (UR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR), Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Centre National de la Recherche Scientifique (CNRS), Botanique et Modélisation de l'Architecture des Plantes et des Végétations (UMR AMAP), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [France-Sud])-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Muséum national d'Histoire naturelle (MNHN), Conservatoire Botanique de Martinique (CBMq), We thank the Office Français de la Biodiversité (French Agency of Biodiversity) and the Ministère des Outre-mer (French Ministry of Overseas Territories) for funding and supporting this project. Claudine Ah-Peng is grateful for financial support from DEAL Réunion (agreement n°2020-264) to increase knowledge on the endemic bryophytes of Réunion. We are grateful to RECOLNAT national Research Infrastructure (ANR-11-INBS-0004) and especially all contributors to the 'Herbonautes' citizen science program for databasing more than 12,000 Paris herbarium specimens., ANR-11-INBS-0004,E-RECOLNAT,Valorisation de 350 ans de collections d'histoire naturelle : une plateforme numérique(2011), Muséum national d'Histoire naturelle (MNHN)-École pratique des hautes études (EPHE), Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université de Rennes 1 (UR1), and Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)
Subjects: 0106 biological sciences, Systematics, Flora, Range (biology), Biodiversity, Rubiaceae, [SDV.BID]Life Sciences [q-bio]/Biodiversity, [SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics, Phylogenetics and taxonomy, 010603 evolutionary biology, 01 natural sciences, Pteridophytes, Endemism, Orchidaceae, Ecology, Evolution, Behavior and Systematics, Nature and Landscape Conservation, Islands, Ecology, biology, 010604 marine biology & hydrobiology, [SDV.BID.EVO]Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE], Bryophytes, 15. Life on land, biology.organism_classification, French Overseas Territories, Checklist, Herbarium, Geography, Threatened species, [SDE.BE]Environmental Sciences/Biodiversity and Ecology
Abstract: International audience; A broad range of climatic and biogeographical conditions are represented in the French Overseas Territories, from sub-polar to equatorial, resulting in a high diversity of endemic species. We mobilized data from herbaria, floras, checklists, literature, the expertise of botanists and plant ecologists to compile the most complete dataset on endemic vascular plants and bryophytes in the 15 French Overseas Territories. To date, 3748 spermatophytes (seed plants), 244 pteridophytes (ferns and lycophytes) and 448 bryophytes are strictly endemic to the overseas territories. New Caledonia, French Polynesia and Réunion harbour the highest numbers of strictly endemic species, yet French Guiana and the French Antilles harbour high numbers of regional endemic species due to their proximity with other territories. The endemic flora of these territories is highly threatened. In particular, 51% of strictly endemic spermatophytes are threatened and many species at risk belong to Rubiaceae and Orchidaceae families. Around 82% and 69% of strict and regional endemic spermatophytes and pteridophytes are found in the Paris herbaria. Only 34% of endemic bryophytes have their label information fully databased so that their total number in Paris herbaria is not known. Databasing the remaining specimens in the collection will greatly enhance future research and conservation projects. To facilitate the use of the information we compiled, we provide a publicly searchable dataset of the checklist. This study not only provides a picture of the flora of French overseas territories; it also identifies gaps in knowledge on which future research efforts in systematics, ecology and conservation could focus.
Published: 2021

27. Divergent metabolomic profiles of cold-exposed mature and immature females of tropical versus temperate Drosophila species

Author: Pablo E. Schilman, Hervé Colinet, Esteban Hasson, Lucas E. Kreiman, David Renault, Julián Mensch, Universidad de Buenos Aires [Buenos Aires] (UBA), Ecosystèmes, biodiversité, évolution [Rennes] (ECOBIO), Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES), This work was financially supported by grants from Agencia Nacional de Promoción Científica y Tecnológica (PICT-2018-03716, PICT-2018-02810) and University of Buenos Aires (to J.M. and P.E.S)., Université de Rennes (UR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR), and Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Centre National de la Recherche Scientifique (CNRS)
Subjects: 0106 biological sciences, 0301 basic medicine, Glycerol, Proline, Physiology, Period (gene), media_common.quotation_subject, Acclimatization, Zoology, Cold tolerance, 010603 evolutionary biology, 01 natural sciences, Biochemistry, Oogenesis, Gluconates, Gas Chromatography-Mass Spectrometry, 03 medical and health sciences, Lactones, Metabolomics, Sex Factors, Species Specificity, Temperate climate, Animals, Molecular Biology, Drosophila, media_common, Metabolic responses, Reproductive dormancy, Principal Component Analysis, Alanine, biology, Reproduction, Cold adaptation, Ovarian maturity, biology.organism_classification, Adaptation, Physiological, Fruit flies, Cold Temperature, 030104 developmental biology, [SDE]Environmental Sciences, Dormancy, Osmoprotectant, Female, Seasons, Energy Metabolism
Abstract: International audience; Temperate species, contrary to their tropical counterparts, are exposed not only to thermally variable environments with low temperatures but also to long winters. Different selective pressures may have driven divergent physiological adaptations in closely related species with different biogeographic origins. To survive unfavourable winter conditions, Drosophila species in temperate areas generally undergo a period of reproductive dormancy, associated with a cold-induced cessation of oogenesis and metabolic reorganization. This work aims to compare cold tolerance and metabolic signatures of cold-exposed females exhibiting different reproductive maturity status (mature and immature females) of four Drosophila species from tropical vs. temperate origins. We expected that the capacity for delayed reproduction of immature females could result in the redirection of the energy-related metabolites to be utilized for surviving the cold season. To do so, we studied an array of 45 metabolites using quantitative target GC–MS profiling. Reproductively immature females of temperate species showed the lower CTmin and the faster chill coma recovery time (i.e. the most cold-tolerant group). Principal component analysis captured differences across species, but also between reproductive maturity states. Notably, temperate species exhibited significantly higher levels of glucose, alanine, and gluconolactone than tropical ones. As proline and glycerol showed higher abundances in immature females of temperate species compared to the levels exhibited by the rest of the groups, we reasoned that glucose and alanine could serve as intermediates in the synthesis of these compatible solutes. All in all, our findings suggest that cold-exposed females of temperate species accumulate energy-related and protective metabolites (e.g. glycerol and proline) while delaying reproduction, and that these metabolites are relevant to cold tolerance even at modest concentrations.
Published: 2021

28. Synergistic effects of temperature and plant quality, on development time, size and lipid in Eccritotarsus eichhorniae

Author: Loulou Albittar, Mohannad Ismail, Margot Brooks, Joan van Baaren, Rhodes University, Grahamstown, Université Catholique de Louvain = Catholic University of Louvain (UCL), Ecosystèmes, biodiversité, évolution [Rennes] (ECOBIO), Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES), Rhodes University, South African Research Chairs Initiative of the Department of Science and Technology, National Research Foundation of South AfricaNational Research Foundation - South Africa, Université de Rennes (UR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR), and Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Centre National de la Recherche Scientifique (CNRS)
Subjects: 0106 biological sciences, biology, business.industry, fungi, interaction, biology.organism_classification, 010603 evolutionary biology, 01 natural sciences, absolute energy demand, size, Biotechnology, [SDV.BA.ZI]Life Sciences [q-bio]/Animal biology/Invertebrate Zoology, 010602 entomology, Insect Science, mirid, Biological dispersal, Plant quality, business, dispersal, Agronomy and Crop Science, Eccritotarsus, [SDV.EE.IEO]Life Sciences [q-bio]/Ecology, environment/Symbiosis
Abstract: International audience; Body size is an important biotic factor in evolutionary ecology, since it affects all aspects of insect physiology, life history and, consequently, fitness in ectothermic insects and how species adapt with their environment. It has been linked to temperature, with lower temperatures resulting in larger size. In this study, we tested the combined impact of temperature and plant quality on the body size, and development time from egg to adult of Eccritotarsus eichhorniae (Hemiptera: Miridae), an herbivorous insect used as a biological control agent against the invasive aquatic weed, water hyacinth Eichhornia crassipes (Pontederiaceae). We quantified insect size in individuals exposed to three temperatures (20, 25 and 30 degrees C) combined with three qualities of host plant (high, medium and low) by calculating development time and measuring four traits: tibia length, forewing length, dry body mass and lipid content, and we also determined the wing loading index. The development time, dry body mass and lipid content decreased linearly with increasing temperature and decreasing plant quality. The decrease in size was the greatest when high temperature interacted with low plant quality. Smaller individuals had proportionately less lipid content. Wing loading decreased significantly with lower quality of host plant, resulting in individuals likely to have theoretically higher flight ability. The results support the temperature-size rule (TSR) and that plant quality could influence the relationship between development time and the TSR. Results also provide novel evidence for a possible food quality-size rule for both sexes.
Published: 2021

29. Climatic niche shift of an invasive shrub (Ulex europaeus): a global scale comparison in native and introduced regions

Author: Fawziah Limbada, Anne Atlan, Mathias Christina, Ecologie fonctionnelle et biogéochimie des sols et des agro-écosystèmes (UMR Eco&Sols), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut de Recherche pour le Développement (IRD)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Interactions Sol Plante Atmosphère (UMR ISPA), Ecole Nationale Supérieure des Sciences Agronomiques de Bordeaux-Aquitaine (Bordeaux Sciences Agro)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Ecosystèmes, biodiversité, évolution [Rennes] (ECOBIO), Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES), ANR-14-CE03-0007-01, Agence Nationale de la Recherche, Institut National de la Recherche Agronomique, Centre Nationale de la Recherche Scientifique, ANR-14-CE03-0007,MARIS,Gestion et analyse de risque d'une plante invasive (Ulex europaeus (L.)): apports de la modélisation de la niche socio-écologique et de la dynamique de population de l'espèce le long d'un large gradient climatique.(2014), Institut National de la Recherche Agronomique (INRA)-Institut de Recherche pour le Développement (IRD)-Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR)-Centre National de la Recherche Scientifique (CNRS), ANR-14-CE03-0007-01,MARIS,MAnagement and RISk analysis of an Invading plant species (Ulex europaeus): how socio-ecological niche with population dynamics modelling under a wide range of climates can help, Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut de Recherche pour le Développement (IRD)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut Agro - Montpellier SupAgro, Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro), Université de Rennes (UR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR), and Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Centre National de la Recherche Scientifique (CNRS)
Subjects: 0106 biological sciences, Plant invasion, Écologie, Distribution géographique, Range (biology), ved/biology.organism_classification_rank.species, Niche, Species distribution, [SDV.BID]Life Sciences [q-bio]/Biodiversity, Plant Science, H60 - Mauvaises herbes et désherbage, 010603 evolutionary biology, 01 natural sciences, Shrub, Invasive species, Établissement de la plante, [SDV.BV]Life Sciences [q-bio]/Vegetal Biology, F70 - Taxonomie végétale et phyto-géographie, ecological niche, species distribution models, Ecology, Evolution, Behavior and Systematics, Ecology, biology, ved/biology, 010604 marine biology & hydrobiology, Global change, [SDV.BV.BOT]Life Sciences [q-bio]/Vegetal Biology/Botanics, 15. Life on land, F40 - Ecologie végétale, biology.organism_classification, Ulex europaeus, Geography, 13. Climate action, Aptitude à coloniser, [SDV.EE.BIO]Life Sciences [q-bio]/Ecology, environment/Bioclimatology, [SDE.BE]Environmental Sciences/Biodiversity and Ecology, Scale (map), Espèce envahissante, niche shift, invasibility
Abstract: International audience; Aims. Invasive species, which recently expanded, may help understand how climatic niche can shift at the time scale of the current global change. Here, we address the climatic niche shift of an invasive shrub (common gorse, Ulex europaeus) at the world and regional scales to assess how it could contribute to increasing invasibility. Methods. Based on a 28,187 occurrences database, we used a combination of 9 species distribution models (SDM) to assess regional climatic niche from both the native range (Western Europe) and the introduced range in different parts of the world (North-West America, South America, North Europe, Australia and New Zealand). Important Findings. Despite being restricted to annual mean temperature between 4 and 22 °C, as well as annual precipitation higher than 300 mm / yr, the range of bioclimatic conditions suitable for gorse was very large. Based on a native vs introduced SDM comparison, we highlighted a niche expansion in North-West America, South America and to a lesser degree in Australia, while a niche displacement was assessed in North Europe. These niche changes induced an increase in potential occupied areas by gorse by 49, 111, 202 and 283% in Australia, North Europe, North-West America and South America, respectively. On the contrary, we found no evidence of niche change in New Zealand, which presents similar climatic condition to the native environment (Western Europe). This study highlights how niche expansion and displacement of gorse might increase invasibility at regional scale. The change in gorse niche toward new climatic conditions may result from adaptive plasticity or genetic evolution and may explain why it has such a high level of invasibility. Taking into account the possibility of a niche shift is crucial to improve invasive plants management and control.; Objectifs : Les espèces envahissantes peuvent aider à comprendre comment la niche climatique peut évoluer à une échelle temporelle de l'ordre de celle du changement global en cours. La prise en compte de cette possibilité d'un changement de niche est cruciale pour améliorer la gestion et le contrôle des plantes envahissantes. Ici, nous abordons le changement de niche climatique d'un arbuste envahissant (l'ajonc Ulex europaeus) à l'échelle mondiale et régionale.Méthodes : Sur la base d'une base de données de 28 187 occurrences, nous avons utilisé une combinaison de 9 modèles de distribution d'espèces (SDM) pour évaluer la niche climatique régionale de la zone native native (Europe occidentale) et des zones introduites (Amérique du Nord-Ouest, Amérique du Sud, Europe du Nord, Australie et Nouvelle-Zélande).Principaux résultats : La gamme des conditions bioclimatiques adaptées aux ajoncs est très large, bien qu'elle soit limitée par une température annuelle moyenne comprise entre 4 et 22 °C, et des précipitations annuelles supérieures à 300 mm an. Nous avons mis en évidence plusieurs changemenbts de niche : une expansion de niche en Amérique du Nord-Ouest, en Amérique du Sud et dans une moindre mesure en Australie, un déplacement de niche en Europe du Nord. Ces changements de niche ont entraîné une augmentation de 49, 111, 202 et 283 % des zones potentiellement colonisables par l'ajonc en Australie, Europe du Nord, Amérique du Nord et Amérique du Sud, respectivement. Nous n'avons trouvé aucun indice de changement de niche en Nouvelle-Zélande, pays qui présente des conditions climatiques similaires à celles de la zone native. Le changement de niche des ajoncs vers de nouvelles conditions climatiques peut résulter de la plasticité adaptative ou de l'évolution génétique de l'espèce, et contribue à expliquer pourquoi elle est si invasive.
Published: 2019

30. Exploring the drivers of vascular plant richness at very fine spatial scale in sub-Mediterranean limestone grasslands (Central Apennines, Italy)

Author: Leone Davide Mancini, Manuele Bazzichetto, Goffredo Filibeck, Laura Cancellieri, Marta Gaia Sperandii, Francesco Rossini, Università degli studi della Tuscia [Viterbo], Università degli Studi Roma Tre = Roma Tre University (ROMA TRE), Ecosystèmes, biodiversité, évolution [Rennes] (ECOBIO), Université de Rennes (UR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR), Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Centre National de la Recherche Scientifique (CNRS), Università degli Studi Roma Tre, Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES), Filibeck, G., Sperandii, M. G., Bazzichetto, M., Mancini, L. D., Rossini, F., and Cancellieri, L.
Subjects: 0106 biological sciences, Mediterranean climate, Vascular plant, Diversity metrics, Biodiversity, 010603 evolutionary biology, 01 natural sciences, Grassland, Dry grassland, Ecology, Evolution, Behavior and Systematics, Nature and Landscape Conservation, Species–area relationship, geography.geographical_feature_category, Ecology, biology, Topographical gradients, 010604 marine biology & hydrobiology, Edaphic, 15. Life on land, biology.organism_classification, Multi-scale approach, Geography, Dry grasslands, Habitat, Diversity metric, Soil propertie, Spatial ecology, Soil properties, Species richness, Physical geography, [SDE.BE]Environmental Sciences/Biodiversity and Ecology
Abstract: International audience; Secondary dry grasslands in Europe can host high levels of vascular plant richness at small spatial scales. However, in Southern Europe their biodiversity patterns are largely unexplored. In this work, we aim at: (i) estimating plant species richness patterns at very fine scales in montane dry grasslands, on limestone bedrock, in Abruzzo Lazio and Molise National Park (Central Apennines, Italy); (ii) assessing the most important physical and edaphic drivers of biodiversity patterns at multiple plot sizes. We used randomly placed nested-plot series where we measured alpha-diversity at three different plot sizes (1 m2, 0.1 m2 and 0.01 m2) and within-plot beta-diversity (as expressed by the slope of the species-area curve across plot sizes). Variable selection was performed by means of Random Forests. Relationships between selected variables and diversity measures were then assessed using Regression Trees, Linear and Generalized Linear Models. Overall, results pointed to topographically-controlled edaphic factors (soil pH and silt fraction) as the main drivers positively influencing alpha-diversity at all spatial scales, with a positive effect of rock cover and slope inclination at smaller spatial grains. Beta-diversity was positively influenced by rock cover. We suggest that high-pH, steep and/or rocky sites feature higher species richness because they lack competitive grass species. Our results are in agreement with previous works underlining the importance of less productive habitats for the conservation of secondary grassland biodiversity.
Published: 2019

31. Does intraspecific variability matter in ecological risk assessment? Investigation of genotypic variations in three macrophyte species exposed to copper

Author: Elisabeth M. Gross, Camille Larue, Arnaud Elger, Eva Roubeau Dumont, Hervé Gryta, Sophie Lorber, Elise Billoir, Laboratoire Ecologie Fonctionnelle et Environnement (ECOLAB), Université Toulouse III - Paul Sabatier (UT3), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Observatoire Midi-Pyrénées (OMP), Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées, Xénobiotiques, Ecole Nationale Vétérinaire de Toulouse (ENVT), Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut National de la Recherche Agronomique (INRA), Evolution et Diversité Biologique (EDB), Institut de Recherche pour le Développement (IRD)-Université Toulouse III - Paul Sabatier (UT3), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS), Laboratoire Interdisciplinaire des Environnements Continentaux (LIEC), Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Observatoire Midi-Pyrénées (OMP), Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Centre National de la Recherche Scientifique (CNRS), Biosynthèse & Toxicité des Mycotoxines (ToxAlim-BioToMyc), ToxAlim (ToxAlim), Université Fédérale Toulouse Midi-Pyrénées-Ecole Nationale Vétérinaire de Toulouse (ENVT), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Ecole d'Ingénieurs de Purpan (INPT - EI Purpan), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut National de la Recherche Agronomique (INRA)-Université Toulouse III - Paul Sabatier (UT3), Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Université Toulouse III - Paul Sabatier (UT3), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées, Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Observatoire Terre et Environnement de Lorraine (OTELo), Institut national des sciences de l'Univers (INSU - CNRS)-Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS), EC2CO program from the National Institute of Sciences of the Universe (CNRS/INSU), French Ministry of research and higher education, French Laboratory of Excellence project TULIP [ANR-10-LABX-41, ANR-11-IDEX-0002-02], Investissement d'Avenir grant of the Agence Nationale de la Recherche (CEBA) [ANR-10-LABX-25-01], Laboratoire Ecologie Fonctionnelle et Environnement (LEFE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université de Toulouse (UT)-Observatoire Midi-Pyrénées (OMP), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France -Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France -Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT), Institut National de la Recherche Agronomique (INRA)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université de Toulouse (UT)-Ecole Nationale Vétérinaire de Toulouse (ENVT), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT)-Ecole d'Ingénieurs de Purpan (INPT - EI Purpan), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut National de la Recherche Agronomique (INRA)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université de Toulouse (UT), and Université de Toulouse (UT)-Université de Toulouse (UT)-Centre National de la Recherche Scientifique (CNRS)
Subjects: freshwater macrophyte, copper toxicity, Genotype, Health, Toxicology and Mutagenesis, 010501 environmental sciences, Aquatic Science, Risk Assessment, 01 natural sciences, Intraspecific competition, Magnoliopsida, 03 medical and health sciences, Species Specificity, Aquatic plant, Relative growth rate, Araceae, interspecific variation, Biomass, Ecosystem, ComputingMilieux_MISCELLANEOUS, 030304 developmental biology, 0105 earth and related environmental sciences, 0303 health sciences, Biomass (ecology), biology, Myriophyllum, Ceratophyllum demersum, Interspecific competition, 15. Life on land, biology.organism_classification, Macrophyte, Agronomy, 13. Climate action, [SDE]Environmental Sciences, [SDE.BE]Environmental Sciences/Biodiversity and Ecology, Copper, Water Pollutants, Chemical, Environmental Monitoring
Abstract: International audience; To limit anthropogenic impact on ecosystems, regulations have been implemented along with global awareness that human activities are harmful to the environment. Ecological risk assessment (ERA) is the main procedure which allows to assess potential impacts of stressors on the environment as a result of human activities. ERA is typically implemented through different steps of laboratory testing. The approaches taken for ERA evolve along with scientific knowledge, to improve predictions on ecological risks for ecosystems. We here address the importance of intraspecific variability as a potential source of error in the laboratory evaluation of pollutants. To answer this question, three aquatic macrophyte species with different life-history traits but with their leaves directly in contact with the water were chosen; Lemna minor and Myriophyllum spicatum, two OECD model species, and Ceratophyllum demersum. For each species, three or four genotypes were exposed to 7-8 copper concentrations (up to 1.9 mg/L, 2 mg/L or 36 mg/L for C. demersum, L. minor and M. spicatum, respectively). To assess species sensitivity, growth-related endpoints such as Relative Growth Rate (RGR), based either on biomass production or on length/frond production, and chlorophyll fluorescence F-v/F-m, were measured. For each endpoint, the effective concentration 50% (EC50) was calculated. Almost all endpoints were affected by Cu exposure, except F v /F n , of M. spicatum, and resulted in significant differences among genotypes for Cu sensitivity. Genotypes of L. minor exhibited up to 35% of variation in EC50 values based on F-v/F-m, showing differential sensivity among genotypes. Significant differences in EC50 values were found for RGR based on length for M. spicatum, with up to 72% of variation. Finally, C. demersum demonstrated significant sensitivity differences among genotypes with up to 78% variation for EC50 based on length. Overall, interspecific variation was higher than intraspecific variation, and explained 77% of the variation found among genotypes for RGR based on biomass, and 99% of the variation found for F-v/F-m. Our results highlight that depending on the endpoint, sensitivity can vary greatly within a species, and that pollutant- and species-specific endpoints should be considered in ERA.
Published: 2019

32. Health indicators and contaminant levels of a critically endangered species in the Gironde estuary, the European sturgeon

Author: Marie-Laure Acolas, Pierre-Yves Gourves, Bénédicte Morin, Séverine Jean, Maud Pierre, Blandine Davail, Hélène Budzinski, Guillemine Daffe, Christelle Clérandeau, Pierre Labadie, Romaric Le Barh, Patrice Gonzalez, Magalie Baudrimont, Laurent Peluhet, E. Rochard, Karyn Le Menach, Mathilde Lauzent, Jérôme Cachot, Annie Perrault, Université de Bordeaux (UB), Centre National de la Recherche Scientifique (CNRS), Ecosystèmes aquatiques et changements globaux (UR EABX), Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA), UMR 5805 Environnements et Paléoenvironnements Océaniques et Continentaux (EPOC), Observatoire aquitain des sciences de l'univers (OASU), Université Sciences et Technologies - Bordeaux 1-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université Sciences et Technologies - Bordeaux 1-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-École pratique des hautes études (EPHE)-Centre National de la Recherche Scientifique (CNRS), Laboratoire d'Ecophysiologie et Ecotoxicologie des Systèmes Aquatiques (LEESA), Université Sciences et Technologies - Bordeaux 1-Institut Français du Pétrole-Centre National de la Recherche Scientifique (CNRS), Laboratoire Ecologie Fonctionnelle et Environnement (ECOLAB), Université Toulouse III - Paul Sabatier (UT3), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Observatoire Midi-Pyrénées (OMP), Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées, Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Université Sciences et Technologies - Bordeaux 1-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université Sciences et Technologies - Bordeaux 1-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Centre National de la Recherche Scientifique (CNRS), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Observatoire Midi-Pyrénées (OMP), Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Centre National de la Recherche Scientifique (CNRS), Region Nouvelle-Aquitaine, IRSTEA, Adour-Garonne water agency, Gironde general council in 2014, ANR-13-CESA-0018,SturTOP,Vulnérabilité et adaptabilité de la dernière population d'esturgeon européen (Acipenser sturio) aux facteurs de stress environnementaux : température, oxygène et polluants.(2013), Environnements et Paléoenvironnements OCéaniques (EPOC), Université Sciences et Technologies - Bordeaux 1 (UB)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université Sciences et Technologies - Bordeaux 1 (UB)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-École Pratique des Hautes Études (EPHE), Université Sciences et Technologies - Bordeaux 1 (UB)-Institut Français du Pétrole-Centre National de la Recherche Scientifique (CNRS), Laboratoire Ecologie Fonctionnelle et Environnement (LEFE), Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université de Toulouse (UT)-Observatoire Midi-Pyrénées (OMP), Institut de Recherche pour le Développement (IRD)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France -Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France -Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), and Université de Toulouse (UT)
Subjects: Sturgeon, Health, Toxicology and Mutagenesis, Population, Endangered species, Zoology, Context (language use), Sex steroid, 010501 environmental sciences, Biology, 01 natural sciences, Animals, Environmental Chemistry, Ecotoxicology, 14. Life underwater, education, ComputingMilieux_MISCELLANEOUS, 0105 earth and related environmental sciences, geography, education.field_of_study, geography.geographical_feature_category, Estuary, Endangered Species, Fishes, General Medicine, biology.organism_classification, Pollution, Hatchery, Gene transcription, [SDE]Environmental Sciences, Acipenser sturio, France, Genotoxicity, Estuaries, Inorganic and organic contaminants, Water Pollutants, Chemical
Abstract: The European sturgeon, Acipenser sturio, is a highly endangered species that almost disappeared in the last decades. Thanks to yearly restocking of the population, this species is still found in the Gironde estuary (France), where juveniles grow during several years before leaving to the ocean. The aims of this study were to evaluate the pressure exerted on these fish by known organic and inorganic contaminants during their stay at the Gironde estuary, and to get information on the fish’s health in this context. Monthly captures over the year 2014 provided 87 fish from the cohorts 2012 and 2013 mainly, and from cohorts 2008, 2009, and 2011, all fish born in hatchery. We report the very first analyses of contaminant levels and of biological markers measured in the blood of these fish. Low inorganic contamination was found, composed of seven metals mainly Zn (
Published: 2019

33. Increased tolerance to organic xenobiotics following recent allopolyploidy in Spartina (Poaceae)

Author: Armand Cavé-Radet, Armel Salmon, Oscar Lima, Abdelhak El Amrani, Malika L. Aïnouche, Ecosystèmes, biodiversité, évolution [Rennes] (ECOBIO), Université de Rennes (UR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR), Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Centre National de la Recherche Scientifique (CNRS), This work was supported by the Ministère de l’Enseignement Supérieur et de la Recherche, by the CNRS, and the Observatoire des Sciences et de l’Univers de Rennes (OSUR). The authors would like to knowledge Olivier Catrice with his assistance for the achievement of confocal microscopy analysis. We also thank two anonymous reviewers for their constructive, Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université de Rennes 1 (UR1), and Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)
Subjects: Genome doubling, 0106 biological sciences, 0301 basic medicine, abiotic stress, Plant Science, Biology, Poaceae, Spartina alterniflora, 01 natural sciences, Genome, Xenobiotics, Polyploidy, Transcriptome, 03 medical and health sciences, chemistry.chemical_compound, PAHs, Genetics, Gene, 2. Zero hunger, Spartina, Abiotic stress, GSTs, Sequence Analysis, DNA, General Medicine, [SDV.BV.BOT]Life Sciences [q-bio]/Vegetal Biology/Botanics, 15. Life on land, biology.organism_classification, Phytoremediation, 030104 developmental biology, chemistry, 13. Climate action, [SDE.BE]Environmental Sciences/Biodiversity and Ecology, Xenobiotic, Agronomy and Crop Science, Genome, Plant, 010606 plant biology & botany
Abstract: International audience; Genome doubling or polyploidy is a widespread phenomenon in plants where it has important evolutionary consequences affecting the species distribution and ecology. PAHs are ubiquitous organic pollutants, which represent a major environmental concern. Recent data showed that tolerance to organic xenobiotics involve specific signaling pathways, and detoxifying gene sets referred as ‘the xenome’. However, no data are available about how polyploidy impacts tolerance to organic xenobiotics. In the present paper, we investigated PAH tolerance following allopolyploidization in Spartina alterniflora, S. maritima and their derived allopolyploid species S. anglica. We performed comparative analyses of cellular compartmentalization, photosynthetic indices, and oxidative stress markers under phenanthrene-induced stress, and found that S. anglica exhibit increased tolerance compared to its parents. Based on 52 genes potentially involved in phenanthrene detoxification previously identified in A. thaliana, we investigated the Spartina xenome using genomic and transcriptomic available resources. Subsequently, we focused on GSTs, a ubiquitous enzymes class involved in organic xenobiotic detoxification. We examined expression profiles of selected genes by RT-qPCR, and revealed various patterns of parental expression alteration in the allopolyploid. The impacts of allopolyploidization on phenanthrene-induced stress and their potential ecological implications are discussed. The neo-allopolyploid S. anglica appears as a potential candidate for phytoremediation in PAH-polluted marshes.
Published: 2019

34. Chemically mediated interactions betweenMicrocystisandPlanktothrix: impact on their growth, morphology and metabolic profiles

Author: Zouher Amzil, Florence Mondeguer, Sébastien Reubrecht, Manoella Sibat, Philipp Hess, Enora Briand, Myriam Bormans, Ecosystèmes, biodiversité, évolution [Rennes] (ECOBIO), Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES), Institut Français de Recherche pour l'Exploitation de la Mer - Atlantique (IFREMER Atlantique), Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER), FP7 People: Marie‐Curie Actions. Grant Number: 301244‐CYANOMIC, European Project: 301244,EC:FP7:PEOPLE,FP7-PEOPLE-2011-IOF,CYANOMIC(2012), Université de Rennes (UR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR), and Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Centre National de la Recherche Scientifique (CNRS)
Subjects: Cyanobacteria, Microcystis, Metabolite, Fresh Water, Biology, Microbiology, Planktothrix, 03 medical and health sciences, chemistry.chemical_compound, Microcystis aeruginosa, Ecology, Evolution, Behavior and Systematics, Allelopathy, 030304 developmental biology, 0303 health sciences, 030306 microbiology, 15. Life on land, biology.organism_classification, [SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology, Trichome, chemistry, Biochemistry, Metabolome, Intracellular, [SDV.EE.IEO]Life Sciences [q-bio]/Ecology, environment/Symbiosis
Abstract: International audience; Freshwater cyanobacteria are known for their ability to produce bioactive compounds, some of which have been described as allelochemicals. Using a combined approach of co-cultures and analyses of metabolic profiles, we investigated chemically mediated interactions between two cyanobacterial strains, Microcystis aeruginosa PCC7806 and Planktothrix agardhii PCC7805. More precisely, we evaluated changes in growth, morphology and metabolite production and release by both interacting species. Co-culture of Microcystis with Planktothrix resulted in a reduction of the growth of Planktothrix together with a decrease of its trichome size and alterations in the morphology of its cells. The production of intracellular compounds by Planktothrix showed a slight decrease between mono and co-culture conditions. Concerning Microcystis, the number of intracellular compounds was higher under co-culture condition than under monoculture. Overall, Microcystis produced a lower number of intracellular compounds under monoculture than Planktothrix, and a higher number of intracellular compounds than Planktothrix under co-culture condition. Our investigation did not allow us to identify specifically the compounds causing the observed physiological and morphological changes of Planktothrix cells. However, altogether, these results suggest that co-culture induces specific compounds as a response by Microcystis to the presence of Planktothrix. Further studies should be undertaken for identification of such potential allelochemicals. This article is protected by copyright. All rights reserved.
Published: 2019

35. Nutritive value and physical and chemical deterrents of forage grass litter explain feeding performances of two soil macrodetritivores

Author: Cécile Trân, Antoine Lecerf, Eric Chauvet, Claire Jouany, Mickaël Hedde, Christophe Laplanche, Benjamin Pey, Johanne Nahmani, P. Cruz, Laboratoire Sols et Environnement (LSE), Institut National de la Recherche Agronomique (INRA)-Université de Lorraine (UL), AGroécologie, Innovations, teRritoires (AGIR), Institut National de la Recherche Agronomique (INRA)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées, PESSAC, Institut National de la Recherche Agronomique (INRA), Laboratoire Ecologie Fonctionnelle et Environnement (ECOLAB), Université Toulouse III - Paul Sabatier (UT3), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Observatoire Midi-Pyrénées (OMP), Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées, Centre d’Ecologie Fonctionnelle et Evolutive (CEFE), Institut de Recherche pour le Développement (IRD [France-Sud])-Centre National de la Recherche Scientifique (CNRS)-École pratique des hautes études (EPHE)-Université de Montpellier (UM)-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro)-Institut National de la Recherche Agronomique (INRA)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-Université Paul-Valéry - Montpellier 3 (UM3), Laboratoire Dynamique de la Biodiversité (LADYBIO), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS), Ecologie fonctionnelle et biogéochimie des sols et des agro-écosystèmes (UMR Eco&Sols), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut de Recherche pour le Développement (IRD)-Institut National de la Recherche Agronomique (INRA)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Observatoire Midi-Pyrénées (OMP), Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Centre National de la Recherche Scientifique (CNRS), Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)-École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-Institut National de la Recherche Agronomique (INRA)-Université Paul-Valéry - Montpellier 3 (UPVM)-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut de Recherche pour le Développement (IRD [France-Sud]), Centre de Coopération Internationale en Recherche Agronomique - CIRAD (FRANCE), Centre National de la Recherche Scientifique - CNRS (FRANCE), Institut National Polytechnique de Toulouse - Toulouse INP (FRANCE), Institut National de la Recherche Agronomique - INRA (FRANCE), Institut de Recherche pour le Développement - IRD (FRANCE), Université Toulouse III - Paul Sabatier - UT3 (FRANCE), Université de Toulouse (UT)-Université de Toulouse (UT), Laboratoire Ecologie Fonctionnelle et Environnement (LEFE), Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université de Toulouse (UT)-Observatoire Midi-Pyrénées (OMP), Institut de Recherche pour le Développement (IRD)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France -Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France -Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT), Université Paul-Valéry - Montpellier 3 (UPVM)-Institut National de la Recherche Agronomique (INRA)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-École Pratique des Hautes Études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [France-Sud])-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), Université de Toulouse (UT)-Université de Toulouse (UT)-Centre National de la Recherche Scientifique (CNRS), and Institut National Polytechnique de Toulouse - INPT (FRANCE)
Subjects: 0106 biological sciences, Litter (animal), Consumption, Perennial plant, forage grass litter, Biodiversité et Ecologie, Forage grass litte, Soil Science, 01 natural sciences, Glomeris marginata, ComputingMilieux_MISCELLANEOUS, Holcus lanatus, Bromus erectus, 2. Zero hunger, Armadillidium vulgare, assimilation, Ecology, biology, 04 agricultural and veterinary sciences, 15. Life on land, biology.organism_classification, Agricultural and Biological Sciences (miscellaneous), Functional trait, Agronomy, Assimilation, Brachypodium pinnatum, 040103 agronomy & agriculture, 0401 agriculture, forestry, and fisheries, Soil macrodetritivore, [SDE.BE]Environmental Sciences/Biodiversity and Ecology, Festuca rubra, 010606 plant biology & botany
Abstract: International audience; Millipedes (Diplopoda) and terrestrial isopods (Isopoda) may play a significant role in soil decomposition. The present study aimed to contribute to the general understanding of feeding performances of macrodetritivores consuming grass litter by answering two questions. Q1: Are grass litter traits indicating nutritive value (i.e. chemical) and traits indicating feeding deterrents (i.e. mainly physical but not necessarily) both necessary to explain individual feeding performances of soil invertebrates consuming grass litter? Q2: Do grass physical traits indicating physical deterrents (e.g. WHC for mechanical aspects) provide more than, less than or the same amount of information about invertebrate individual performances as grass chemical traits indicating mainly chemical but also physical deterrents (e.g. lignin content directly for digestibility and indirectly for mechanical aspects)? We thus designed a laboratory experiment to assess individual feeding performances of two common macrodetritivores (Armadillidium vulgare (Latreille, 1804) and Glomeris marginata (Villiers, 1789)) in four monospecific treatments of litter from perennial forage grasses (Brachypodium pinnatum P. Beauv., Bromus erectus Huds., Festuca rubra L. and Holcus lanatus L.). A. vulgare feeding performances were correlated with nutritive values (litter N and P contents) and plant mechanical aspects (LDMC: leaf dry matter content). G. marginata performances were correlated with chemical deterrents (cellulose and lignin contents). Thus, (Q1) for grass litters, both traits indicating nutritive value (e.g. N, P) and feeding deterrents (e.g. LDMC, lignin content) are necessary to explain macroinvertebrates feeding performances. We also demonstrated the results depend on the invertebrate species considered. Also, (Q2) chemical deterrents may influence feeding performances of G. marginata the most, while physical deterrents related to mechanical aspects may influence those of A. vulgare the most. Our study indicates that using grass chemical and physical traits that indicate both nutritive value and feeding deterrents can help explain feeding performances of macrodetritivores consuming grass litter.
Published: 2019

36. Dynamics of the seagrass Zostera noltei in a shallow Mediterranean lagoon exposed to chemical contamination and other stressors

Author: Noël J. Diepens, Patrick Grillas, Yves Chérain, Anne Probst, Olivier Boutron, Jérôme Silvestre, Evelyne Buffan-Dubau, Diane Espel, Eric Coulet, Arnaud Elger, Laboratoire Ecologie Fonctionnelle et Environnement (ECOLAB), Université Toulouse III - Paul Sabatier (UT3), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Observatoire Midi-Pyrénées (OMP), Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Centre National de la Recherche Scientifique (CNRS), Department of Environmental Sciences [Wageningen], Wageningen University and Research [Wageningen] (WUR), Institut de recherche de la Tour du Valat, National Nature Reserve of Camargue, National Society for Nature Protection (SNPN), Laboratoire Ecologie Fonctionnelle et Environnement (LEFE), Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université de Toulouse (UT)-Observatoire Midi-Pyrénées (OMP), Institut de Recherche pour le Développement (IRD)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France -Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France -Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), and Université de Toulouse (UT)
Subjects: 0106 biological sciences, Pollution, Aquatic Ecology and Water Quality Management, 010504 meteorology & atmospheric sciences, [SDE.MCG]Environmental Sciences/Global Changes, media_common.quotation_subject, Population, Aquatic Science, Oceanography, 01 natural sciences, [SDV.EE.ECO]Life Sciences [q-bio]/Ecology, environment/Ecosystems, [SDU.STU.GC]Sciences of the Universe [physics]/Earth Sciences/Geochemistry, Aquatic plant, 14. Life underwater, [SDU.STU.HY]Sciences of the Universe [physics]/Earth Sciences/Hydrology, [SDU.ENVI]Sciences of the Universe [physics]/Continental interfaces, environment, education, Multiple stressors, 0105 earth and related environmental sciences, media_common, education.field_of_study, Zostera noltei, Seagrass dynamics, biology, [SDE.IE]Environmental Sciences/Environmental Engineering, Ecology, 010604 marine biology & hydrobiology, Chemical contaminants, Contamination, Aquatische Ecologie en Waterkwaliteitsbeheer, biology.organism_classification, Coastal lagoon, 6. Clean water, Macrophyte, Seagrass, 13. Climate action, Environmental science, [SDV.TOX.ECO]Life Sciences [q-bio]/Toxicology/Ecotoxicology, [SDE.BE]Environmental Sciences/Biodiversity and Ecology, Eutrophication
Abstract: International audience; Seagrass decline due to a variety of stressors has been observed worldwide. In the shallow Vaccarès lagoon, Camargue, France, the dominant macrophyte species, Zostera noltei, has suffered two major declines since 1996. The first decline was well explained by salinity and turbidity variations, while the second one could not be explained by these parameters. Other stressors such as chemical contamination, eutrophication or temperature increase could be explanatory variables for this most recent decline. The aim of our study was to understand, via scientific monitoring from 2011 to 2015, the influence of chemical contamination and its possible interactions with other biological and environmental pressures, on seagrass physiology and population dynamics in the Vaccarès lagoon. Multi-contamination by organic contaminants and trace metals was detected in the water and sediments, and their concentrations often exceeded environmental standards, particularly where seagrass regression was observed. Spatial variations in biological, environmental and chemical parameters in the lagoon were investigated by co-inertia analysis, which revealed significant relationships between environmental data, more particularly between contaminants, seagrass dynamics indices and biomarkers. Seagrass dynamics indices were negatively correlated with the concentrations of some herbicides in water (2,4-MCPA and bentazon) and with trace metals in sediments (arsenic). Rhizome starch contents in winter were negatively correlated with those herbicides and with several metals (arsenic, zinc, copper) in water and/or sediments. These results suggest that environmental contamination may play a role in seagrass decline. However, complementary investigations, such as monitoring over longer periods and additional toxicity tests, are required to address the causal link between contamination and seagrass decline.
Published: 2019

37. New insights from multidimensional trait space responses to competition in two clonal plant species

Author: Anne-Kristel Bittebiere, Cendrine Mony, Hugo Saiz, Laboratoire d'Ecologie des Hydrosystèmes Naturels et Anthropisés (LEHNA), Centre National de la Recherche Scientifique (CNRS)-Institut National de la Recherche Agronomique (INRA)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-École Nationale des Travaux Publics de l'État (ENTPE), Ecosystèmes, biodiversité, évolution [Rennes] (ECOBIO), Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR)-Centre National de la Recherche Scientifique (CNRS), Universidad Rey Juan Carlos [Madrid] (URJC), ANR‐08‐SYSC‐012, Agence Nationale de la Recherche, 647038, FP7 Ideas: European Research Council, Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-École Nationale des Travaux Publics de l'État (ENTPE)-Centre National de la Recherche Scientifique (CNRS), Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES), Université de Rennes (UR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR), Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Centre National de la Recherche Scientifique (CNRS), and ANR-08-SYSC-0012,MODECOL,Utilisation de la modélisation pour améliorer les services écologiques associés aux systèmes prairiaux(2008)
Subjects: 0106 biological sciences, 2. Zero hunger, Ecology, Niche, Niche differentiation, plant–plant interactions, Interspecific competition, 15. Life on land, Biology, biology.organism_classification, 010603 evolutionary biology, 01 natural sciences, clonal growth strategy, Intraspecific competition, hypervolume, Colonisation, intra‐ and interspecific competition, Trait, Elytrigia, functional traits, Species richness, [SDE.BE]Environmental Sciences/Biodiversity and Ecology, intraspecific variability, Ecology, Evolution, Behavior and Systematics, 010606 plant biology & botany
Abstract: Trait intraspecific variability determines community dynamics and species coexistence. In response to competition, plants can display intraspecific variability to enhance their competitive ability or stabilise their niche differences with competitors. This response is multidimensional because it involves changes along different functional axes and inevitable trade‐offs between traits. Here, we transposed the recent concept of the multidimensional trait space to the analysis of intraspecific plant response to competition. We specifically tested the following: (a) in the absence of competitors, the plant multidimensional trait space will be packed towards strategies promoting plant colonisation; and (b) with competitors, the plant multidimensional trait space will be directed towards competition with its size and shaping characteristics dependent on competitor species richness. We studied trait intraspecific variability of two clonal species, Brachypodium pinnatum (L.) P. Beauv. and Elytrigia repens (L.) Gould, in response to competition. We analysed plant response in the absence of competitors and in competition. Competition treatments included intraspecific and interspecific experimental mixtures with increasing species richness. For each target species and each treatment, we built an hypervolume based on six traits involved in the three‐dimensional competition (i.e., ramet and connection traits). We measured these hypervolumes for their size, similarity and the contribution of traits in their shaping. In the absence of competitors and for both species, we demonstrated a multidimensional trait space packing towards a colonisation strategy. Under competition, the multidimensional trait spaces of the two target species were the widest at the extremes of the richness gradient, that is, intraspecific and interspecific high richness competition treatments. High intraspecific variability either promoted niche differentiation from individuals of similar species or reflected the large range of competitive responses deployed when plants were faced with many different competitor identities. The multidimensional response process was based on fine adjustments of various traits depending on the surrounding neighbourhood composition and more specifically, on the competitor functional similarity with the target species. This study emphasises the multidimensionality of species competitive response, and also underlines the so far neglected importance of competitor species richness for trait intraspecific variability and subsequently community assembly. A plain language summary is available for this article.
Published: 2018

38. The multilevel antibiotic-induced perturbations to biological systems: Early-life exposure induces long-lasting damages to muscle structure and mitochondrial metabolism in flies

Author: Hesham A. Yousef, David Renault, Amr A. Mohamed, Ecosystèmes, biodiversité, évolution [Rennes] (ECOBIO), Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES), Cairo University, Faculty of Science, Cairo University, Institut Universitaire de France, Université de Rennes (UR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR), and Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Centre National de la Recherche Scientifique (CNRS)
Subjects: 0301 basic medicine, Insecta, medicine.drug_class, Health, Toxicology and Mutagenesis, Citric Acid Cycle, 030106 microbiology, Antibiotics, Population, Oxidative phosphorylation, Biology, Mitochondrion, Toxicology, Microbiology, 03 medical and health sciences, medicine, Animals, Metabolomics, Chrysomya albiceps, education, Mode of action, education.field_of_study, Eukaryote, Diptera, Muscles, fungi, Energy metabolism, General Medicine, Metabolism, biology.organism_classification, Pollution, Anti-Bacterial Agents, Mitochondria, Mitochondria, Muscle, Insect flight muscles, Citric acid cycle, 030104 developmental biology, 13. Climate action, [SDV.TOX.ECO]Life Sciences [q-bio]/Toxicology/Ecotoxicology, [SDE.BE]Environmental Sciences/Biodiversity and Ecology, Mitochondrial dysfunction, Oxidation-Reduction
Abstract: International audience; Antibiotics have been increasingly used over the past decades for human medicine, food-animal agriculture, aquaculture, and plant production. A significant part of the active molecules of antibiotics can be released into the environment, in turn affecting ecosystem functioning and biogeochemical processes. At lower organizational scales, these substances affect bacterial symbionts of insects, with negative consequences on growth and development of juveniles, and population dynamics. Yet, the multiple alterations of cellular physiology and metabolic processes have remained insufficiently explored in insects. We evaluated the effects of five antibiotics with different mode of action, i.e. ampicillin, cefradine, chloramphenicol, cycloheximide, and tetracycline, on the survival and ultrastructural organization of the flight muscles of newly emerged blow flies Chrysomya albiceps. Then, we examined the effects of different concentrations of antibiotics on mitochondrial protein content, efficiency of oxidative phosphorylation, and activity of transaminases (Glutamate oxaloacetate transaminase and glutamate pyruvate transaminase) and described the cellular metabolic perturbations of flies treated with antibiotics. All antibiotics affected the survival of the insects and decreased the total mitochondrial protein content in a dose-dependent manner. Ultrastructural organization of flight muscles in treated flies differs dramatically compared to the control groups and severe pathological damages/structures disorganization of mitochondria appeared. The activities of mitochondrial transaminases significantly increased with increased antibiotic concentrations. The oxidation rate of pyruvate + proline from isolated mitochondria of the flight muscles of 1-day-old flies was significantly reduced at high doses of antibiotics. In parallel, the level of several metabolites, including TCA cycle intermediates, was reduced in antibiotics-treated flies. Overall, antibiotics provoked a system-wide alteration of the structure and physiology of flight muscles of the blow fly Ch. albiceps, and may have fitness consequences at the organism level. Environmental antibiotic pollution is likely to have unwanted cascading ecological effects of insect population dynamics and community structure.
Published: 2018

39. Fate of petroleum hydrocarbons in bioturbated pristine sediments from Caleta Valdés (Patagonia Argentina): An ex situ bioassay

Author: Jose Luis Esteves, Franck Gilbert, Philippe Cuny, J. Sturla Lompré, M. Franco, M.G. Commendatore, M. Sepúlveda, A. Ferrando, Cécile Militon, Vincent Grossi, M. Nievas, Georges Stora, Consejo Nacional de Investigaciones Científicas y Técnicas [Buenos Aires] (CONICET), Universidad Tecnologica Nacional - UTN (ARGENTINA), Laboratoire de Géologie de Lyon - Terre, Planètes, Environnement [Lyon] (LGL-TPE), École normale supérieure - Lyon (ENS Lyon)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS), Institut méditerranéen d'océanologie (MIO), Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université de Toulon (UTLN), Laboratoire Ecologie Fonctionnelle et Environnement (ECOLAB), Université Toulouse III - Paul Sabatier (UT3), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Observatoire Midi-Pyrénées (OMP), Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Centre National de la Recherche Scientifique (CNRS), Laboratoire de Géologie de Lyon - Terre, Planètes, Environnement (LGL-TPE), École normale supérieure de Lyon (ENS de Lyon)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut national des sciences de l'Univers (INSU - CNRS)-Université Jean Monnet - Saint-Étienne (UJM)-Centre National de la Recherche Scientifique (CNRS), Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Toulon (UTLN)-Centre National de la Recherche Scientifique (CNRS), Laboratoire Ecologie Fonctionnelle et Environnement (LEFE), Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université de Toulouse (UT)-Observatoire Midi-Pyrénées (OMP), Institut de Recherche pour le Développement (IRD)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France -Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France -Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT), Aix-Marseille Université - AMU (FRANCE), Centre National de la Recherche Scientifique - CNRS (FRANCE), Ecole Normale Supérieure de Lyon - ENS de Lyon (FRANCE), Institut National Polytechnique de Toulouse - INPT (FRANCE), Institut de Recherche pour le Développement - IRD (FRANCE), Université Toulouse III - Paul Sabatier - UT3 (FRANCE), Université Claude Bernard-Lyon I - UCBL (FRANCE), Université du Sud Toulon-Var - USTV (FRANCE), Consejo Nacional de Investigaciones Científicas y Técnicas - CONICET (ARGENTINA), Laboratoire de géologie de Lyon : Terre, planètes et environnement - TPE (Villeurbanne, France), and Institut National Polytechnique de Toulouse - Toulouse INP (FRANCE)
Subjects: 0106 biological sciences, Geologic Sediments, Health, Toxicology and Mutagenesis, Phytane, 010501 environmental sciences, 01 natural sciences, Ciencias de la Tierra y relacionadas con el Medio Ambiente, [SPI.MAT]Engineering Sciences [physics]/Materials, purl.org/becyt/ford/1 [https], purl.org/becyt/ford/1.5 [https], chemistry.chemical_compound, Soil Pollutants, Petroleum Pollution, PETROLEUM HYDROCARBONS, Soil Microbiology, chemistry.chemical_classification, biology, [SDE.IE]Environmental Sciences/Environmental Engineering, General Medicine, Pollution, PATAGONIA, Biodegradation, Environmental, Petroleum, Hydrocarbon, Unresolved complex mixture, Environmental chemistry, Biological Assay, Bioturbation, CIENCIAS NATURALES Y EXACTAS, Chromatography, Gas, Matériaux, Otras Ciencias de la Tierra y relacionadas con el Medio Ambiente, Argentina, Ingénierie de l'environnement, 14. Life underwater, 0105 earth and related environmental sciences, Bacteria, Terpenes, 010604 marine biology & hydrobiology, Pristane, Public Health, Environmental and Occupational Health, Sediment, Petroleum hydrocarbonsEcotoxicologyBioturbationSoft sedimentsPatagonia, biology.organism_classification, ECOTOXICOLOGY, Caleta, Hydrocarbons, Petroleum hydrocarbons Ecotoxicology Bioturbation Soft sediments Patagonia, chemistry, 13. Climate action, BIOTURBATION, Environmental science, SOFT SEDIMENTS
Abstract: Petroleum can pollute pristine shorelines as a consequence of accidental spills or chronic leaks. In this study, the fate of petroleum hydrocarbons in soft pristine sediment of Caleta Valdés (Argentina) subject to ex situ simulated oil pollution was assessed. Sedimentary columns were exposed to medium and high concentrations of Escalante Crude Oil (ECO) and incubated in the laboratory during 30 days. Levels of aliphatic hydrocarbons at different depths of the sedimentary column were determined by gas chromatography. Oil penetration was limited to the first three centimetres in both treatments, and under this depth, hydrocarbons were clearly biogenic (terrestrial plants) as in the whole sedimentary column of the control assay. Bioturbation by macrobenthic infauna was strongly impacted by oil pollution which resulted in reduced sediment oxygenation and low burial of petroleum hydrocarbons. This may partly explain the limited hydrocarbon biodegradation observed, as indicated by the relatively high values of the ratios nC17/pristane, nC18/phytane, and total resolved aliphatic hydrocarbons/unresolved complex mixture. Correspondingly, at the end of the experiment the most probable number of hydrocarbon-degrading bacteria reached ~ 103 MPN g−1 dry weight. These values were lower than those found in chronically polluted coastal sediments, reflecting a low activity level of the oil-degrading community. The results highlight the low attenuation capacities of Caleta Valdés pristine sediments to recover its original characteristics in a short time period if an oil spill occurs. In this work, we present a novel and integrative tool to evaluate the fate of petroleum hydrocarbons and their potential damage on pristine sediments. Fil: Sturla Lompre, Julieta. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Centro Nacional Patagónico. Centro para el Estudio de Sistemas Marinos; Argentina Fil: Nievas El Makte, Marina Lucrecia. Universidad Tecnológica Nacional; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Centro Nacional Patagónico. Centro para el Estudio de Sistemas Marinos; Argentina Fil: Franco, M.. Universidad Tecnológica Nacional; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina Fil: Grossi, V.. Université Claude Bernard Lyon 1; Francia Fil: Ferrando, Agustina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Centro Nacional Patagónico. Centro para el Estudio de Sistemas Marinos; Argentina. Universidad Tecnológica Nacional; Argentina Fil: Militon, C.. Aix Marseille Université; Francia Fil: Gilbert, F.. Centre National de la Recherche Scientifique; Francia. Université de Toulouse; Francia Fil: Cuny, P.. Aix Marseille Université; Francia Fil: Stora, G.. Aix Marseille Université; Francia Fil: Sepúlveda, Marcela Andrea. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Centro Nacional Patagónico. Centro para el Estudio de Sistemas Marinos; Argentina Fil: Esteves, Jose Luis. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Centro Nacional Patagónico. Centro para el Estudio de Sistemas Marinos; Argentina Fil: Commendatore, Marta Graciela. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Centro Nacional Patagónico. Centro para el Estudio de Sistemas Marinos; Argentina
Published: 2018

40. Assemblages of anoxygenic phototrophic bacteria in tank bromeliads exhibit a host‐specific signature

Author: Anne‐hélène Le Jeune, Régis Céréghino, Christian Jeanthon, François Enault, Corinne Bardot, Anne-Catherine Lehours, Vincent Darbot, Antoine Vergne, Jean-François Carrias, Eric Giraud, Bruno Corbara, Isabelle Mary, Céline Leroy, Laboratoire Microorganismes : Génome et Environnement (LMGE), Centre National de la Recherche Scientifique (CNRS)-Université Clermont Auvergne (UCA), Laboratoire Ecologie Fonctionnelle et Environnement (ECOLAB), Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université Toulouse III - Paul Sabatier (UT3), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Observatoire Midi-Pyrénées (OMP), Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées, Ecologie des forêts de Guyane (UMR ECOFOG), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-AgroParisTech-Université de Guyane (UG)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Botanique et Modélisation de l'Architecture des Plantes et des Végétations (UMR AMAP), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [France-Sud])-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Adaptation et diversité en milieu marin (AD2M), Station biologique de Roscoff (SBR), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Laboratoire des symbioses tropicales et méditerranéennes (UMR LSTM), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut de Recherche pour le Développement (IRD)-Université de Montpellier (UM)-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Laboratoire Ecologie Fonctionnelle et Environnement (LEFE), Université de Toulouse (UT)-Université de Toulouse (UT)-Observatoire Midi-Pyrénées (OMP), Institut de Recherche pour le Développement (IRD)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France -Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France -Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut de Recherche pour le Développement (IRD)-Université de Montpellier (UM)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut Agro - Montpellier SupAgro, Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro), ANR-10-LABX-0025,CEBA,CEnter of the study of Biodiversity in Amazonia(2010), Université Toulouse III - Paul Sabatier (UT3), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Observatoire Midi-Pyrénées (OMP), Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Centre National de la Recherche Scientifique (CNRS), Centre National de la Recherche Scientifique (CNRS)-Observatoire Midi-Pyrénées (OMP), Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Station biologique de Roscoff (SBR), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), and Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Université de Montpellier (UM)-Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut de Recherche pour le Développement (IRD)
Subjects: Assembly rules, [SDV]Life Sciences [q-bio], Plant Science, 03 medical and health sciences, Nitrogen fixation, Dominance (ecology), Plant–bacteria interactions, Ecology, Evolution, Behavior and Systematics, Phylogenetic analyses, ComputingMilieux_MISCELLANEOUS, 030304 developmental biology, 0303 health sciences, Ecology, biology, Phototroph, 030306 microbiology, Illumina sequencing, 15. Life on land, biology.organism_classification, Anoxygenic photosynthesis, Rhodobacterales, Burkholderiales, [SDE]Environmental Sciences, Biological dispersal, Evolutionary ecology
Abstract: International audience; Anoxygenic phototrophic bacteria (APB) are a very significant metabolic functional group in the phytotelmata of tank-forming Bromeliaceae plants. Considering the close relationships existing between the bromeliad and its tank microbiota, the dominance of APB raises the question of their role in the ecology and evolution of these plants. Here, using pufM gene sequencing for taxonomic profiling, we investigated the structure of APB communities in the tanks of five bromeliad species exhibiting different habitat characteristics (i.e. physicochemical factors associated with the host), and occurring in different localities of French Guiana. We found that APB assemblages were specific to plant species and were less dependent on location or on bromeliad habitat characteristics. This convergence suggests that the identity of the bromeliad species per se is more important than habitat filtering or dispersal to control specific assembly rules for APB. The pufM OTUs were affiliated with five orders of Alpha- and Beta-proteobacteria (Rhodobacterales, Sphingomonadales, Rhizobiales, Burkholderiales and Rhodospirillales), and we assume that they may be major components of the core microbiota of plant-held waters. Our findings also revealed that up to 79% of the sequences were affiliated with APB clades possessing nitrogen-fixing genes suggesting that this metabolic capability is widespread within the APB community inhabiting tank bromeliads. We hypothesized that bromeliads may benefit nutritionally from associations with free-living APB capable to fix atmospheric nitrogen. Synthesis. Understanding the dominance of APB in tank bromeliads and determining whether a potential interplay exists between these partners is an intriguing aspect of possible mutualistic and coevolving interactions between the two existing forms of chlorophototrophy (i.e. bacteriochlorophyll-based anoxygenic and chlorophyll-based oxygenic phototrophy). In the present study, we found that bromeliad species was the main factor that explained variance in APB community composition. These findings suggest that APB and tank bromeliads may have a close, mutualistic relationship and we hypothesize according to our genomic analyses that APB may promote the bromeliad growth by provisioning essential nutrients like nitrogen.
Published: 2021

41. Impacts of Mechanical Stiffness of Bacteriophage-Loaded Hydrogels on Their Antibacterial Activity

Author: Saeid Ekrami, Jérôme F. L. Duval, Grégory Francius, Manon Cervulle, Christophe Gantzer, Xavier Bellanger, Eloïse Clément, Laboratoire de Chimie Physique et Microbiologie pour les Matériaux et l'Environnement (LCPME), Institut de Chimie du CNRS (INC)-Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS), Laboratoire Interdisciplinaire des Environnements Continentaux (LIEC), Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Observatoire Terre et Environnement de Lorraine (OTELo), Institut national des sciences de l'Univers (INSU - CNRS)-Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS), ANR-14-CE17-0005,MAGENTA,Mécanismes de transport des bactériophages optimisés pour le développement de revêtements antibactériens(2014), Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS), Institut national des sciences de l'Univers (INSU - CNRS)-Observatoire Terre et Environnement de Lorraine (OTELo), Institut national des sciences de l'Univers (INSU - CNRS)-Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS)-Institut Ecologie et Environnement (INEE), and Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)
Subjects: Materials science, [SDV]Life Sciences [q-bio], Biomedical Engineering, Biocompatible Materials, Microbial Sensitivity Tests, 02 engineering and technology, macromolecular substances, complex mixtures, Biomaterials, Bacteriophage, 03 medical and health sciences, Materials Testing, Escherichia coli, medicine, Bacteriophages, Particle Size, ComputingMilieux_MISCELLANEOUS, 030304 developmental biology, [PHYS]Physics [physics], 0303 health sciences, Molecular Structure, biology, Atomic force microscopy, Biochemistry (medical), technology, industry, and agriculture, Stiffness, Hydrogels, General Chemistry, 021001 nanoscience & nanotechnology, Antimicrobial, biology.organism_classification, Anti-Bacterial Agents, Chemical engineering, Self-healing hydrogels, Stress, Mechanical, medicine.symptom, 0210 nano-technology, Antibacterial activity
Abstract: International audience; The elaboration of efficient hydrogel-based materials with antimicrobial properties requires a refined control of defining their physicochemical features, which includes mechanical stiffness, so as to properly mediate their antibacterial activity. In this work, we design hydrogels consisting of polyelectrolyte multilayer films for the loading of T4 and φX174 bacteria-killing viruses, also called bacteriophages. We investigate the antiadhesion and bactericidal performances of this biomaterial against Escherichia coli, with a specific focus on the effects of chemical cross-linking of the hydrogel matrix, which, in turn, mediates the hydrogel stiffness. Depending on the latter and on phage replication features, it is found that the hydrogels loaded with the bacteria-killing viruses make both contact killing (targeted bacteria are those adhered at the hydrogel surface) and release killing (planktonic bacteria are the targets) possible with ca. 20–80% efficiency after only 4 h of incubation at 25 °C as compared to cases where hydrogels are free of viruses. We further demonstrate the lack of dependence of virus diffusion within the hydrogel and of the maximal viral storage capacity on the hydrogel mechanical properties. In addition to the evidenced bacteriolytic activity of the phages loaded in the hydrogels, the antimicrobial property of the phage-loaded materials is shown to be partly controlled by the chemistry of the hydrogel skeleton and, more specifically, by the mobility of the peripheral free polycationic components, known for their ability to weaken and permeabilize membranes of bacteria, the latter then becoming “easier” targets for the viruses
Published: 2021

42. Search for top‐down and bottom‐up drivers of latitudinal trends in insect herbivory in oak trees in Europe

Author: Ágnes Fürjes-Mikó, Yasmine Kadiri, Thomas Damestoy, Marco Ferrante, Andreas Schuldt, Csaba Béla Eötvös, Arndt Hampe, Marketa Tahadlova, Mihai-Leonard Duduman, Luc Barbaro, Anna Mrazova, Ayco J. M. Tack, Tomas Roslin, Slobodan Milanović, Maria Faticov, Michèle Kaennel-Dobbertin, Andreas Prinzing, György Csóka, Aurélien Sallé, Deborah J. Harvey, Gábor L. Lövei, Katerina Sam, Olivier Bouriaud, Xoaquín Moreira, Michael Scherer-Lorenzen, Lars Opgennoorth, Martin M. Gossner, Juha-Matti Pitkänen, Andrea Galmán, Laurent Augusto, Giada Centenaro, Julia Koricheva, Anne-Maïmiti Dulaurent, Jovan Dobrosavljević, Andrey V. Selikhovkin, Marija Popović, Elena Valdés-Correcher, Manuela Branco, D. Lupaştean, Valentin Queloz, Lassi Suominen, Christophe Bouget, Mikhail V. Kozlov, Rebecca L. Thomas, Anna Yu. Popova, Bastien Castagneyrol, Andy G. Howe, Alexander Kozel, Biodiversité, Gènes & Communautés (BioGeCo), Université de Bordeaux (UB)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Misión Biológica de Galicia, Spanish National Research Council (CSIC), Interactions Sol Plante Atmosphère (UMR ISPA), Ecole Nationale Supérieure des Sciences Agronomiques de Bordeaux-Aquitaine (Bordeaux Sciences Agro)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Dynamiques et écologie des paysages agriforestiers (DYNAFOR), École nationale supérieure agronomique de Toulouse [ENSAT]-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Ecosystèmes forestiers (UR EFNO), Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), University Stefan cel Mare of Suceava (USU), Universidade de Lisboa (ULISBOA), Universita degli Studi di Padova, National Agricultural Research and Innovation Center (NARIC), Agro-écologie, Hydrogéochimie, Milieux et Ressources (AGHYLE), UniLaSalle, Ecosystèmes, biodiversité, évolution [Rennes] (ECOBIO), Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES), ANR-10-LABX-0045,COTE,COntinental To coastal Ecosystems: evolution, adaptability and governance(2010), Mision Biologica de Galicia (MBG), Consejo Superior de Investigaciones Científicas [Madrid] (CSIC), École nationale supérieure agronomique de Toulouse (ENSAT), Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Centre d'Ecologie et des Sciences de la COnservation (CESCO), Muséum national d'Histoire naturelle (MNHN)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), Universidade de Lisboa = University of Lisbon (ULISBOA), Università degli Studi di Padova = University of Padua (Unipd), University of Belgrade [Belgrade], Universitatea Stefan cel Mare Suceava (USU), Stockholm University, Aarhus University [Aarhus], University of the Azores, Swiss Federal Research Institute, Royal Holloway [University of London] (RHUL), University of Copenhagen = Københavns Universitet (UCPH), Université de Rennes (UR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR), Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Centre National de la Recherche Scientifique (CNRS), Georg-August-University = Georg-August-Universität Göttingen, Saint Petersburg State University (SPBU), Biology Centre of the Czech Academy of Sciences (BIOLOGY CENTRE CAS), Czech Academy of Sciences [Prague] (CAS), University of South Bohemia, and This study was carried out with financial support from the French National Research Agency (ANR) in the frame of the Investments for the Future Programme, within the Cluster of Excellence COTE (Continental To coastal Ecosystems: evolution, adaptability and governance) (ANR-10-LABX-45). E.V.C. was funded by the BiodivERsA (BiodivERsA is a network of national and regional funding organisations promoting pan-European research on biodiversity and ecosystem services, and offering innovative opportunities for the conservation and sustainable management of biodiversity) project SPONFOREST (Unraveling the potential of spontaneous forest establishment for improving ecosystem functions and services in dynamic landscapes) (BiodivERsA3-2015-58). The authors warmly thank all the young European citizens and their teachers who made this study possible. They also thank the professional scientists who kindly agreed to participate in this study: Stefan K. Müller (Freie evangelische Schule Lörrach), Olga Mijón Pedreira (teacher IES Rosais 2, Vigo-Spain) and Mickael Pihain (Research Unit 'Ecosystèmes, Biodiversité, Evolution', University of Rennes 1/CNRS, 35042 Rennes, France), and Chloe Mendiondo and Claire Colliaux (Department of Agroecology, Aarhus University, Flakkebjerg Research Centre, DK-4200 Slagelse, Denmark).
Subjects: 0106 biological sciences, защита растений, Range (biology), Leaf Chemistry, media_common.quotation_subject, Climate, Plant Defences, Nutritional quality, Insect, Plant defences, 010603 evolutionary biology, 01 natural sciences, Latitude, Quercus robur, biotic interactions, биотические факторы, Avian Insectivory, Artificial Prey, Avian insectivory, Natural enemies, climatic gradients, pedunculate oak, Ecology, Evolution, Behavior and Systematics, media_common, 2. Zero hunger, [SDV.EE]Life Sciences [q-bio]/Ecology, environment, Global and Planetary Change, Herbivore, насекомые-вредители, Ecology, biology, 010604 marine biology & hydrobiology, Artificial prey, климатические градиенты, 15. Life on land, Latitudinal gradients, biology.organism_classification, климатические факторы, climatic factors, Taxon, 13. Climate action, широтные градиенты, Leaf chemistry, herbivorous insects, травоядные насекомые, дуб черешчатый, 010606 plant biology & botany
Abstract: AIM: The strength of species interactions is traditionally expected to increase toward the Equator. However, recent studies have reported opposite or inconsistent latitudinal trends in the bottom-up (plant quality) and top-down (natural enemies) forces driving herbivory. In addition, these forces have rarely been studied together thus limiting previous attempts to understand the effect of large-scale climatic gradients on herbivory. LOCATION: Europe. TIME PERIOD: 2018–2019. MAJOR TAXA STUDIED: Quercus robur. METHODS: We simultaneously tested for latitudinal variation in plant–herbivore–natural enemy interactions. We further investigated the underlying climatic factors associated with variation in herbivory, leaf chemistry and attack rates in Quercus robur across its complete latitudinal range in Europe. We quantified insect leaf damage and the incidence of specialist herbivores as well as leaf chemistry and bird attack rates on dummy caterpillars on 261 oak trees. RESULTS: Climatic factors rather than latitude per se were the best predictors of the large-scale (geographical) variation in the incidence of gall-inducers and leaf-miners as well as in leaf nutritional content. However, leaf damage, plant chemical defences (leaf phenolics) and bird attack rates were not influenced by climatic factors or latitude. The incidence of leaf-miners increased with increasing concentrations of hydrolysable tannins, whereas the incidence of gall-inducers increased with increasing leaf soluble sugar concentration and decreased with increasing leaf C : N ratios and lignins. However, leaf traits and bird attack rates did not vary with leaf damage. MAIN CONCLUSIONS: These findings help to refine our understanding of the bottom-up and top-down mechanisms driving geographical variation in plant–herbivore interactions, and indicate the need for further examination of the drivers of herbivory on trees. This study was carried out with financial support from the French National Research Agency (ANR) in the frame of the Investments for the Future Programme, within the Cluster of Excellence COTE (Continental To coastal Ecosystems: evolution, adaptability and governance) (ANR-10-LABX-45). E.V.C. was funded by the BiodivERsA (BiodivERsA is a network of national and regional funding organisations promoting pan-European research on biodiversity and ecosystem services, and offering innovative opportunities for the conservation and sustainable management of biodiversity) project SPONFOREST (Unraveling the potential of spontaneous forest establishment for improving ecosystem functions and services in dynamic landscapes) (BiodivERsA3-2015-58). info:eu-repo/semantics/publishedVersion
Published: 2021

43. Dioecy Is Associated with High Genetic Diversity and Adaptation Rates in the Plant Genus Silene

Author: Alex Widmer, Raquel Tavares, Aline Muyle, Maeva Mollion, Sylvain Glémin, Hélène Martin, Sophie Gallina, Alexandre Sérgio Silva, Niklaus Zemp, Gabriel A. B. Marais, Thomas Bataillon, Pascal Touzet, Laboratoire de Biométrie et Biologie Evolutive - UMR 5558 (LBBE), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut National de Recherche en Informatique et en Automatique (Inria)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-Centre National de la Recherche Scientifique (CNRS), University of California [Irvine] (UC Irvine), University of California (UC), Institut de Biologie Intégrative et des Systèmes [Québec] (IBIS), Évolution, Écologie et Paléontologie (Evo-Eco-Paleo) - UMR 8198 (Evo-Eco-Paléo (EEP)), Université de Lille-Centre National de la Recherche Scientifique (CNRS), Eidgenössische Technische Hochschule - Swiss Federal Institute of Technology [Zürich] (ETH Zürich), Aarhus University [Aarhus], Ecosystèmes, biodiversité, évolution [Rennes] (ECOBIO), Université de Rennes (UR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR), Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Centre National de la Recherche Scientifique (CNRS), Uppsala University, ANR-11-BSV7-013-03, Agence Nationale de la Recherche, 31003A-182675, Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung, French Research Ministry, HFSPO LT000496/2018-L, Postdoctoral fellowships, ANR-11-BSV7-0013,TRANS,Les transitions de systèmes de reproduction chez les angiosperms et leurs conséquences génomiques(2011), University of California [Irvine] (UCI), University of California, Évolution, Écologie et Paléontologie (Evo-Eco-Paleo) - UMR 8198 (Evo-Eco-Paléo), Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université de Rennes 1 (UR1), and Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)
Subjects: 0106 biological sciences, Biologisk systematik, Dioecy, Population, Adaptation, Biological, Population genetics, Flowers, Biological Systematics, AcademicSubjects/SCI01180, 010603 evolutionary biology, 01 natural sciences, Population genomics, [SDV.GEN.GPL]Life Sciences [q-bio]/Genetics/Plants genetics, Allee effect, 03 medical and health sciences, Genetics, Selection, Genetic, education, Silene, Molecular Biology, Ecology, Evolution, Behavior and Systematics, Discoveries, 030304 developmental biology, 0303 health sciences, Genetic diversity, education.field_of_study, Phylogenetic inertia, [SDV.GEN.GPO]Life Sciences [q-bio]/Genetics/Populations and Evolution [q-bio.PE], biology, Reproduction, AcademicSubjects/SCI01130, Genetic Variation, population genetics, selection efficacy, 15. Life on land, biology.organism_classification, Biological Evolution, Evolutionary biology, Species richness, sexual systems, RNA-seq, angiosperms, [SDE.BE]Environmental Sciences/Biodiversity and Ecology
Abstract: About 15,000 angiosperm species (∼6%) have separate sexes, a phenomenon known as dioecy. Why dioecious taxa are so rare is still an open question. Early work reported lower species richness in dioecious compared with nondioecious sister clades, raising the hypothesis that dioecy may be an evolutionary dead-end. This hypothesis has been recently challenged by macroevolutionary analyses that detected no or even positive effect of dioecy on diversification. However, the possible genetic consequences of dioecy at the population level, which could drive the long-term fate of dioecious lineages, have not been tested so far. Here, we used a population genomics approach in the Silene genus to look for possible effects of dioecy, especially for potential evidence of evolutionary handicaps of dioecy underlying the dead-end hypothesis. We collected individual-based RNA-seq data from several populations in 13 closely related species with different sexual systems: seven dioecious, three hermaphroditic, and three gynodioecious species. We show that dioecy is associated with increased genetic diversity, as well as higher selection efficacy both against deleterious mutations and for beneficial mutations. The results hold after controlling for phylogenetic inertia, differences in species census population sizes and geographic ranges. We conclude that dioecious Silene species neither show signs of increased mutational load nor genetic evidence for extinction risk. We discuss these observations in the light of the possible demographic differences between dioecious and self-compatible hermaphroditic species and how this could be related to alternatives to the dead-end hypothesis to explain the rarity of dioecy.
Published: 2021

44. Activity assessment of tomato endophytic bacteria bioactive compounds for the postharvest biocontrol of Botrytis cinerea

Author: Salem Elkahoui, Naceur Djébali, Manel Chaouachi, Laurent Gentzbittel, Cécile Ben, Takwa Marzouk, Selim Jallouli, University of Tunis El Manar, Laboratoire Ecologie Fonctionnelle et Environnement (ECOLAB), Université Toulouse III - Paul Sabatier (UT3), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Observatoire Midi-Pyrénées (OMP), Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Centre National de la Recherche Scientifique (CNRS), Skolkovo Institute of Science and Technology [Moscow] (Skoltech), Laboratoire Ecologie Fonctionnelle et Environnement (LEFE), Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université de Toulouse (UT)-Observatoire Midi-Pyrénées (OMP), Institut de Recherche pour le Développement (IRD)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France -Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France -Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), and Université de Toulouse (UT)
Subjects: 0106 biological sciences, 2. Zero hunger, biology, Microorganism, [SDV]Life Sciences [q-bio], fungi, Biological pest control, food and beverages, Bacillus, 04 agricultural and veterinary sciences, Enterobacter, Horticulture, biology.organism_classification, 01 natural sciences, 040501 horticulture, Fungicide, Ornamental plant, Postharvest, 0405 other agricultural sciences, Agronomy and Crop Science, 010606 plant biology & botany, Food Science, Botrytis cinerea
Abstract: Botrytis cinerea is one of the most important postharvest fungal pathogens causing significant losses in fresh fruits, vegetables and ornamentals. Synthetic fungicides are primarily used to control postharvest decay loss, but due to their hazardous use the recent trend is shifting toward safer and more eco-friendly alternatives. The use of antagonistic microorganisms is becoming popular throughout the world. This study investigated the antifungal, the plant growth promoting activities and the identity of volatile organic compounds (VOCs) produced by tomato-derived endophytic bacteria strains. The capacity of selected strains to prevent postharvest B. cinerea infection on tomato fruit through VOCs and soluble compounds was also studied. A collection of 50 bacterial strains was established from different organs of tomato plants sampled from six localities in Cape Bon region (Tunisia). Despite the small geographical scale, complexity and abundance of endophytic communities varied greatly according to the site of origin. Healthy tomato plants harbor diverse endophytic bacteria of Bacillus and Enterobacter genera colonizing mainly leaves with a significant enrichment with Bacillus strains. The in vitro dual culture assays showed that 36 % of the endophytic bacterial strains produce antifungal VOCs against B. cinerea. To our knowledge, this is the first report of VOCs antifungal activity produced by B. nakamurai, B. pseudomycoides, B. proteolyticus, B. thuringiensis, E. asburiae and E. cloacae against B. cinerea. About 14 % of bacterial strains produce VOCs with in vitro specific promoting effects on tomato seedling length or biomass production. The five selected antagonistic endophytic bacterial strains produced a core set of seven VOCs along with different strain-specific and known antifungal VOCs such as 3-Methylbutan-1-ol, sulfur-containing compounds, 2-Heptanone and Dodecanal. Tomato fruit bio-protection assay showed that the Enterobacter strain TR1 produces the most protective VOCs against B. cinerea infection with 3-Methylbutan-1-ol as a major volatile compound which totally suppressed B. cinerea growth and infection on tomato fruit at 0.442 mL L−1 headspace, whereas the Bacillus strains showed better protection against fungal infection when applied as vegetative cells on tomato fruit. These results support the use of the selected strains as potential biocontrol agents to reduce postharvest decay of B. cinerea, as well as 3-Methylbutan-1-ol as promising antifungal volatile to apply during postharvest commercialization of tomato fruit.
Published: 2021

45. Using the ecosystem engineer concept to test the functional effects of a decrease in earthworm abundance due to an historic metal pollution gradient

Author: Eva Schreck, Céline Pelosi, Line Capowiez, Thibaut Leveque, Yvan Capowiez, Christophe Mazzia, Camille Dumat, Environnement Méditerranéen et Modélisation des Agro-Hydrosystèmes (EMMAH), Avignon Université (AU)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), École nationale supérieure agronomique de Toulouse [ENSAT], Institut méditerranéen de biodiversité et d'écologie marine et continentale (IMBE), Centre National de la Recherche Scientifique (CNRS)-Institut de recherche pour le développement [IRD] : UMR237-Aix Marseille Université (AMU)-Avignon Université (AU), Géosciences Environnement Toulouse (GET), Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Université Toulouse III - Paul Sabatier (UT3), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Observatoire Midi-Pyrénées (OMP), Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD), Laboratoire Ecologie Fonctionnelle et Environnement (ECOLAB), Université Toulouse III - Paul Sabatier (UT3), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Observatoire Midi-Pyrénées (OMP), Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Centre National de la Recherche Scientifique (CNRS), École nationale supérieure agronomique de Toulouse (ENSAT), Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT)-Université de Toulouse (UT), Avignon Université (AU)-Aix Marseille Université (AMU)-Institut de recherche pour le développement [IRD] : UMR237-Centre National de la Recherche Scientifique (CNRS), Institut de Recherche pour le Développement (IRD)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut national des sciences de l'Univers (INSU - CNRS)-Observatoire Midi-Pyrénées (OMP), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France -Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France -Centre National de la Recherche Scientifique (CNRS), Laboratoire Ecologie Fonctionnelle et Environnement (LEFE), Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université de Toulouse (UT)-Observatoire Midi-Pyrénées (OMP), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France -Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France -Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), and Université de Toulouse (UT)
Subjects: 0106 biological sciences, Soil Science, 01 natural sciences, Ecosystem engineer, Water infiltration, Soil properties, Macroporosity, Ecology, biology, Macropore, Earthworm, 04 agricultural and veterinary sciences, Metal pollution, Burrow, biology.organism_classification, Agricultural and Biological Sciences (miscellaneous), Soil core, Infiltration (hydrology), Agronomy, Lead, [SDE]Environmental Sciences, 040103 agronomy & agriculture, 0401 agriculture, forestry, and fisheries, Environmental science, 010606 plant biology & botany
Abstract: International audience; In a companion study, carried out in a fallow meadow close to a lead recycling factory, we showed that earthworms were absent in the first 20 m and then gradually increased in abundance from 30 to 110 m from the factory. Here we assessed in the same meadow whether these differences in earthworm abundance were associated with the loss of physical soil properties. Soil cores were sampled and infiltration measured in situ at five distances from the factory (10, 30, 50, 80 and 110 m). X-ray tomography was used to characterize the earthworm burrow systems within cores. The burrow systems were minimal at the first two distances, with the only macropores observed probably produced by insects such as ants. Typical earthworm burrows were seen at 50 m but most of their characteristics (volume, diameter, continuity) were similar to those observed at 10 or 30 m. Dense and well-developed burrow systems were observed at 80 and 110 m from the factory with significantly larger volume and continuity. Burrow diameter at 80 m was significantly higher than at closer distances but it significantly decreased at 110 m associated with the higher abundance of endogeics earthworm species. Water infiltration followed the same trend with significantly lower rates at the first two distances compared to those further from the factory, where rates increased from 70 to 250%. This study emphasizes the need to develop a more functional approach to study the spatial effects of contamination on soil ecological processes and fertility, beyond modifications in earthworm communities.
Published: 2021

46. Experimental assessment of trophic ecology in a generalist spider predator: Implications for biocontrol in Uruguayan crops

Author: Horacio Silva, Sebastián Martínez, Luis Fernando García, Erika Núñez, Julien Pétillon, Mariángeles Lacava, Universidad de la República [Montevideo] (UCUR), Instituto Nacional de Investigación Agropecuaria (INIA), Ecosystèmes, biodiversité, évolution [Rennes] (ECOBIO), Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR)-Centre National de la Recherche Scientifique (CNRS), Agencia Nacional de Investigacion e Innovacion, Comision Sectorial de Investigacion Cientifica, Instituro Nacional de Investigacion Agropecuaria [AZ_33], Universidad de la República [Montevideo] (UDELAR), Université de Rennes (UR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR), and Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Centre National de la Recherche Scientifique (CNRS)
Subjects: 0106 biological sciences, Spider, biology, Ecology, rice, Wandering spider, Wolf spider, Biological pest control, biological control, biology.organism_classification, Generalist and specialist species, behavioural sequence, conditional prey acceptance, 010603 evolutionary biology, 01 natural sciences, Predation, 010602 entomology, Insect Science, soybean, [SDE.BE]Environmental Sciences/Biodiversity and Ecology, Agronomy and Crop Science, Lycosa, wolf spider, Trophic level
Abstract: International audience; Conservative biological control promotes the use of native natural enemies to limit the size and growth of pest populations. Although spiders constitute one of the most important groups of native predators in several crops, their trophic ecology remains largely unknown, especially for several generalist taxa. In laboratory, we assessed the predatory behaviour of a wandering spider (the wolf spiderLycosa thorelli(Keyserling, 1877) against several arthropods varying in size and trophic positions, all found in South American soybean and rice crops. As prey we used the bugPiezodorus guildinii(Westwood, 1837) as well as larvae and adults of the mothSpodoptera frugiperda(Smith, 1797), both being considered important pests in Uruguayan crops. We also used several non-pest arthropods as prey, sarcophagid flies, carabid beetles and wolf spiders. All prey were attacked in more or less high, although not statistically differing, proportions. However, carabids were not consumed, and bugs were consumed in significantly lower proportions than flies. A negative correlation was found between prey size and acceptance rate. Immobilization times were longer against larvae when compared to moths and flies, while predatory sequences were longer for bugs when compared to flies, moths and spiders. In addition, we found a positive effect of prey size on predatory sequence length and complexity. Our results confirm the ability of spiders to attack and feed upon prey with different morphologies, included well-defended arthropods, and their potential use as natural enemies of several pests in South American crops.
Published: 2021

47. Heteroaggregates of Polystyrene Nanospheres and Organic Matter: Preparation, Characterization and Evaluation of Their Toxicity to Algae in Environmentally Relevant Conditions

Author: Jessica Ferriol, Laury Gauthier, Antoine Minet, Laura Rowenczyk, Julien Gigault, Jérôme Silvestre, Magali Albignac, Eric Pinelli, Anne Françoise Mingotaud, Clément Roux, Fanny Clergeaud, Alexandra Ter Halle, Loïc Ten-Hage, Florence Mouchet, Joséphine Leflaive, David Ory, Interactions moléculaires et réactivité chimique et photochimique (IMRCP), Université Toulouse III - Paul Sabatier (UT3), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Institut de Chimie du CNRS (INC)-Institut de Chimie de Toulouse (ICT-FR 2599), Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Université Toulouse III - Paul Sabatier (UT3), Université Fédérale Toulouse Midi-Pyrénées-Institut de Chimie du CNRS (INC)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD), Laboratoire Ecologie Fonctionnelle et Environnement (ECOLAB), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Observatoire Midi-Pyrénées (OMP), Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Centre National de la Recherche Scientifique (CNRS), Laboratoire de Biodiversité et Biotechnologies Microbiennes (LBBM), PIERRE FABRE-EDF (EDF)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Observatoire océanologique de Banyuls (OOB), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), LIttoral ENvironnement et Sociétés - UMRi 7266 (LIENSs), Université de La Rochelle (ULR)-Centre National de la Recherche Scientifique (CNRS), Géosciences Rennes (GR), Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)-Institut national des sciences de l'Univers (INSU - CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR)-Centre National de la Recherche Scientifique (CNRS), EST/2017/1/2019, Agence Nationale de Sécurité Sanitaire de l’Alimentation, de l’Environnement et du Travail, Institut de Chimie de Toulouse (ICT), Institut de Recherche pour le Développement (IRD)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT)-Institut de Recherche pour le Développement (IRD)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Fédération de Recherche Fluides, Energie, Réacteurs, Matériaux et Transferts (FERMAT), Institut National des Sciences Appliquées - Toulouse (INSA Toulouse), Institut National des Sciences Appliquées (INSA)-Université de Toulouse (UT)-Institut National des Sciences Appliquées (INSA)-Université de Toulouse (UT)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT)-Institut National des Sciences Appliquées - Toulouse (INSA Toulouse), Institut National des Sciences Appliquées (INSA)-Université de Toulouse (UT)-Institut National des Sciences Appliquées (INSA)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Laboratoire Ecologie Fonctionnelle et Environnement (LEFE), Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université de Toulouse (UT)-Observatoire Midi-Pyrénées (OMP), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France -Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France -Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT), LIttoral ENvironnement et Sociétés (LIENSs), La Rochelle Université (ULR)-Centre National de la Recherche Scientifique (CNRS), Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR), Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Centre National de la Recherche Scientifique (CNRS), IDeAS - Interfaces Dynamiques et Assemblages Stimulables (IDeAS), Institut National des Sciences Appliquées (INSA)-Université de Toulouse (UT)-Institut National des Sciences Appliquées (INSA)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Institut de Chimie de Toulouse (ICT), SMODD - Systèmes Moléculaires Organisés et Développement Durable (SMODD), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Institut de Recherche pour le Développement (IRD)-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées, Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Observatoire Midi-Pyrénées (OMP), and Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP)
Subjects: planktonic microalgae, General Chemical Engineering, 010501 environmental sciences, 01 natural sciences, Article, lcsh:Chemistry, 03 medical and health sciences, chemistry.chemical_compound, Colloid, Adsorption, Algae, [CHIM]Chemical Sciences, General Materials Science, Organic matter, 14. Life underwater, benthic microalgae, heteroaggregation, freshwater, 030304 developmental biology, 0105 earth and related environmental sciences, Pollutant, chemistry.chemical_classification, 0303 health sciences, biology, Aquatic ecosystem, toxicity, biology.organism_classification, nanoplastics, chemistry, lcsh:QD1-999, 13. Climate action, Environmental chemistry, Toxicity, Polystyrene
Abstract: International audience; The environmental fate and behavior of nanoplastics (NPs) and their toxicity against aquatic organisms are under current investigation. In this work, relevant physicochemical characterizations were provided to analyze the ecotoxicological risk of NPs in the aquatic compartment. For this purpose, heteroaggregates of 50 nm polystyrene nanospheres and natural organic matter were prepared and characterized. The kinetic of aggregation was assimilated to a reaction-limited colloid aggregation mode and led to the formation of heteroaggregates in the range of 100–500 nm. Toxicities of these heteroaggregates and polystyrene nanospheres (50 and 350 nm) were assessed for a large range of concentrations using four benthic and one planktonic algal species, in regards to particle states in the media. Heteroaggregates and nanospheres were shown to be stable in the exposure media during the ecotoxity tests. The algal species exhibited very low sensitivity (growth and photosynthetic activity), with the noteworthy exception of the planktonic alga, whose growth increased by more than 150% with the heteroaggregates at 1 µg L−1. Despite the lack of a strong direct effect of the NPs, they may still impair the functioning of aquatic ecosystems by destabilizing the competitive interactions between species. Moreover, further work should assess the toxicity of NPs associated with other substances (adsorbed pollutants or additives) that could enhance the NP effects
Published: 2021

48. Disentangling the direct and indirect effects of agricultural runoff on freshwater ecosystems subject to global warming: A microcosm study

Author: Sabine Hilt, Mechthild Schmitt-Jansen, Arthur Compin, Vinita Vijayaraj, Camille Courcoul, Arnaud Elger, Stéphanie Boulêtreau, Elisabeth M. Gross, Bastian H. Polst, Joséphine Leflaive, Vincent E. J. Jassey, Joey L. Allen, Jessica Ferriol, Martin Laviale, Herwig Stibor, Laboratoire Ecologie Fonctionnelle et Environnement (ECOLAB), Université Toulouse III - Paul Sabatier (UT3), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Observatoire Midi-Pyrénées (OMP), Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Centre National de la Recherche Scientifique (CNRS), Laboratoire Interdisciplinaire des Environnements Continentaux (LIEC), Institut national des sciences de l'Univers (INSU - CNRS)-Observatoire Terre et Environnement de Lorraine (OTELo), Institut national des sciences de l'Univers (INSU - CNRS)-Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Leibniz Institute of Freshwater Ecology and Inland Fisheries (IGB), Helmholtz Zentrum für Umweltforschung = Helmholtz Centre for Environmental Research (UFZ), Ludwig Maximilian University [Munich] (LMU), ANR-17-CE32-0013,CLIMSHIFT,Changement de régime dans des écosystèmes d'eau douce exposés à des stress combinés de température, engrais et pesticides(2017), Laboratoire Ecologie Fonctionnelle et Environnement (LEFE), Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université de Toulouse (UT)-Observatoire Midi-Pyrénées (OMP), Institut de Recherche pour le Développement (IRD)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France -Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France -Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Observatoire Terre et Environnement de Lorraine (OTELo), and Institut national des sciences de l'Univers (INSU - CNRS)-Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS)
Subjects: Environmental Engineering, agricultural run-off, [SDE.MCG]Environmental Sciences/Global Changes, 0208 environmental biotechnology, Lymnaea stagnalis, 02 engineering and technology, 010501 environmental sciences, global warming, 01 natural sciences, Freshwater ecosystem, biotic interactions, [SDV.EE.ECO]Life Sciences [q-bio]/Ecology, environment/Ecosystems, Phytoplankton, Animals, Periphyton, Multiple stressors, Waste Management and Disposal, Ecosystem, 0105 earth and related environmental sciences, Water Science and Technology, Civil and Structural Engineering, Trophic level, aquatic ecosystems, Primary producers, biology, Ecology, Ecological Modeling, Aquatic ecosystem, Agriculture, biology.organism_classification, Pollution, 6. Clean water, 020801 environmental engineering, Lakes, 13. Climate action, Environmental science, [SDE.BE]Environmental Sciences/Biodiversity and Ecology, Microcosm
Abstract: International audience; Aquatic ecosystems are exposed to multiple stressors such as agricultural run-off (ARO) and climate-change related increase of temperature. We aimed to determine how ARO and the frequency of its input can affect shallow lake ecosystems through direct and indirect effects on primary producers and primary consumers, and whether warming can mitigate or reinforce the impact of ARO. We performed a set of microcosm experiments simulating ARO using a cocktail of three organic pesticides (terbuthylazine, tebuconazole, pirimicarb), copper and nitrate. Two experiments were performed to determine the direct effect of ARO on primary producers (submerged macrophytes, periphyton and phytoplankton) and on the grazing snail Lymnaea stagnalis, respectively. Three different ARO concentrations added as single doses or as multiple pulses at two different temperatures (22°C and 26°C) were applied. In a third experiment, primary producers and consumers were exposed together to allow trophic interactions. When functional groups were exposed alone, ARO had a direct positive effect on phytoplankton and a strong negative effect on L. stagnalis. When exposed together, primary producer responses were contrasting, as the negative effect of ARO on grazers led to an indirect positive effect on periphyton. Periphyton in turn exerted a strong control on phytoplankton, leading to an indirect negative effect of ARO on phytoplankton. Macrophytes showed little response to the stressors. Multiple pulse exposure increased the effect of ARO on L. stagnalis and periphyton when compared with the same quantity of ARO added as a single dose. The increase in temperature had only limited effects. Our results highlight the importance of indirect effects of stressors, here mediated by grazers and periphyton, and the frequency of the ARO input in aquatic ecosystems.
Published: 2021

49. Depth distribution of soil organic matter and burrowing activity of earthworms—mesocosm study using X-ray tomography and luminophores

Author: Jean-Marc Bonzom, Jean-Christophe Poggiale, Yvan Capowiez, Audrey Vallat, Franck Gilbert, Aix-Marseille Université - AMU (FRANCE), Centre National de la Recherche Scientifique - CNRS (FRANCE), Institut National Polytechnique de Toulouse - Toulouse INP (FRANCE), Institut national de recherche pour l'agriculture, l'alimentation et l'environnement - INRAE (FRANCE), Institut de Radioprotection et de Sûreté Nucléaire - IRSN (FRANCE), Institut de Recherche pour le Développement - IRD (FRANCE), Université Toulouse III - Paul Sabatier - UT3 (FRANCE), Université d'Avignon et des Pays de Vaucluse (FRANCE), Université de Toulon - UTLN (FRANCE), Environnement Méditerranéen et Modélisation des Agro-Hydrosystèmes (EMMAH), Avignon Université (AU)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Laboratoire Ecologie Fonctionnelle et Environnement (ECOLAB), Université Toulouse III - Paul Sabatier (UT3), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Observatoire Midi-Pyrénées (OMP), Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Centre National de la Recherche Scientifique (CNRS), PSE-ENV/SRTE/LECO, Institut de Radioprotection et de Sûreté Nucléaire (IRSN), Institut méditerranéen d'océanologie (MIO), Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université de Toulon (UTLN), Laboratoire Ecologie Fonctionnelle et Environnement (LEFE), Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université de Toulouse (UT)-Observatoire Midi-Pyrénées (OMP), Institut de Recherche pour le Développement (IRD)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France -Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France -Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT), Laboratoire d'écotoxicologie des radionucléides (IRSN/PSE-ENV/SRTE/LECO), Service de recherche sur les transferts et les effets des radionucléides sur les écosystèmes (IRSN/PSE-ENV/SRTE), Institut de Radioprotection et de Sûreté Nucléaire (IRSN)-Institut de Radioprotection et de Sûreté Nucléaire (IRSN), Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Toulon (UTLN)-Centre National de la Recherche Scientifique (CNRS), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Observatoire Midi-Pyrénées (OMP), Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées, Laboratoire d'écotoxicologie des radionucléides (PRP-ENV/SERIS/LECO), Institute of Radioprotection and Nuclear Safety (IRSN, France), and Nereis Park contribution number 42
Subjects: Soil Science, Aporrectodea nocturna, [SDV.SA.SDS]Life Sciences [q-bio]/Agricultural sciences/Soil study, Microbiology, Mesocosm, 03 medical and health sciences, Organic matter, 030304 developmental biology, chemistry.chemical_classification, [SDV.EE]Life Sciences [q-bio]/Ecology, environment, 0303 health sciences, Topsoil, Behavior, Apporrectodea icterica, biology, Lumbricus terrestris, Soil organic matter, Science des sols, Earthworm, 04 agricultural and veterinary sciences, 15. Life on land, Aporrectodea caliginosa, biology.organism_classification, Zoologie des invertébrés, [SDV.BA.ZI]Life Sciences [q-bio]/Animal biology/Invertebrate Zoology, chemistry, Environmental chemistry, Soil water, 040103 agronomy & agriculture, 0401 agriculture, forestry, and fisheries, Soil horizon, Agronomy and Crop Science
Abstract: International audience; Earthworms feed on organic matter present at the soil surface or within the soil. Thus, its distribution in the soil profile is likely to greatly influence earthworm behavior and, in turn, their burrow system. To test this idea, two anecic and two endogeic earthworm species were introduced into repacked soil cores (depth = 30 cm) upper half filled with a top soil containing 4% organic matter (0–15 cm) and lower half filled with a deep soil at 2% organic matter (15–30 cm). Earthworm behavior was studied using X-ray tomography combined with luminophores (colored particulate tracers of 63–125 μm size) placed at 0, 3, and 12 cm depth, a method widely used in sediment ecology. We observed that anecic and endogeic earthworms had contrasting reactions to the conditions with only endogeic species burrowing more intensively in the upper part. From a quantitative point of view, only a few percent of luminophores were displaced. However, luminophore displacements also provided qualitative information to complement the tomography: (i) endogeic species and especially Aporrectodea caliginosa bioturbated the most soil close to the surface (3 cm depth) and (ii) the two anecic species influenced the luminophore distribution differentially with Lumbricus terrestris displacing significantly more luminophores, whatever their initial depth, than Aporrectodea nocturna due to intense surface cast activity. Beyond methodological developments, our study found that endogeic earthworms burrow more in zones with higher organic matter contents and this explains why they are mainly found close to the soil surface in non-tilled soils.
Published: 2021

50. Rapid evolution of post-zygotic reproductive isolation is widespread in Arctic plant lineages

Author: Lucas Marie-Orleach, Christian Brochmann, Loren H. Rieseberg, A. Lovisa S. Gustafsson, Galina Gussarova, Liv Borgen, Hajime Ikeda, Alexandre Antonelli, Natural History Museum [Oslo], University of Oslo (UiO), University of Tromsø (UiT), Okayama University, University of Gothenburg (GU), University of Oxford [Oxford], Royal Botanic Gardens, Kew, Ecosystèmes, biodiversité, évolution [Rennes] (ECOBIO), Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES), University of British Columbia (UBC), University of Oxford, Royal Botanic Gardens [Kew], Université de Rennes (UR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR), Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Centre National de la Recherche Scientifique (CNRS), Natural History Museum, Molecular Life Science, Knut and Alice Wallenberg Foundation, Royal Botanic Gardens, University of Oslo, Svalbard Science Forum, Norwegian Polar Institute, Czech Science Foundation, Academy of Sciences of the Czech Republic, Swedish Research Council, and Swedish Foundation for Strategic Research
Subjects: 0106 biological sciences, Arctic plants, Reproductive Isolation, Zoology, Plant Science, incipient speciation, 010603 evolutionary biology, 01 natural sciences, AcademicSubjects/SCI01080, Intraspecific competition, hybrid sterility, 03 medical and health sciences, Ranunculus pygmaeus, Arctic vegetation, 030304 developmental biology, 0303 health sciences, biology, AcademicSubjects/SCI01210, Reproduction, AcademicSubjects/SCI01130, Selfing, Reproductive isolation, Original Articles, 15. Life on land, Incipient speciation, Plants, biology.organism_classification, Genetic divergence, Arctic, 13. Climate action, Cardamine, Hybridization, Genetic, Pollen, [SDE.BE]Environmental Sciences/Biodiversity and Ecology, geographic locations
Abstract: Background and Aims The Arctic tundra, with its extreme temperatures and short growing season, is evolutionarily young and harbours one of the most species-poor floras on Earth. Arctic species often show little phenotypic and genetic divergence across circumpolar ranges. However, strong intraspecific post-zygotic reproductive isolation (RI) in terms of hybrid sterility has frequently evolved within selfing Arctic species of the genus Draba. Here we assess whether incipient biological species are common in the Arctic flora. Methods We conducted an extensive crossing experiment including six species representing four phylogenetically distant families collected across the circumpolar Arctic. We crossed conspecific parental populations representing different spatial scales, raised 740 F1 hybrids to maturity and measured fertility under laboratory conditions. We examined genetic divergence between populations for two of these species (Cardamine bellidifolia and Ranunculus pygmaeus). Key Results In five of the six species, we find extensive reduction in pollen fertility and seed set in F1 hybrids; 219 (46 %) of the 477 F1 hybrids generated between parents separated by ≥427 km had Conclusion We show that post-zygotic RI has developed multiple times within taxonomically recognized Arctic species belonging to several distantly related lineages, and that RI may have developed over just a few millennia. Rapid and widespread evolution of incipient biological species in the Arctic flora might be associated with frequent bottlenecks due to glacial cycles, and/or selfing mating systems, which are common in the harsh Arctic environment where pollinators are scarce.
Published: 2021

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