1. Analysis of an improved Cyanophora paradoxa genome assembly
- Author
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Dana C. Price, Thamali Kariyawasam, Hwan Su Yoon, Debashish Bhattacharya, Steven G. Ball, Camilla Ferrari, Andreas P.M. Weber, Fabio Facchinelli, Jae-Hyeok Lee, Ugo Cenci, Marek Mutwil, Robyn Roth, Ursula Goodenough, Nicole E. Wagner, Cheong Xin Chan, Rutgers, The State University of New Jersey [New Brunswick] (RU), Rutgers University System (Rutgers), Washington University in Saint Louis (WUSTL), British Columbia, Nanyang Technological University [Singapour], Department of Molecular Physiology [Potsdam-Golm], Max Planck Institute of Molecular Plant Physiology (MPI-MP), Max-Planck-Gesellschaft-Max-Planck-Gesellschaft, Cluster of Excellence on Plant Sciences (CEPLAS), Universität zu Köln-Heinrich Heine Universität Düsseldorf = Heinrich Heine University [Düsseldorf]-Max Planck Institute for Plant Breeding Research (MPIPZ), Unité de Glycobiologie Structurale et Fonctionnelle UMR 8576 (UGSF), Institut National de la Recherche Agronomique (INRA)-Université de Lille-Centre National de la Recherche Scientifique (CNRS), University of Queensland [Brisbane], Sungkyunkwan University [Suwon] (SKKU), School of Biological Sciences, Heinrich Heine Universität Düsseldorf = Heinrich Heine University [Düsseldorf]-Max Planck Institute for Plant Breeding Research (MPIPZ)-Universität zu Köln = University of Cologne, Université de Lille-Centre National de la Recherche Scientifique (CNRS), ANR-18-CE13-0027,MATHTEST,Tester l'hypothèse du ménage à trois(2018), Université de Lille, CNRS, Rutgers, The State University of New Jersey [New Brunswick] [RU], Cluster of Excellence on Plant Sciences [CEPLAS], Unité de Glycobiologie Structurale et Fonctionnelle UMR 8576 [UGSF], and Sungkyunkwan University [Suwon] [SKKU]
- Subjects
Cyanophora paradoxa ,Archaeplastida ,phylogenomics ,tree of eukaryotes ,ultrastructure ,0106 biological sciences ,[SDV]Life Sciences [q-bio] ,Peptidoglycan ,Red algae ,01 natural sciences ,Genome ,03 medical and health sciences ,Glaucophyte ,Cyanophora Paradoxa ,Genetics ,Glaucophyta ,Viridiplantae ,Molecular Biology ,Phylogeny ,030304 developmental biology ,0303 health sciences ,biology ,Biological sciences [Science] ,General Medicine ,Full Papers ,biology.organism_classification ,[CHIM.THEO]Chemical Sciences/Theoretical and/or physical chemistry ,Editor's Choice ,Cyanophora ,Evolutionary biology ,Green algae ,Genome, Plant ,010606 plant biology & botany - Abstract
Glaucophyta are members of the Archaeplastida, the founding group of photosynthetic eukaryotes that also includes red algae (Rhodophyta), green algae, and plants (Viridiplantae). Here we present a high-quality assembly, built using long-read sequences, of the ca. 100 Mb nuclear genome of the model glaucophyte Cyanophora paradoxa. We also conducted a quick-freeze deep-etch electron microscopy (QFDEEM) analysis of C. paradoxa cells to investigate glaucophyte morphology in comparison to other organisms. Using the genome data, we generated a resolved 115-taxon eukaryotic tree of life that includes a well-supported, monophyletic Archaeplastida. Analysis of muroplast peptidoglycan (PG) ultrastructure using QFDEEM shows that PG is most dense at the cleavage-furrow. Analysis of the chlamydial contribution to glaucophytes and other Archaeplastida shows that these foreign sequences likely played a key role in anaerobic glycolysis in primordial algae to alleviate ATP starvation under night-time hypoxia. The robust genome assembly of C. paradoxa significantly advances knowledge about this model species and provides a reference for exploring the panoply of traits associated with the anciently diverged glaucophyte lineage.
- Published
- 2019
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