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Bacterial communities have been identified as functional key members in soil ecology. A deep relation with these communities maintains forest coverture. Trees harbor particular bacteriomes in the rhizosphere, endosphere, or phyllosphere, different from bulk-soil representatives. Moreover, the plant microbiome appears to be specific for the plant-hosting species, varies through season, and responsive to several environmental factors. This work reports the changes in bacterial communities associated with dominant pioneer trees [Tabebuia rosea and Handroanthus chrysanthus [(Bignoniaceae)] during tropical forest recovery chronosequence in the Mayan forest in Campeche, Mexico. Massive 16S sequencing approach leads to identifying phylotypes associated with rhizosphere, bulk-soil, or recovery stage. Lotka-Volterra interactome modeling suggests the presence of putative regulatory roles of some phylotypes over the rest of the community. Our results may indicate that bacterial communities associated with pioneer trees may establish more complex regulatory networks than those found in bulk-soil. Moreover, modeled regulatory networks predicted from rhizosphere samples resulted in a higher number of nodes and interactions than those found in the analysis of bulk-soil samples.

Climate change and coastal development pressures have intensified the need for shoreline protection. Nature-first approaches that use natural habitats, particularly marshes, are being promoted globally as ecologically-beneficial alternatives to grey infrastructure. The ability of these novel shorelines to provide nursery habitat to blue crab, an ecologically and economically important species along the Atlantic and Gulf coasts of the United States, has not been fully evaluated. We quantified the abundance and size distribution of juvenile blue crabs from a chronosequence of living shorelines (created fringing marshes) spanning 2 to 16 years in age (since construction) compared with paired natural fringing marshes in the southern Chesapeake Bay. Both created and natural fringing marshes are being used by blue crabs as primary nursery habitats. Despite interannual differences in abundance, young blue crabs (≤ 2.5 cm carapace width) were observed in similar densities and sizes at living shoreline and natural marshes. The age of the living shoreline was not related to blue crab density, indicating that even the youngest living shorelines (2 years) were providing nursery habitat. Young juvenile blue crabs were more abundant in more isolated marshes and in marshes inundated for longer periods of time each tidal cycle, which may be evidence for habitat-limitation. Our results provide evidence that juvenile blue crabs are comparably using natural and created fringing salt marshes as primary nursery habitat. Although the relative importance of salt marshes as young crab nursery habitat is not fully understood and likely varies by system, the value of marshes within a suite of available structural nursery habitats may increase under a changing climate. The potential for living shorelines to serve as nursery habitat for an economically important species may provide additional incentive to implement these climate adaptation strategies.

Lichens are presently regarded as stable biotopes, small ecosystems providing a safe haven for the development of a diverse and numerous microbiome. In this study, we conducted a functional diversity assessment of the microbial community residing on the surface and within the thalli of Leptogium puberulum, a eurytopic cyanolichen endemic to Antarctica, employing the widely used Biolog EcoPlates which test the catabolism of 31 carbon compounds in a colorimetric respiration assay. Lichen thalli occupying moraine ridges of differing age within a proglacial chronosequence, as well as those growing in sites of contrasting nutrient concentrations, were procured from the diverse landscape of the western shore of Admiralty Bay in Maritime Antarctica. The L. puberulum bacterial community catabolized photobiont- (glucose-containing carbohydrates) and mycobiont-specific carbon compounds (d-Mannitol). The bacteria also had the ability to process degradation products of lichen thalli components (d-cellobiose and N-acetyl-d-glucosamine). Lichen thalli growth site characteristics had an impact on metabolic diversity and respiration intensity of the bacterial communities. While high nutrient contents in lichen specimens from “young” proglacial locations and in those from nitrogen enriched sites stimulated bacterial catabolic activity, in old proglacial locations and in nutrient-lacking sites, a metabolic activity restriction was apparent, presumably due to lichen-specific microbial control mechanisms.

In arctic and boreal ecosystems, ground bryophytes play an important role in regulating carbon (C) exchange between vast belowground C stores and the atmosphere. Climate is changing particularly fast in these high-latitude regions, but it is unclear how altered precipitation regimes will affect C dynamics in the bryosphere (i.e. the ground moss layer including senesced moss, litter and associated biota) and the closely associated upper humus layer, and how these effects will vary across contrasting environmental conditions. Here, we set up a greenhouse experiment in which mesocosms were assembled containing samples of the bryosphere, dominated by the feather moss Hylocomium splendens, and the upper humus layer, that were collected from across a boreal forest chronosequence in northern Sweden which varies strongly in nutrient availability, productivity and soil biota. We tested the effect of variation in precipitation volume and frequency on CO2 exchange and dissolved organic carbon (DOC) export, and on moss growth. As expected, reduced precipitation volume and frequency lowered net CO2 efflux, DOC export and moss growth. However, by regulating moisture, the lower bryosphere and humus layers often mediated how precipitation volume and frequency interacted to drive C dynamics. For example, less frequent precipitation reduced moss growth only when precipitation volume was low. When volume was high, high moisture content of the humus layer helped avoid moss desiccation. Variation in precipitation regime affected C cycling consistently in samples collected across the chronosequence, despite large environmental variation along the sequence. This suggests that the bryosphere exerts a strong buffering effect on environmental variation at the forest floor, which leads to similar responses of C cycling to external perturbations across highly contrasting ecosystems. As such, our study indicates that projected increases in droughts and ground evapotranspiration in high-latitude regions resulting from climate change will consistently reduce C losses from moss-dominated ecosystems.

Microorganisms have a major influence on soil biogeochemical processes and vegetation establishment. However, their long-term succession patterns and short-term turnover are not well-understood in artificial forest ecosystems. The aim of the present study was to investigate the effects of stand ages and seasons on soil bacterial community in a chronosequence of Chinese Pinus massoniana plantations, in 3, 19, and 58-year-old plots. Soil physicochemical properties were measured in three stand ages between two seasons (dry-rainy). The soil bacterial community composition was determined by 16S rRNA Illumina HiSeq sequencing. The results showed that soil bacterial community diversity and structure significantly differed among three stand ages, but was not different between two seasons. The diversity of soil bacterial community increased with an increase in stand age. Proteobacteria, Acidobacteria, and Actinobacteria were the dominant phyla in the three stands. The soil bacterial community structure in all the stands was influenced by soil pH, available phosphorus content, and litter phosphorus content. With the accumulation of available phosphorus, the relative abundance of Acidobacteria decreased, while that of Proteobacteria increased. These shifts suggested that dominant microbial communities transitioned from oligotrophic to copiotrophic with increasing stand age. Extending rotation periods could increase soil bacterial diversity, and in turn help improving soil quality of P. massoniana plantations.

The decomposition of coarse woody debris (CWD) affects the energy flow and nutrient cycling in forest ecosystems. Previous studies on CWD have focused on the input, decomposition, reserve dynamics, and CWD functions, but coarse woody debris decomposition is complex and the results from different regions vary considerably. It is not clear which factors affect decay rate (k), especially at different decomposition stages. In this study, a single-exponential decay model was used to analyze the characteristics of CWD decomposition in Larix gmelinii forests over the 33 years following a fire in the Greater Khingan Mountains. The results show that the decay rate of coarse woody debris was positively correlated to decay class. The average decomposition rate was 0.019, and 41 years and 176 years are needed for a 50% and 95% mass loss, respectively. CWD nutrient content, density, and water content could explain the variance in the decay rate (~ 42%) of the decay factors such as amount of leaching, degree of fragmentation, respiration of the debris, and biotransformation, and varied significantly between different decay classes. Using the space–time substitution method, this study arranged the coarse woody debris of different mortality times to form a 33 year chronosequence which revealed the decomposition process. It was concluded that the decay rate was mainly explained by structural component of the debris and its nitrogen and water contents. This paper quantifies the indicators affecting CWD decay to explain the decomposition process.

The present study aimed to assess the diversity of saprobic fungi associated with three decompositional stages of Hevea brasiliensis (Wild. ex Juss.) Mull. Arg. leaves along a chronosequence of plantations. The modified surface disinfection culture method was followed for isolation of saprobic fungi from three different phases (G1, G2 and G3) of decomposing leaves. The result revealed 51 species of fungi isolated from three plantations. There was an increasing trend of number of species along a chronosequence of plantations. Cladosporium sp. was isolated from all the phases of decomposition from all the three plantations. There is an increasing trend in diversity and a decreasing trend in dominance of fungi along a chronosequence of plantations. Overall, higher number of species and maximum diversity was recorded in G2 (Hʹ = 3.61) among the decompositional phases. The study suggests increase in diversity along a chronosequence of plantations and the similarity index suggests distinct fungal occurrence pattern in the leaf litter along a chronosequence of plantations.

We examined how restoration affects the structure and function of grasslands belowground by relating changes in the morphology and architecture of root systems of dominant plants to the structure of soil food webs. We measured changes in root traits of dominant plants (Bouteloua gracilis and Pascopyrum smithii) and related them to the diversity and feeding structure of soil nematodes across a restoration chronosequence in a mixed-grass prairie in Grasslands National Park, Saskatchewan, Canada. Root architecture and morphology of dominant grasses changed with restoration, and soil food webs in recently restored prairies centred around resources provided by roots. In contrast, food webs in a native prairie centred around the decomposition of soil organic matter and plant litter. Our study demonstrates that changes in root traits following restoration can cascade through soil foodwebs, altering the function of restored prairies. Our study also highlights that the diversity and structure of soil nematodes can reflect changes in root traits of dominant plants. However, traits that generalize the whole root system may be insufficient to explain the causal relationship between root feeding nematodes and their resources.

Seagrass meadows are carbon (C) sinks and nitrogen (N)-limited ecosystems that experience degradation from climate change and anthropogenic stressors, including prop-scarring disturbances by boating vessels. To better understand the variability in C and N pools of undisturbed seagrass soils and the recovery of these pools following boat propeller scarring, we quantified organic carbon (Corg) and N pools within the top 1 m of soils in undisturbed Thalassia testudinum seagrass beds of the Lower Laguna Madre (LLM), Texas, USA—a sub-tropical, uniquely hypersaline, and heavily used recreational boating lagoon—and used a chronosequence approach to compare these undisturbed soil pools to those in different aged prop scars (1–3, 4–6, 7–9, and 10+ years). We found that undisturbed soils stored 108.41 ± 2.93 and 6.65 ± 0.26 Mg (megagram) ha−1 of Corg and N, respectively, in the top 1 m, with ~ 30% of these pools stored within the top 20 cm. Scarring impacted these shallow, organic-rich pools, exposing higher bulk density (BD) mineral soils with lower %Corg and %N. Consequently, young scars (1–3 years) had significantly lower %Corg and %N values in the top 20 cm of soil compared with undisturbed soils, but the greater BD offset these changes, leading to no differences in total Corg and N pools in the top 1 m between scarred and undisturbed soils. Scars 10+ years had similar %Corg, %N, and BD soil characteristics to undisturbed soils, producing similar Corg and N pools in both upper and lower soil horizons. These findings indicate that recovery of Corg and N pools of prop-scarred seagrass soils within T. testudinum beds of the LLM will likely recover a decade or more post-disturbance. Our findings contribute to the growing global database on seagrass C and N storage and demonstrate the rate at which seagrass meadows recover post-disturbance.

Global warming leads to deglaciations in high-elevation regions, which exposes deglaciated soils to microbial colonization. Disparity in year-to-year successional patterns of bacterial community and influencing factors in freshly deglaciated soils remain unclear.We explored the abundance of bacterial 16S rRNA gene and community succession in deglaciated soils along a 14-year chronosequence after deglaciation using qPCR and Illumina sequencing on the Tibetan Plateau. The results showed that the abundance of bacterial 16S rRNA gene gradually increased with increasing deglaciation age. Soil bacterial community succession was clustered into three deglaciation stages, which were the early (zero-year old), transitional (1–7 years old) and late (8–14 years old) stages. A significantly abrupt bacterial community succession occurred from the early to the transitional stage (P < 0.01), while a mild succession (P = 0.078) occurred from the transitional to the late stage. The bacterial community at the early and transitional stages were dominated by Proteobacteria, while the late stage was dominated by Actinobacteria. Less abundant ( < 10%) Acidobacteria, Gemmatimonadetes, Verrucomicrobia, Chloroflexi, Planctomycetes, unclassified bacteria dominantly occurred in the transition and late stage and Cyanobacteria in the early stage. Total organic carbon (24.7%), post deglaciation age (21%), pH (16.5%) and moisture (10.1%) significantly contributed (P < 0.05) to the variation of bacterial community succession. Our findings provided a new insight that short time-scale chronosequence is a good model to study yearly resolution of microbial community succession.

Coastal wetlands can sequester large amounts of organic carbon (OC), providing an additional motivation for the preservation and restoration of these ecosystems. In Tampa Bay (Florida, USA), created coastal wetlands are initially planted with Spartina spp., but nearly all sites naturally transition into mangrove forests. It was hypothesized that carbon storage in the created wetlands would increase with site age due to the accumulation of soil organic carbon and replacement of salt marsh vegetation with mangrove forests. Mature, mangrove-dominated sites had higher total organic carbon stocks (138.7 ± 13.8 Mg C ha−1) than middle-aged transitional sites (85.6 ± 25.5 Mg C ha−1) or young salt marshes (34.5 ± 7.7 Mg C ha−1). Mature sites consisted of tall trees (> 130 cm tall) and scarce salt marsh vegetation. Transitional sites contained mangrove scrubs (30–130 cm tall) and seedlings (

The Walker and Syers model predict that phosphorus (P) availability decreases with time leading to a final stage known as retrogression. We tested the validity of the Walker and Syers model in the Canary Islands, a soil chronosequence ranging from 300 years to 11 million years under recurrent episodes of atmospheric dust-containing P inputs. In particular, we compared our results with those from the volcanic soil chronosequences described in the Hawaii Islands and in Arizona, as they share key biological and/or geological characteristics. In three islands of the Canarian Archipelago, we selected 18 independent sites dominated by mature Pinus canariensis forests and grouped them into six age classes. For each site, soil samples were analyzed for known proxies of soil nitrogen (N), P and cations availability. We also analyzed the P. canariensis needles for N, P and cation contents. We found tendencies similar to those observed in other soil chronosequences: maximum N and P concentrations at intermediate ages and lower P concentrations in the older soils. The nutrient dynamics suggested that the older sites may indeed be approaching the retrogression stage but at lower rates than in other similar chronosequences. Differences from other chronosequences are likely due to the drier Canarian climate, the higher P deposition rates originating from the nearby Sahara Desert and the top soil horizon studied. Our results confirm the validity of the Walker and Syers model for the Canary Islands despite the influence that the high P deposition rates and the seasonally dry climate may have on soil development and P pools in P. canariensis ecosystems.

Phytoliths are siliceous substances that are abundant within intercellular spaces and inside cells of numerous types of plants. During the formation of phytoliths, between 0.2 and 5.8% of organic carbon (C) can be occluded within the phytoliths. Phytolith-occluded C (PhytOC) in terrestrial ecosystems is a stable C sink and can be distributed in organic matter that is not strongly associated with soil minerals (LFOM) or that is strongly associated with mineral particles (forming organo-mineral complexes) (HFOM). We (1) investigated the impact of plantation age and soil depth on the size of the PhytOC pool and its distribution in soil physical fractions in Moso bamboo (Phyllostachys pubescens) forests; and (2) explore the relationship among phytoliths and PhytOC (and their fractions) concentrations and the soil properties. We used a chronosequence approach by sampling 5-, 10-, 20-, 50-, and 100-year-old Moso bamboo stands to examine the effect of plantation age on PhytOC storage and its distribution between the LFOM and HFOM pools. Our results showed that PhytOC concentration and the concentration of PhytOC in LFOM and HFOM increased with increasing stand age in the topsoil (0–30 cm) but not in the subsoil (30–100 cm). Long-term planting of Moso bamboo forests increased the soil PhytOC pool size, as well as the LFOM- and HFOM-PhytOC fractions. The LFOM- and HFOM-PhytOC concentrations were positively correlated with soil organic C concentrations. The HFOM-PhytOC concentration was positively correlated with that of water-soluble silicon. We conclude that the increasing bamboo plantation age will promote PhytOC storage in the bulk soil and physical fractions in subtropical China. Management practices that increase PhytOC input and decrease PhytOC output should be developed in the future to increase PhytOC storage in bamboo plantations.

Understanding faunal responses to habitat restoration is important in assessing restoration success. We investigated occupancy and abundance of snakes at Nachusa Grasslands, a large‐scale grassland restoration in the midwestern United States. Using artificial cover objects, we sampled within a chronosequence of 12 units converted from row‐crop agriculture 2–25 years before the start of our study. Recaptures of marked snakes revealed that movement distances differed among species in accordance with differences in body size, being least in Dekay's Brownsnakes, intermediate in the Plains Gartersnakes and Common Gartersnakes, and greatest in Eastern Foxsnakes. Consistent with this result, occupancy increased with restoration age in Dekay's Brownsnakes but was unrelated to restoration age in the three larger, more mobile species. Similarly, abundance increased with restoration age in Dekay's Brownsnake but was unrelated to restoration age in other species. The Smooth Greensnake, another small‐bodied snake with limited mobility, and an Illinois species of greatest conservation need, was not detected at Nachusa Grasslands. Given detection probabilities observed during a parallel study at a nearby large grassland‐dominated preserve, we infer that the Smooth Greensnake is truly absent from Nachusa Grasslands. Taken together, our results demonstrate that establishment of faunal components following restoration may be time‐dependent with more sedentary species colonizing only slowly (e.g. Dekay's Brownsnakes) or not at all (e.g. Smooth Greensnakes). These results emphasize the need to clearly identify faunal restoration goals and the means to achieve them.

This study aimed to determine the responses of soil bacteria and fungi to plant species diversity and plant family composition (PFC) following secondary succession on former farmland (FL). Illumina sequencing of 16S rRNA and ITS genes was used to determine soil microbial communities along a chronosequence of FL left abandoned for 0, 10, 20, 30, 40, and 50 years on the Loess Plateau. Soil properties, plant diversity, and PFC were also investigated. Fungal communities were dominated by Ascomycota and Basidiomycota. Fungal diversity and Ascomycota abundance increased with time, while Basidiomycota abundance decreased. The fungal diversity and dominant phyla were related to the increasing levels of plant species diversity and evenness with succession. Bacterial diversity first increased and then decreased as succession proceeded, peaking at 30 years. Bacterial communities transitioned from Actinobacteria to Proteobacteria dominance during the first 30 years, after which Actinobacteria was dominant. Plant family composition exerted indirect effects on the diversity and dominant phyla of bacterial communities, mainly through direct effects on soil organic carbon and total nitrogen content. Bacterial diversity and Proteobacteria abundance were higher at Leguminosae- and Gramineae-dominant succession stages, but lower in Compositae-dominant plots; Actinobacteria showed the opposite result. Plant species diversity and evenness might be the key drivers for shaping fungal communities, but bacteria are influenced more by changes in PFC and abiotic soil nutrient levels during succession.

Vegetation restoration is widely recognized as a way to improve soil organic carbon (SOC) stock. However, whether these recovered carbons are stable is yet largely uncertain. Thus, we determined the sequestration and stability of SOC in soils with three different types (Caragana korshinskii (CA) aged for 10, 20, 36, and 47 years, Hippophae rhamnoides (HR) aged for 5, 10, 20, and 30 years, and Robinia pseudoacacia (RP) aged for 5, 10, 20, 37, and 56 years) to compare their SOC sequestration and stability in different depths in this study. The SOC content, SOC stock, very labile fraction of oxidizable carbon (C1), labile fraction of oxidizable carbon (C2), and carbon management index (CMI) in 0–30 cm depths of the three types increased over the chronosequence. The SOC stocks increased by 1.40–3.19 Mg ha⁻¹ in CA during the 47‐year restoration, by 5.76–10.01 Mg ha⁻¹ in HR during the 30‐year restoration and by 1.88–8.93 Mg ha⁻¹ in RP during the 56‐year restoration, respectively, in 0–30 cm depths. The carbon stability index (SI) in 0–10 cm depth of CA, 0–30 cm depths of HR, and 0–50 cm depths of RP decreased with recovery time. Over the recovery time, SOC content, SOC stock, CMI, and SI were lower than those of nature forest (NF aged more than 100 years) in all restored sites at the later stage of recovery. SOC sequestration decreased, but its stability increased, with the soil depths. Overall, HR had a higher SOC sequestration rate and lower SI (0–30 cm) than CA and RP. Our results revealed that although the SOC sequestration appears enhanced over the restoration, but the SOC stability becomes lower, so that the recovery of these site to the level of NF may meet difficulties in this semiarid Loess Hilly Region.

In recently deglaciated soils, microbial organisms drive soil transformations by increasing carbon (C) and nitrogen (N) pools while depleting available phosphorous (P), thus improving plant colonization and soil development. However, the rate of soil development can vary in response to local environmental conditions that affect microbial abundance and activity. In this contribution we use observational and experimental approaches to evaluate the interplay between soil biogeochemical features and microbial abundance and function after approximately seventy years of soil development in the forefield of the Exploradores Glacier that is located at the northernmost end of the Northern Patagonian Ice Field. Our findings suggest that after approximately seventy years of soil development, microbial abundance and soil C and N accumulation increase with soil age, soil bulk density and pH decreased, and microbial activity measured as soil chlorophyll a and nifH gene abundance increased. In turn, decomposition increased with fungal abundance, showing higher values in the late stages of soil development where the soil C:N ratio was higher and soil pH was lower. Overall, biogeochemical changes along this chronosequence followed the predicted pattern, with gradual increases in soil nutrients and microbial abundance, in addition to decomposition processes.

Biological soil crusts (BSCs) are widely considered critical for soil fertility in arid ecosystems. However, how microbial communities regulate the C and N cycles during BSC succession is not well understood. We utilized GeoChip 5.0 to analyze the functional potential of bacteria and fungi involved in the C and N cycles of BSCs along a 61-year revegetation chronosequence. The normalized average signal intensities of different functional genes involved in C and N metabolism in 61-year-old BSCs were significantly different from those in younger BSCs and most functional gene subcategories and the corresponding dominant functional populations were derived from bacterial rather than fungal communities. Most C degradation genes (dominated by the starch-degrading gene amyA) were derived from Actinobacteria (mainly Streptomyces) in bacteria, but Ascomycota (mainly Aspergillus) was the key population for lignin degradation (dominated by the phenol oxidase gene) during BSC succession. N cycle genes involved in denitrification (such as narG, nirK/S, and nosZ) and N fixation (nifH) were mainly derived from Unclassified Bacteria, whereas genes involved in ammonification (ureC) were mainly derived from Streptomyces. Moreover, redundancy analysis showed that soil biogeochemical properties were closely related to bacterial and fungal functional gene structures during BSC succession. These findings indicate that bacteria play a crucial role in the regulation of C and N cycles during BSC succession in arid ecosystems, while fungi perform supplementary degradation of lignin, and these communities can successfully stimulate an increase in C and N metabolism in soil during the later successional stages of BSCs.

Understanding soil microbial element limitation and its relation with the microbial community can help in elucidating the soil fertility status and improving nutrient management of planted forest ecosystems. The stand age of a planted forest determines the aboveground forest biomass and structure and underground microbial function and diversity. In this study, we investigated 30 plantations of Camellia oleifera distributed across the subtropical region of China that we classified into four stand ages (planted 60 years age). Enzymatic stoichiometry analysis showed that microbial metabolism in the forests was mainly limited by C and P. P limitation significantly decreased and C limitation slightly increased along the stand age gradient. The alpha diversity of the soil microbiota remained steady along stand age, while microbial communities gradually converged from scattered to clustered, which was accompanied by a decrease in network complexity. The soil bacterial community assembly shifted from stochastic to deterministic processes, which probably contributed to a decrease in soil pH along stand age. Our findings emphasize that the stand age regulated the soil microbial metabolism limitation and community assembly, which provides new insight into the improvement of C and P management in subtropical planted forest.

Background and aims: Teak (Tectona grandis L.f.) is one of the most promising timber species in the tropical and subtropical areas in south China. Arbuscular mycorrhizal (AM) fungi play a crucial role in promoting plant growth, enhancing plant stress resistance and sustaining healthy ecosystem. However, little is known about mycorrhizal status in teak plantations. This study aims to characterize the dynamics of AM fungal communities in the rhizosphere of teak plantations at different ages. Methods: Fine roots and rhizosphere soils in teak plantations at varying ages (22, 35, 45 and 55 years old), and the adjacent native grassland without teak plantation (CK) were assessed for soil properties, root mycorrhizal colonization, and AM fungal communities using amplicon sequencing technology. Results: With the increase of stand ages, AM fungal colonization rates in teak fine root samples and spore density in the rhizosphere were increased linearly; catalase and ammonium nitrogen in the rhizosphere soil were also increased; soil organic carbon, total phosphorous (P), acid phosphatase, available potassium (AK) and available phosphorus (AP) were first increased and then declined at 55 years old stands. In total, 12 and 9 AM fungal genera were detected in the rhizosphere soil and in teak root samples, respectively. The OTUs data revealed that AM fungi presented in the rhizosphere soil and roots were mostly belonged to Glomus. In the rhizosphere soil, the relative abundance of Glomus was first increased and then declined, while Gigaspora and Scutellospora were declined, although the diversity and richness of AM fungi showed no significant variation with stand ages. In roots, the composition of AM fungal community and its diversity did not change with stand ages, whereas the richness was increased with the stand age. The monte carlo permutation test indicated that AK, nitrate nitrogen and C/P ratio largely explained the shift in the composition of AM fungal community in the rhizosphere soil. Conclusion: The results demonstrated that AM fungal communities in the rhizosphere soil and teak roots shifted across plantation ages. These changes were largely attributed to the age-induced variation in soil properties.

The total dissolved organic matter (DOM) content of soil changes after vegetation transformation, but the diversity of the underlying chemical composition has not been explored in detail. Characterizing the molecular diversity of DOM and its fate enables a better understanding of the soil quality of monoculture forest plantations. This study characterized the chemodiversity of soil DOM, assessed the variation of the soil microbial community composition, and identified specific linkages between DOM molecules and microbial community composition in soil samples from a 100-year chronosequence of Chinese fir monoculture plantations. With increasing plantation age, soil total carbon and dissolved organic carbon first decreased and then increased, while soil nutrients, such as available potassium and phosphorus and total nitrogen, potassium, and phosphorus, increased significantly. Lignin/carboxylic-rich alicyclic molecule (CRAM)-like structures accounted for the largest proportion of DOM, while aliphatic/proteins and carbohydrates showed a decreasing trend along the chronosequence. DOM high in H/C (such as lipids and aliphatic/proteins) degraded preferentially, while low-H/C DOM (such as lignin/CRAM-like structures and tannins) showed recalcitrance during stand development. Soil bacterial richness and diversity increased significantly as stand age increased, while soil fungal diversity tended to increase during early stand development and then decrease. The soil microbial community had a complex connectivity and strong interaction with DOM during stand development. Most bacterial phyla, such as Acidobacteria, Chloroflexi, and Firmicutes, were very significantly and positively correlated with DOM molecules. However, Verrucomicrobia and almost all fungi, such as Basidiomycota and Ascomycota, were significantly negatively correlated with DOM molecules. Overall, the community of soil microorganisms interacted closely with the compositional variability of DOM in the monoculture plantations investigated, both by producing and consuming DOM. This suggests that DOM is not intrinsically recalcitrant but instead persists in soils as a result of simultaneous consumption, transformation, and formation by soil microorganisms with extended stand ages of Chinese fir plantations.

Soil resident bacterial communities are involved in myriad key processes that facilitate ecosystem functionality. However, our understanding of their diversity and compositional dynamics following ecological restoration, and the main factors that influence them, remains inadequate. We employed a chronosequence (0–1, 5–6, 11–12, 20–24, and 28–34 years since restoration) to examine the dynamic changes in soil bacterial diversity and composition, as well as the essential factors that affected them since the cessation of anthropogenic disturbances (e.g., recurring fuelwood collection and domestic animal grazing), and used old-growth forests as a reference in the subtropical forests of Eastern China. We found that soil bacterial diversity increased with time since restoration, and community compositions shifted toward being similar to those of old-growth forests over time. However, the recovery process was prolonged since the significant difference in soil bacterial diversity between degraded and restored forests did not occur until after 24 years since restoration. Multivariate analysis using multiple-response permutation procedures indicated the soil bacterial communities were compositionally distinct between degraded, restored, and old-growth forests. An analysis of indicator species revealed that forests at the early stage of recovery times supported Rokubacteria and Actinobacteria, while old-growth forests were distinguished by Chlamydiae. Soil carbon, microbial biomass carbon, soil water content, and microbial biomass nitrogen recovered over time and became increasingly akin to those of old-growth forest soils. Soil carbon, soil water content, and soil pH could explain 84.5% of the variations in bacterial community dynamics following restoration. Overall, this study revealed a prolonged recovery process of the community structures of soil bacteria (e.g., diversity, composition, and phylum abundance) following restoration, which was coupled with changes in soil properties in subtropical forests of China.

Afforestation can modify terrestrial carbon (C) pools, some of which are primarily fixed in the plant dead biomass and then incorporated into the microbial dead biomass. Soil microorganisms exert a critical role in C flow and potentially influence C balance through the degradation of plant and microbial dead biomass. Here, we compared sites along a 45-year Robinia pseudoacacia (RP) afforestation chronosequence on the Loess Plateau of China. Subsequently, the trends of microbial carbohydrate-active enzymes (CAZyme) and their responses to the decomposition of dead biomass of different origins were studied using metagenomics. The results show that soil microbial CAZyme families, which degrade the plant- and microbial-derived components, significantly increased after afforestation, with a significant peak at the 20-year site. The dominant bacterial phyla (i.e., Actinobacteria, Proteobacteria, and Acidobacteria) mineralized C sources from plant and microbial biomass components through their corresponding CAZyme families. Moreover, the increased abundance of CAZymes involved in the decomposition of plant-derived components (e.g., cellulose, hemicellulose, and lignin) contributed to the formation of C pools. In the case of microbial-derived components, the abundance of CAZymes encoding the bacterial-derived components (peptidoglycan) was larger than that encoding fungal-derived components (chitin and glucans) and was more associated with microbial metabolic activity (qCO2 and Cmic: Corg ratio), indicating a higher investment of bacterial-derived components for microbial carbon turnover following afforestation. Overall, our study compares plant- and microbial-derived biomass to illustrate the differential contributions of dead biomass to C accumulation and confirms the importance of the bacterial community and derived biomass for C turnover following afforestation.

Most ecosystem functions attributed to earthworms are mediated by their internal microbiomes, and these are sensitive to disturbances in the external environment. However, few studies have focused on the response of the earthworm gut microbiome to soil chronosequence. Here, we used 16S rRNA high-throughput sequencing and high-throughput quantitative PCR to investigate the variations in bacterial communities and functional gene abundance in earthworm (Lumbricina sp.) guts and upland soils under 700 years of cultivation. Our results indicated that 700 years of upland cultivation significantly shaped bacterial communities and increased functional traits of microbes in earthworm guts, which were more sensitive to cultivation age compared to the surrounding soils. The earthworm gut bacterial community changed rapidly over the first 300 years of cultivation and then changed slowly in the following centuries. Along with the cultivation age, we also observed that the earthworm gut microbiota was successive towards a copiotrophic strategy (e.g., Xanthobacteraceae, Nocardioidaceae, Hyphomicrobiaceae, and Bacillaceae) and higher potential functions (e.g., ureC, nirS, nosZ, phoD, and pqqC). Furthermore, canonical correspondence analysis further revealed that soil pH, C:N ratio, soil organic carbon, and total nitrogen were key abiotic drivers shaping earthworm gut bacterial communities. Taken together, this study reveals the succession of bacterial communities and potential functions in earthworm guts within 700 years of upland cultivation, which may provide a broader space for us to rationally exploit and utilize the interactions between soil and earthworm gut microbiotas to benefit the soil nutrient cycling process.

Early colonization and succession of soil microbial communities are essential for soil development and nutrient accumulation. Herein we focused on the changes in pioneer prokaryotic communities in rhizosphere and bulk soils along the high-elevation glacier retreat chronosequence, the northern Himalayas, Tibetan Plateau. Rhizosphere soils showed substantially higher levels of total organic carbon, total nitrogen, ammonium, and nitrate than bulk soils. The dominant prokaryotes were Proteobacteria, Actinobacteria, Acidobacteria, Chloroflexi, Crenarchaeota, Bacteroidetes, and Planctomycetes, which totally accounted for more than 75% in relative abundance. The dominant genus Candidatus Nitrososphaera occurred at each stage of the microbial succession. The richness and evenness of soil prokaryotes displayed mild succession along chronosequene. Linear discriminant analysis effect size (LEfSe) analysis demonstrated that Proteobacteria (especially Alphaproteobacteria) and Actinobacteria were significantly enriched in rhizosphere soils compared with bulk soils. Actinobacteria, SHA_109, and Thermoleophilia; Betaproteobacteria and OP1.MSBL6; and Planctomycetia and Verrucomicrobia were separately enriched at each of the three sample sites. The compositions of prokaryotic communities were substantially changed with bulk and rhizosphere soils and sampling sites, indicating that the communities were dominantly driven by plants and habitat-specific effects in the deglaciated soils. Additionally, the distance to the glacier terminus also played a significant role in driving the change of prokaryotic communities in both bulk and rhizosphere soils. Soil C/N ratio exhibited a greater effect on prokaryotic communities in bulk soils than rhizosphere soils. These results indicate that plants, habitat, and glacier retreat chronosequence collectively control prokaryotic community composition and succession.

Aim The importance of restoring ecosystem functions to native systems that have been degraded, damaged or destroyed is increasingly recognised. Yet few studies have measured the effect of restoration efforts on ecosystem functioning or the functional diversity (FD) that underpins it. Here we assessed change in FD of restored assemblages one to 25 years after the onset of post-mine restoration. Location Northern Jarrah (Eucalyptus marginata Donn ex Sm.) Forest bioregion of southwestern Australia. Methods Functional richness, evenness, divergence and dispersion were derived from five plant functional traits relevant to community reassembly. Effects of three explanatory variables (i.e. age, year restoration was initiated, and time since fire) on six response variables (i.e. four FD indices, species richness, and compositional similarity to nearby reference forest) were analysed using linear mixed models for a data set with repeated measures of plots through time (n = 810 plots), and linear models for a subset of one-time measures of different aged assemblages (i.e. space-for-time approach; n = 490 plots). Results Functional evenness and functional dispersion increased with age, while functional divergence and functional richness decreased with age. Functional dispersion increased with time since fire, while functional richness decreased with time since fire. Species richness decreased with age, but at 25 years, species richness was comparable to that observed in reference forest. In contrast, similarity showed no relationship with age of restored forest, and at 25 years, similarity of restored forest to reference was low compared with similarity of reference forest to itself. Three of four FD indices had not reached those of reference jarrah forest 25 years after restoration had been initiated. Conclusions Reassembly of FD suggests importance of environmental filtering and high functional redundancy. A longer time frame may be needed to assess FD of restored assemblages, and in the meantime, species richness is not an adequate surrogate of FD.

Polar regions provide an ideal environment to investigate the succession of bacterial communities. In the present study, we investigated the bacterial diversity and community structure of the Midtre Lovenbreen glacier foreland ecosystem using a chronosequence approach. The alpha diversity indices of the samples collected from recently deglaciated sites comprised of less diverse, yet abundant bacterial groups compared to the samples from comparatively older sites, where the bacterial diversity was very rich and evenly distributed. Bacterial phyla viz. (a) Proteobacteria (14–44.58%) comprising classes of alpha- and gamma Proteobacteria along with (b) Actinobacteriota (8.8–33.8%) were predominantly distributed across the samples, while phyla Bacteroidota (up to 21%) was mainly distributed in the recently deglaciated samples and phyla Acidobacteriota (up to 24%) in deglaciated samples which were older. Bacterial families (Sulfurovaceae and Sulfurimonadaceae) affiliated with bio weathering of rocks for their energy metabolism was also detected in the present study from the recently deglaciated region. Bacterial genera belonging to Luteolibacter (up to 10.25%), Polaribacter (up to 12.32%), Acidimicrobium (6%) and Sulfitobacter (13.6%) were highly abundant in the recently deglaciated samples, while Candidatus_Udaeobacter (up to 17%) and RB41 (up to 10.5%) were found to be abundant in the older stage samples. Linear discriminant analysis revealed 121 Operational Taxonomic Units that could be attributed to the differences in the community diversity between the two groups. Among the analyzed environmental variables, pH, Cr, Cd and Ca significantly contributed to the differences in the bacterial community structure.

Forest activity for timber purposes in Mexico is based on the harvesting of various pine species, one of the mostly used is Pinus patula. Ectomycorrhizal (ECM) fungi increase seedling survival, and, therefore, their use ensures the success of forest plantations. Reforestation with native pine species increases the diversity of ectomycorrhizal fungi. The aim of this work was to compare species diversity associated with stand age and to determine the changes in the fungal community at the morphotype level. The study was carried out in a commercial plantation, with stands aged 2, 5, 7, 9, 14 to 25 and > 50 years. Mycorrhizal roots were collected at the beginning of the rainy season and grouped according to their morphology, and the diversity index, percentage of abundance and relative frequency were determined. Twenty-eight morphotypes were determined, including two of the Laccaria genus, two of Tomentella and one of Cortinarius. There is a positive correspondence between the number of morphotypes and the age of the pines. Mature stands (14-25 and >50 yr-old) were more diverse than young (2 to 9 yr-old) stands, with the exception of the 7 year-old stand, which showed similar diversity values to the mature stands. Probable morphotypes of Laccaria spp. were more abundant and frequent in the youngest stand (33 %). Throughout the chronosequence, unique and shared morphotypes were recorded. This work requires further research; however, it shows that stand age is an important factor in the composition of the ECM fungal communities and a key element in forest management plans.

Elucidating dynamics of soil microbial communities after disturbance is crucial for understanding ecosystem restoration and sustainability. However, despite the widespread practice of swidden agriculture in tropical forests, knowledge about microbial community succession in this system is limited. Here, amplicon sequencing was used to investigate effects of soil ages (spanning at least 60 years) after disturbance, geographic distance (from 0.1 to 10 km) and edaphic property gradients (soil pH, conductivity, C, N, P, Ca, Mg, and K), on soil bacterial and fungal communities along a chronosequence of sites representing the spontaneous succession following swidden agriculture in lowland forests in Papua New Guinea. During succession, bacterial communities (OTU level) as well as its abundant (OTU with relative abundance > 0.5%) and rare (n = 12) or rare (n = 653) for bacteria than fungi (abundant = 6, rare = 5), indicating bacteria were more tolerant than fungi to environmental gradients. Rare taxa showed higher successional dynamics than abundant taxa, and rare bacteria (mainly from Actinobacteria, Proteobacteria, Acidobacteria, and Verrucomicrobia) largely accounted for bacterial community development and niche differentiation during succession.

Grazing exclusion may be used to promote the recovery of disturbed ecosystems. A promising way for the evaluation of its effectiveness is through the monitoring of key biological groups, particularly those more responsive to disturbance and playing key roles in ecosystem functioning. Ants have been used as ecological indicators as they are abundant, diverse and sensitive to environmental changes. Here, we aimed to evaluate changes in ant taxonomic and functional structure and diversity, using functional groups, along a post-grazing succession in a Mediterranean oak woodland and to understand which environmental variables drive them. The post-grazing succession comprised a chronosequence of grazing excluded sites for 8, 12 and 18 years and a grazed control site. We found that ant species richness, functional structure and diversity increased with years since grazing exclusion: Generalist/Opportunist and the Hot Climate specialists increased in the 18 years grazing excluded site, while the Cryptic Species group increased in the 12 years grazing excluded site. Yet, their responses were not linear over time. Time since grazing exclusion and vegetation structure explained differences in ant taxonomic and functional structure and diversity. The Invasive/Exotic group dominated in all sites, except in the longest excluded site, where it occurred in the lowest proportion. The invasive Argentine ant dominated the grazed site, where it may have led to ant taxonomic and functional homogenization. Our results suggest that the time and changes in habitat structure may favour the recovery of ant biodiversity, although the presence of the invasive Argentine ant species may have slowed it down. This study was supported by Fundac¸a˜o para a Cieˆncia e a Tecnologia within the Fellowship PD/BD/114364/2016 and the project FCT-PTDC/AAG-GLO/0045/2014. info:eu-repo/semantics/publishedVersion

Restoration interventions such as revegetation are globally-important to combat biodiversity declines and land degradation. However, restoration projects are generally poorly monitored because current approaches to monitoring are limited in their ability to assess important components of biodiversity, such as belowground microbial diversity. Since soil bacterial communities mediate many belowground ecosystems processes and represent substantial biodiversity in their own right, bacteria are important components to monitor during ecosystem restoration. High-throughput amplicon sequencing (DNA metabarcoding) has been put forward as a potential cost-effective, scalable and easy-to-standardise partial solution to restoration’s monitoring problem. However, its application to restoration projects has to date been limited. Here, we used DNA metabarcoding of bacterial 16S rRNA gene from soil DNA to explore community differences across a 16-year restoration chronosequence. The bacterial composition in the oldest revegetation sites was comparable to the remnant sites. Proteobacteria and Acidobacteria were significantly higher in relative sequence abundance, while Actinobacteria was significantly lower, with time since revegetation. Classes Alphaproteobacteria and Acidobacteria were indicative of remnant and the oldest revegetation sites, while Deltaproteobacteria and Rubrobacteria were characteristic of younger revegetation sites. Changes in the soil physical and chemical characteristics associated with revegetation appear to shape bacterial community structure and composition. These findings provide evidence that revegetation can have positive effects on belowground microbial communities, and help demonstrate that the soil bacterial community can be restored towards its native state by revegetation, which may be useful in restoration monitoring.

Phosphorus (P) is a limiting nutrient for plant growth in most forest ecosystems. In response to P deficiency, plants alter root exudates (organic acids, phosphatases, and protons) to increase P bioavailability in soils. However, little is known about how bioavailable P pools (soluble-P, exchangeable-P, hydrolysable-P, and ligand-P extracted by CaCl2, citric acid, enzyme mixture, and HCl solution, respectively) change with stand age, especially for plantation forests. We selected a chronosequence of second-generation Chinese fir [Cunninghamia lanceolata (Lamb.) Hook., Taxodiaceae] plantations with increasing age including 3, 8–11, 16, 20, 25, 29, and 32 years. We measured total P and four bioavailable P pools in organic (O) and mineral horizons, and rhizosphere soil, as well as root exudates in the rhizosphere, litter biomass on the forest floor, and annual P uptake. Soluble-P, exchangeable-P, and ligand-P in the O horizon increased with stand age due to litter accumulation. Exchangeable-P and ligand-P in mineral soil decreased with stand age because of the increasing annual P uptake that depleted inorganic P. Exchangeable-P and ligand-P in the rhizosphere increased with stand age because the decrease in pH and citric acid concentration led to phosphate being more strongly bound to Fe and Al oxyhydroxides. Consequently, the trees’ ability for P mobilization decreased with stand age, but the P recycling within the tree increased. Continuous mineralization of hydrolysable-P by acid phosphatase replenished inorganic P pools, especially in solution. The progressive incorporation of P in the biological cycle with increasing tree age indicates that extending rotation periods might be an appropriate measure to increase P supply.

The activity and composition of soil microbial communities during natural restoration have been widely studied, but their succession rates and metabolic functions remain unknown, especially with respect to soil depth. Here, we examined a chronosequence of grasslands that were subjected to grazing exclusion for 0, 10, 15, 25, and 35 years (y) on the semiarid Chinese Loess Plateau, and we investigated the succession rate and the metabolic functions of microbial communities at different soil layers (0–10, 10–20, 20–40, and 40–60 cm). Microbial succession rates represented by temporary turnover were assessed using the slope of linear regressions, based on log-transformed microbial community similarity over time. Metagenome functional content was predicted from the sequence data using PICRUSt. Most soil physicochemical properties, microbial biomass, enzyme activity, bacterial diversity, and carbohydrate and amino acid metabolism increased as a result of grazing exclusion but decreased as a function of soil depth. Bacterial communities showed a transition from fast-growing copiotrophic taxa (Proteobacteria) to slow-growing oligotrophic taxa (Actinobacteria) with soil depth. Notably, a higher temporary turnover rate of bacterial communities in the topsoil than in the subsoil layer indicated a decreased successional rate of bacterial communities along the soil depth profile. Nitrospirae had the highest succession rate, followed by Gemmatimonadetes, Actinobacteria, Proteobacteria, and Bacteroidetes. Variance partitioning and redundancy analysis demonstrated that soil physico-chemical properties had a greater effect on bacterial composition and metabolic functions than plant characteristics (aboveground and root biomasses), and that soil C and N levels and bulk density were the most influential factors. Our study indicated a positive effect of long-term grazing exclusion on the activities, diversity, and functions of the microbial community, and revealed a decreasing successional rate of bacterial communities with soil depth.

The prolonged absence of fire in Oregon white oak (Quercus garryana) woodlands and savannas of the Pacific Northwest has resulted in substantial conifer encroachment over the past century. Use of low intensity prescribed burns often lacks sufficient intensity to kill larger encroached trees, requiring alternative approaches. In the Bald Hills region of Redwood National Park, managers have implemented girdling treatments to kill Douglas-fir (Pseudotsuga menziesii) over the past two decades with the objective of recovering remnant oaks and restoring historical woodland area. We surveyed 258 girdled Douglas-fir to examine the effectiveness of girdling treatments to create snags and the impacts of girdling on tree regeneration and fuel recruitment over a 17 year time since girdling chronosequence. Girdling was successful in killing 91% of the treated Douglas-fir independent of the method used (axe or chainsaw). Larger trees with a low girdle width-to-tree diameter ratio tended to survive girdling. Trees with a girdle width-to-tree diameter ratio ≥1 were most effective at killing trees. Snags generated through girdling decayed over time but did not significantly reduce in height over the time period examined. Bird activity was observed on 19% of snags across the chronosequence but 88% of 10 y old snags had signs of bird foraging. Fine woody fuel loading and fuelbed depths were potentially elevated 7 years after treatment but did not persist through the time period examined. Regeneration of Douglas-fir and oaks were highly variable and did not seem to be clearly linked to girdling activity. Our results indicate that girdling is a highly effective treatment to kill Douglas-fir and aid restoration of Oregon oak woodlands with limited negative impacts on surface fuel hazards or regeneration.

Pest abundance on urban trees often increases with surrounding impervious surface. Gloomy scale (Melanaspis tenebricosa Comstock; Hemiptera: Diaspididae), a pest of red maples (Acer rubrum L.; Sapindales: Sapindaceae) in the southeast United States, reaches injurious levels in cities and reduces tree condition. Here, we use a chronosequence field study in Raleigh, NC, to investigate patterns in gloomy scale densities over time from the nursery to 13 yr after tree planting, with a goal of informing more efficient management of gloomy scale on urban trees. We examine how impervious surfaces affect the progression of infestations and how infestations affect tree condition. We find that gloomy scale densities remain low on trees until at least seven seasons after tree planting, providing a key timepoint for starting scouting efforts. Scouting should focus on tree branches, not tree trunks. Scale density on tree branches increases with impervious surface across the entire studied tree age range and increases faster on individual trees that are planted in areas with high impervious surface cover. There is a lag between the onset of pest infestations and a decline in tree condition, indicating that gloomy scale management should begin prior to a visible decline in tree condition. Our results inform management of gloomy scale in cities.

Our goal was to better understand tree growth and photosynthetic responses to variations in plant available water and elucidate the role of the inverse texture effect in snow dominated montane forests. We measured tree ring carbon isotope composition and annual growth over a 31-year record for lodgepole pine (Pinus contorta Douglas ex Loudon) growing on three different-aged glacial till surfaces in Wyoming, USA. Soils of different ages developed on till surfaces from three separate glaciation events were significantly different in clay content and distribution with depth; maximum clay content at depth ranged from 19 to 20% on the two youngest till surfaces, but was as high as 36% on the oldest till surface. Ring growth was lowest at the youngest till sites, and only on these coarse-textured soils was growth positively correlated with annual maximum snow water equivalent (SWEmax). Δ13C was highest for trees at these young till sites, suggesting that hydraulic conductivity and stomatal conductance is comparatively high during growth periods on these coarse-textured soils. Taken together, we found that age of glacial till and related soil texture differences strongly influenced tree-ring growth and Δ13C response of lodgepole pine to interannual variation in precipitation and drought severity, but responses did not support an inverse texture effect in these semi-arid forest systems.

Invasion of Spartina alterniflora has been reported to modify carbon (C) cycling processes and pools of the native salt marsh ecosystems. However, it remains unclear how the invasion age and expansion direction of S. alterniflora impact the soil organic carbon (SOC) dynamics. In this study, by considering the continuous invasion of S. alterniflora into mudflat (seaward) and native species Suaeda salsa (landward) salt marshes over a period of 20 years chronosequence, we quantify their impacts on SOC dynamics along the coastal salt marshes of Yancheng National Nature Reserve of China, based on the extensive field sampling and remote sensing data. The results showed that (1) S. alterniflora invasion increased SOC concentration and density, which averaged 8.39 g C kg−1 and 0.0085 g C cm−3 seaward and 6.26 g C kg−1 and 0.0065 g C cm−3 landward, respectively; (2) soil organic carbon showed a significantly positive relationship with total nitrogen (TN), salinity, and water content and a negative relationship with pH and bulk density for S. alterniflora landward expansion. For seaward expansion, it showed a similar relationship, but there are higher correlations with soil properties except an insignificant relationship with pH; and (3) soil organic carbon and carbon accumulation rate are significantly higher in seaward than in landward. However, for landward expansion, soil organic carbon concentration keeps increasing linearly with invasion time, while for seaward expansion, it increased to a maximum in 11 years of invasion and then decreased. Our results showed that it is very important to assess the effects of invasion on SOC dynamics in salt marsh ecosystems by considering both the expansion direction and invasion age.

Forest conversion can affect the diversity and community structure of soil bacteria and fungi. However, little is known about the impact of forest conversion on aboveground-belowground linkages and associated nutrient cycling. To address this research gap, we investigated the aboveground and belowground recovery, the specific responses of bacterial and fungal communities and the associated nutrient cycling in the conversion from artificial Chinese fir forests to broad-leaved conifer-mixed forests at 5-yr-, 10-yr- and 25-yr-old stands after selective logging. Bacterial and fungal community structures were analyzed using high-throughput sequencing of the 16S rRNA and ITS genes. Six microbial enzyme activities involved in the cycling of C, N and P were studied. Our results showed that the aboveground forest structure was recovering towards native evergreen broad-leaved forest after selective logging. The alpha-diversity of fungal community was significantly increased across the chronosequence of logging, but the alpha-diversity of bacterial community was not. Fungal community composition and structure changed during forest conversion, whereas the bacterial community showed slight changes in unique taxa. Neither bacterial nor fungal community structures changed towards the similar pattern as native evergreen broad-leaved forest across 25 years. These results indicated that fungi were more susceptible to forest conversion than bacteria. Furthermore, compared with bacteria, fungi were more strongly affected by soil properties, such as NH4+-N, pH, AK and TOC. Structural equation modeling indicated that fungi had strong impacts on C-, N- and P-cycling but that bacteria only affected C-cycling. Overall, the fungal community may play a more important role in the aboveground-belowground linkages and C-, N-, and P-cycling compared with the bacterial community during forest conversion.

Long-term soil chronosequences are valuable model systems for investigating pedogenesis and investigating the process of element coupling. Here, we assessed the coupling relationships among C, Fe, and Fe-reducing bacteria (Anaeromyxobacter, Geobacter, and Shewanella) in a paddy soil chronosequence of approximately 50 to 1000 years. Soils of the chronosequence originated from tidal marsh under nearly identical landscape and climate conditions. During 1000 years of rice cultivation, soil organic carbon (SOC) contents in surface horizons (0–20 cm) increased from 10.4 to 21.8 g kg−1. In contrast, total Fe contents declined from 59.6 to 45.1 g kg−1 during the initial 50 years of paddy rice cultivation and then further decreased at a low rate of 0.004 g kg−1 soil year−1 (equivalent to 10 kg ha−1 soil year−1). Organically complexed Fe oxides (Fep) increased from 219 to 642 mg g−1 with increasing time of pedogenesis, but free total Fe oxides (Fed) and amorphous Fe oxides (Feo) declined at early stage of soil development, followed by a slow accumulation at later stages of the chronosequence. Gene copy numbers of Anaeromyxobacter and Geobacter increased from 4.6 × 105 and 3.6 × 106 copies g−1 to 3.8 × 107 and 3.6 × 107 copies g−1 dry soil with continuous paddy rice cultivation, while concurrently Shewanella gene abundance decreased gradually from 4.5 × 105 to 9.3 × 104 copies g−1 dry soil. Using structural equation modeling (SEM), different coupling relationships were observed among C, Fe, and Fe-reducing bacteria for the first 300 years of paddy chronosequence and thereafter. Overall, all Fe-reducing bacteria did not show consistent variation. With the stable microbial community and iron oxide fractions, the microbially mediated dissimilatory coupling relationship between C and Fe becomes simple during 1000 years of paddy soil development.

Invertebrate biomonitoring can reveal crucial information about the status of restoration projects; however, it is routinely underused because of the high level of taxonomic expertise and resources required. Invertebrate DNA metabarcoding has been used to characterize invertebrate biodiversity but its application in restoration remains untested. We use DNA metabarcoding, a new approach for restoration assessment, to explore the invertebrate composition from pitfall traps at two mine site restoration chronosequences in southwestern Australia. Invertebrates were profiled using two cytochrome oxidase subunit 1 assays to investigate invertebrate biodiversity. The data revealed differences between invertebrate communities at the two mines and between the different age plots of the chronosequences. Several characteristic taxa were identified for each age within the chronosequence, including springtails within the youngest sites (Order: Collembola) and millipedes within the oldest and reference sites (Order: Julida). This study facilitates development of a molecular “toolkit” for the monitoring of ecological restoration projects. We suggest that a metabarcoding approach shows promise in complementing current monitoring practices that rely on alpha taxonomy.

Afforestation is an important strategy to increase soil organic carbon (SOC) stocks and stabilize soils against degradation and erosion. While the area under afforestation has increased globally during the last 20 years, the dynamics of SOC accumulation due to afforestation are still poorly known, as it cannot be directly compared to that in cropland. The goals of this study were: i) to investigate the dynamics of SOC accumulation after afforestation on the Loess Plateau; ii) to determine SOC contents and distribution in density fractions and aggregates most strongly affected by afforestation; and iii) to analyze the relationships between old and new SOC in relation with afforestation periods. A chronosequence of forest plots aged 1, 5, 12 (with Chinese pine, Pinus tabulaeformis Carr.) and 30 years (with white poplar, Populus alba L.) were selected within the large scale “Grain for Green” project. A maize field nearby was chosen as a control, which represents the land use prior to afforestation. At each location, soils were sampled at depths of 0–10 and 10–30 cm, respectively and aggregates were fractionated into 2000 μm sizes, which were subsequently separated into light (ρ 1.85 g cm−3) density fractions. SOC content was generally higher in afforested soils than in cropland and increased with stand age. The mean SOC accumulation rate was 0.11 g C kg−1 year−1 for the 0–10 cm layer of the 30-year-old forests, whereas the maximum rate was found for 5-year-old forest at 0.24 g C kg−1 year−1. For each period of afforestation, the maximum SOC content was recorded in the macroaggregates. The C turnover of the light fraction (calculated based on δ13C of SOC) peaked in the large macroaggregates and ranged from 21 to 23 years). Whereas SOC turnover in the heavy fraction, peaked in the microaggregates at a relatively longer period of 46 to 70 years. We conclude that the initial SOC accumulation under afforestation occurs mainly in the macroaggregates, with a faster turnover compared with microaggregates. During the first 30 years of afforestation, the SOC accumulation and stabilization is ongoing mainly in the upper 10 cm, while the C sequestration in 10 to 30 cm depth needs much longer time.

Made available in DSpace on 2019-10-06T16:34:10Z (GMT). No. of bitstreams: 0 Previous issue date: 2019-06-15 We conducted this study to understand the dynamics of revegetation by examining the levels of mineral nitrogen (NO3− and NH4+) in soil and the capacity of nitrogen use by the principal species growing in secondary forest in central Amazonia. For this, we measured the nitrate and ammonium content of soil, leaves and xylem sap, nitrate reductase activity of the leaves and free amino acid contents of the xylem sap in five tree species (Vismia cayennensis, Vismia japurensis, Bellucia dichotoma, Laetia procera and Goupia glabra) over a chronosequence during recovery after pasture abandonment at two seasons. Soil ammonium was higher in the dry season and nitrate higher in the wet season and increased these with pasture abandonment age. V. japurensis, B. dichotoma and G. glabra decreased foliar ammonium due to pasture abandonment in the dry season and foliar ammonium increased in L. procera in the wet season. V. japurensis and V. cayennensis showed a decrease in nitrate reductase activity, while B. dichotoma and L. procera showed an increase. Xylem nitrate decreased in L. procera and B. dichotoma in the dry and wet seasons, respectively, and ammonium increased only in V. japurensis and V. cayennensis in the wet. Xylem arginine increased in all plant species after a period of pasture abandonment (except B. dichotoma). Tree species growing in pasture abandoned areas didn’t show the same pattern of use of nitrogen, and this can be important in order to understand the nitrogen metabolism of trees in the Amazon region during forest restoration. Laboratory of Plant Physiology and Biochemistry National Institute for Amazonian Research (INPA), Ave. André Araújo, 2936, Aleixo Institute of Biological Sciences and Health - ICBS Federal University of Alagoas State University of Roraima - UERR Department of Plant Biology Institute of Biology University of Campinas – UNICAMP, PO Box 6109 Department of Biology and Animal Science - UNESP Faculty of Engineering of Ilha Solteira Department of Biology and Animal Science - UNESP Faculty of Engineering of Ilha Solteira

Information on pathways and rates of decomposition of coarse woody debris (CWD) from one of the dominant boreal tree species – Siberian larch (Larix sibirica Ledeb.) – is scarce. We examined presence and distribution of internal decay in its living trees and decomposition rates in an 88-year chronosequence of logs in an old-growth mesic mixed European boreal forest. Fifty-two percent of the trees started decaying prior to death. Butt or stem rot was caused by white- and brown-rot biotrophic fungi in almost equal proportions. Those trees lost on average 29% of their initial wood mass. The mean decomposition rate of wood as related to initial conditions was 0.007 yr−1 for wood with initial biotrophic decay and 0.010 yr−1 for wood with saprotrophic decay. Bark lost its mass and volume faster – at a rate of 0.056 yr−1. The rate of carbon (C) loss for the whole stem was 0.024 yr−1 in wood affected by saprotrophic fungi and 0.007 yr−1 when the tree was affected by biotrophic fungi. When calculating C losses due to decomposition, separating bark and wood with different C concentrations and decomposition patterns as well as the rate of biotrophic and saprotrophic decay enables us to refine estimates of the role of Siberian larch CWD in C cycling. Further research is still needed to resolve uncertainties around the role of fungal communities and the origins and decomposition rates of butt rots and stem rots in living trees of Siberian larch, as well as the distribution patterns of these fungi and decomposition processes in individual trees and at the ecosystem level.

Although Scots pine (Pinus sylvestris L.) is one of the most economically important European timber trees, there is still insufficient data about biomass variability and its relationships with stand features. Therefore, we aimed: (1) to develop biomass models for different aboveground biomass components at tree and stand levels, as well as biomass conversion and expansion factors (BCEFs), (2) to assess the relationships between stand parameters and aboveground biomass and BCEFs and (3) to compare stand biomass obtained using BCEFs with models developed based on stand parameters (age, basal area, stand volume and mean height). Using a chronosequence (3–117 years old) of 120 plots within even-aged pure Scots pine stands and 791 sample trees, we prepared tree- and stand-level allometric equations and BCEFs for aboveground biomass determination. Using stand age, density, stand volume and mean height, we prepared a set of models for biomass and BCEFs. Our study indicated that stand biomass increased with increasing height, volume and age and with decreasing stand density during stand development. Stand-level models provided better accuracy than BCEF-based models. The best predictors of biomass were stand volume and mean height. We also confirmed highly dynamic increases in stand biomass and decreases in BCEFs in the youngest phase of stand growth and relative stabilization in later stages of Scots pine stand development. The models obtained may be used in large-scale forest biomass inventories and increase our knowledge of carbon sequestration in forest biomass.

The Jurien Bay dune chronosequence in south‐western Australia’s biodiversity hotspot comprises sites differing in nutrient availability, with phosphorus (P) availability declining strongly with increasing soil age. We have explored the exceptionally high photosynthetic P‐use efficiency (PPUE) of Proteaceae in this region, triggering the question what the PPUE of co‐occurring species in other families might be along the Jurien Bay chronosequence. We explored how traits associated with PPUE, photosynthetic nitrogen (N)‐use efficiency (PNUE) and leaf respiration might converge along the chronosequence, and whether Proteaceae and non‐Proteaceae species differ in leaf traits associated with nutrient use. Seven to 10 species were sampled at three sites differing in nutrient availability (ranging from N‐ to P‐limited). Measurements of leaf light‐saturated photosynthesis and dark respiration were integrated with measurements of total N and P concentration in both mature and senesced leaves, and leaf mass per unit area (LMA). Contrary to what is known for other chronosequences, rates of photosynthesis and respiration did not decrease with increasing soil age and LMA along the Jurien Bay chronosequence. However, they increased when expressed per unit leaf P. Both N and P were used much more efficiently for photosynthesis on nutrient‐poor sites, in both Proteaceae and non‐Proteaceae species. Proteaceae had the fastest rate of photosynthesis per unit leaf P, followed by species that preferentially allocate P to mesophyll cells, rather than epidermal cells. Synthesis. Our results show that with declining soil P availability, photosynthetic P‐use efficiency of all investigated species from different families increased. Plants growing on the oldest, most nutrient‐impoverished soils exhibited similar rates of CO₂ exchange as plants growing on more nutrient‐rich younger soils, and extraordinarily high photosynthetic P‐use efficiency. This indicates convergence in leaf traits related to photosynthetic nutrient use on severely P‐impoverished sites.