41 results on '"Akihiro Kijima"'
Search Results
2. Physical eradication of small planktonic crustaceans from aquaculture tanks with cavitation treatment
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Yoshihisa Kurita, Akihiro Kijima, and Ikuo Chiba
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0106 biological sciences ,animal structures ,biology ,business.industry ,010604 marine biology & hydrobiology ,fungi ,04 agricultural and veterinary sciences ,Aquatic Science ,Plankton ,biology.organism_classification ,01 natural sciences ,Crustacean ,Fishery ,Sea cucumber ,Aquaculture ,Cavitation ,Apostichopus japonicus ,040102 fisheries ,0401 agriculture, forestry, and fisheries ,business ,Agronomy and Crop Science ,Copepod ,Invertebrate - Abstract
Small planktonic crustaceans cause serious problems in invertebrate aquaculture tanks through predatory damage or competition for food resources with the aquaculture species. In sea cucumber aquaculture, they can cause the mass loss of culturing jeveniles for releasing, which is a major obstacle to stable seedling production. In this study, we developed a novel method for eradicating small planktonic crustaceans using a ‘cavitation’ shock wave. Cavitation can cause significant damage to the surfaces of metallic devices, such as propellers and pumps, via the shock waves that occur with the disruption of micro/nano-bubbles. Therefore, we subjected planktonic crustaceans, mainly copepods, to cavitation using a micro/nano-bubble generator. The cavitation treatment reduced the planktonic crustaceans in the aquaculture tanks by 63.3% compared with the control. Comparison of the body size distribution of crustaceans indicated that cavitation treatment kills crustaceans of all sizes equally. We also assessed the negative effects of the micro/nano-bubbles, which are a byproduct of cavitation treatment, on the aquaculture species. We exposed juvenile sea cucumbers (Apostichopus japonicus) and sea urchins (Strongylocentrotus intermedius) to micro/nano-bubbles, and then examined their survival rate four days later; all individuals were intact and uninjured. These results suggest that cavitation treatment is an effective method for controlling planktonic crustaceans without using chemicals.
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- 2017
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3. Relationship between the efficiency of planktonic crustacean eradication from aquaculture tanks and cavitation conditions
- Author
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Yoshihisa Kurita, Ikuo Chiba, and Akihiro Kijima
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0301 basic medicine ,biology ,business.industry ,04 agricultural and veterinary sciences ,Aquatic Science ,Plankton ,biology.organism_classification ,Crustacean ,Fishery ,03 medical and health sciences ,030104 developmental biology ,Aquaculture ,Apostichopus japonicus ,040102 fisheries ,0401 agriculture, forestry, and fisheries ,business ,Copepod - Published
- 2018
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4. Stability of genetic diversity in an intertidal goby population after exposure to tsunami disturbance
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Minoru Ikeda, Akihiro Kijima, Shun Hayasaka, Wataru Iwasaki, and Shotaro Hirase
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0301 basic medicine ,geography ,education.field_of_study ,Genetic diversity ,geography.geographical_feature_category ,Ecology ,biology ,Population ,Goby ,Intertidal zone ,Aquatic Science ,biology.organism_classification ,03 medical and health sciences ,030104 developmental biology ,Disturbance (ecology) ,Effective population size ,Epicenter ,Archipelago ,education ,human activities ,Ecology, Evolution, Behavior and Systematics - Abstract
Massive tsunami disturbances have potentially detrimental effects on genetic diversity and effective population size of coastal marine species, and evaluating these effects can be useful for devising conservation strategies for coastal marine environments. Local populations of the intertidal goby Chaenogobius annularis, which are distributed on scattered rocky beaches of the Japanese Archipelago, show demographic independence without overlapping generations, making this an ideal species with which to study the effects of tsunami disturbance on genetic diversity. Some of these populations were affected by the tsunami of the 2011 off the Pacific coast of Tohoku Earthquake. Here, we investigated the change in genetic diversity of a local population of this species, which was located close to the epicenter of the earthquake, across the cohorts before and after the tsunami and evaluated the impact of the tsunami disturbance. Genetic diversity was maintained after the tsunami, and no change in the effective population size was observed. Our results suggest that the tsunami disturbance has had no marked impact on the genetic diversity of C. annularis.
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- 2016
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5. Improvement of mitochondrial DNA haplotyping in Japanese flounder populations using the sequences of control region and ND2 gene
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Kenzo Yoseda, Masashi Sekino, Daiki Ando, Akihiro Kijima, Takuma Sugaya, Daisuke Katamachi, and Minoru Ikeda
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0106 biological sciences ,0301 basic medicine ,Genetics ,Mitochondrial DNA ,biology ,Haplotype ,Aquatic Science ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Olive flounder ,03 medical and health sciences ,030104 developmental biology ,Gene - Published
- 2016
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6. Genetic diversification of intertidal gastropoda in an archipelago: the effects of islands, oceanic currents, and ecology
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Tetsuro Sasaki, Satoshi Chiba, Daishi Yamazaki, Do Van Tu, Akihiro Kijima, Osamu Miura, and Minoru Ikeda
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0106 biological sciences ,0301 basic medicine ,Species complex ,geography ,geography.geographical_feature_category ,Ecology ,biology ,Range (biology) ,fungi ,Aquatic Science ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Genetic divergence ,03 medical and health sciences ,030104 developmental biology ,Cladogenesis ,Genetic structure ,Archipelago ,Biological dispersal ,Monodonta ,Ecology, Evolution, Behavior and Systematics - Abstract
Marine organisms with a planktonic larval stage can passively disperse long distance and are thus expected to have a wider distribution range and lower geographic variation. However, recent molecular phylogenetic studies have revealed that they often display a clear geographic genetic structure or even form a geographically fragmented species complex. These genetic divergences can be facilitated by the presence of dispersal barriers such as oceanic currents and/or by the limitation of suitable habitats. Using comprehensive phylogenetic analyses, we evaluate how such dispersal barriers shape genetic divergence and speciation in the intertidal snail genus Monodonta. Our phylogenetic analysis revealed various patterns of cladogenesis in Monodonta in East Asia. Genetic segregation between the Japanese and Ryukyu Archipelagos are detected in M. labio and M. perplexa perplexa. However, the relationship of geographical border and lineages does not correspond to those two because they show different habitat preference. M. labio distributed in the Japanese mainland is separated by the boundary corresponding to the point from which oceanic currents split into different directions. In contrast, species inhabiting various environments such as M. confusa are not genetically separated in Japan. In the peripheral oceanic Ogasawara Islands, two Monodonta species form each endemic lineage, although these two underwent different colonization processes to the islands. These findings suggest that the genus Monodonta has been genetically diversified around Japan, probably due to its correlations with dispersal ability, oceanic current, and habitat preferences. These factors may be effective causes for diversification of marine gastropods with a planktonic stage.
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- 2017
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7. Detection of a highly divergent population structure and identification of a cryptic species in the East Asian dogwhelk Nucella heyseana
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Manami Kanno, Yusuke Mae, and Akihiro Kijima
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Species complex ,Ecology ,Nucella heyseana ,biology ,Evolutionary biology ,Population structure ,Identification (biology) ,East Asia ,Aquatic Science ,biology.organism_classification ,Ecology, Evolution, Behavior and Systematics - Published
- 2013
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8. Population genetic structure and gene flow in the Japanese sea cucumber Apostichopus japonicus across Toyama Bay, Japan
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Akihiro Kijima, Yuji Yamazaki, Manami Kanno, and Taha Soliman
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education.field_of_study ,biology ,Range (biology) ,Ecology ,Population ,Aquatic Science ,biology.organism_classification ,Gene flow ,Sea cucumber ,Apostichopus japonicus ,Genetic structure ,Biological dispersal ,education ,Bay - Abstract
The Japanese sea cucumber Apostichopus japonicus has a pelagic-lecithotrophic larva. Here, we clarify larval dispersal among Japanese sea cucumber populations by describing the levels of distinctiveness and gene flow among red and green variant populations of A. japonicus across Toyama Bay using 11 polymorphic microsatellite markers. Samples of Japanese sea cucumber populations were collected from three localities (Noto, Shinminato, and Uozu) around Toyama Bay. Geographically separated populations of red and green variants were determined to be genetically distinct, supported by phylogenetic analysis and the distinctiveness range values of pairwise multilocus estimates of F ST. Contemporary migration analyses indicated that the majority of estimated migration events occurred within A. japonicus populations comprised of only either red or green variants. In a historical gene flow analysis, two best-fit models (n-island and stepping stone models) showed circulation for the gene migration in Toyama Bay among red variant populations. Our results provide useful information on the genetic structure of Japanese sea cucumber populations and will be helpful for genetic conservation and fisheries management of sea cucumber populations in Toyama Bay.
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- 2012
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9. Phylogeography of the intertidal goby Chaenogobius annularis associated with paleoenvironmental changes around the Japanese Archipelago
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Akihiro Kijima, Minoru Ikeda, Shotaro Hirase, and Manami Kanno
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Mitochondrial DNA ,Phylogeography ,geography ,geography.geographical_feature_category ,Ecology ,Archipelago ,Goby ,Intertidal zone ,Aquatic Science ,Biology ,biology.organism_classification ,Ecology, Evolution, Behavior and Systematics - Published
- 2012
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10. Evidence of the restricted gene flow within a small spatial scale in the Japanese common intertidal gobyChaenogobius annularis
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Minoru Ikeda, Manami Kanno, Akihiro Kijima, and Shotaro Hirase
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education.field_of_study ,Mitochondrial DNA ,Ecology ,biology ,Population ,Goby ,Population genetics ,Aquatic Science ,biology.organism_classification ,Gene flow ,Evolutionary biology ,Microsatellite ,Biological dispersal ,education ,Ecology, Evolution, Behavior and Systematics ,Local adaptation - Abstract
Elucidating the scale of gene flow among populations is an important challenge for understanding the ecological dynamics and local adaptation of marine organisms. We assessed whether gene flow is restricted even at a small spatial scale in the Japanese common intertidal goby Chaenogobius annularis, using highly polymorphic DNA markers, involving the mitochondrial DNA (mtDNA) control region and 15 microsatellite DNA (msDNA), because past ecological studies have suggested low dispersal ability for rocky intertidal fishes. We found significant heterogeneities between four neighboring local populations by both mtDNA and msDNA analyses. In addition, no genetic heterogeneity was detected by either method across generations within a population; it was considered that such genetic differentiation is retained across generations and that the gene flow of this species is restricted to within a radius of a few kilometers. This is the first report showing a clear genetic subdivision in rocky intertidal fish.
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- 2012
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11. Detection of regional allozyme divergence in the rocky intertidal goby Chaenogobius annularis
- Author
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Minoru Ikeda, Akihiro Kijima, Shotaro Hirase, and Manami Kanno
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education.field_of_study ,geography ,geography.geographical_feature_category ,Ecology ,Population ,Goby ,Intertidal zone ,Biology ,biology.organism_classification ,Pacific ocean ,Divergence ,Genetic differentiation ,Genetic divergence ,Peninsula ,education ,geographic locations ,Ecology, Evolution, Behavior and Systematics - Abstract
Genetic differentiation in the intertidal goby Chaenogobius annularis was studied using allozyme markers. Samples were collected from six localities along the coasts of Japanese islands and the Korean Peninsula. Six out of 13 loci showed allelic variation in at least one population. Although the predominant alleles of 12 loci were the same among all populations, Mdh-1 showed clear differences among the populations located along the coasts of the Pacific Ocean and the Sea of Japan. These two possible geographic groups, the Pacific Ocean and the Sea of Japan groups, were characterized by diagnostic alleles of Mdh-1, namely Mdh-1 100 and Mdh-1 70.
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- 2012
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12. Effects of Inbreeding Depression in Pacific AbaloneHaliotis Discus Hannai
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Akihiro Kijima and Toshimasa Kobayashi
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Larva ,Abalone ,biology ,Ecology ,Outbreeding depression ,Inbreeding depression ,Haliotis discus ,Zoology ,Veliger ,Aquatic Science ,Mating ,biology.organism_classification ,Inbreeding - Abstract
To demonstrate inbreeding depression in various traits of Pacific abalone Haliotis discus hannai, 12 inbreeding full-sib families (brother-sister mating) and 13 outbreeding full-sib families were produced by factorial mating using the parents from two full-sib families. All 25 full-sib families were reared for 158 days after settlement, and 8 of the inbred and outbred full-sib families were reared until 3 y 4 mo of age. Inbreeding depression traits between inbred and outbred crosses were compared. No significant differences in fertilization rate, hatchability, and veliger survival rate were observed between the inbreeding and outbreeding crosses. Deformity rate in veliger larvae from the inbred crosses was significantly higher than that among the outbred crosses (t-test, P < 0.01). Significantly lower survival rates were observed in the inbreeding crosses at 109 days after settlement (t-test, P < 0.01) and between 1 y 4 mo-old and 3 y 4 mo-old crosses (t-test, P < 0.05). Mean increases in shell l...
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- 2010
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13. Inbreeding depression traits in Pacific abalone Haliotis discus hannai by factorial mating experiments
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Akihiro Kijima, Qi Li, Choul-Ji Park, and Toshimasa Kobayashi
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biology ,Abalone ,Ecology ,Outbreeding depression ,Haliotis discus ,Inbreeding depression ,Zoology ,Veliger ,Aquatic Science ,Mating ,biology.organism_classification ,Mating system ,Inbreeding - Abstract
‘Inbreeding depression’ may be an avoidable phenomenon for abalone culture. However, only a few studies have been carried out on inbreeding depression. In the present study, using six families produced in 1994, a factorial mating system including inbreeding and outbreeding was constructed in order to demonstrate inbreeding depression traits of the Pacific abalone. In total, 24 inbreeding and 21 outbreeding crosses were produced during three years (1999–2001) and these off-spring were reared for approximately one year. Significant differences in fertilization rate and growth were not observed between inbreeding and outbreeding corsses. However, the deformity rate of veliger larvae was always higher in inbreeding crosses than that of outbreeding crosses in all experiments. Moreover, a significantly high deformity rate was observed in some full-sib families of inbreeding. Alternatively, the survival rates of inbreeding crosses were much lower than for outbreeding crosses after about 4 months and one year in two rearing localities. These results indicate that inbreeding depression is observed in the traits of deformity rate and survival, but not in fertilization rate nor growth in the first generation of a full-sib family of the Pacific abalone.
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- 2006
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14. A novel oocyte maturation arresting factor in the central nervous system of scallops inhibits serotonin-induced oocyte maturation and spawning of bivalve mollusks
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Kazuo Inaba, Keiichiro Kyozuka, Makoto Osada, Akihiro Kijima, and Toru Tanabe
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Central Nervous System ,Ovulation ,Serotonin ,medicine.medical_specialty ,media_common.quotation_subject ,Patinopecten yessoensis ,Ovary ,Dinoprost ,Endocrinology ,Internal medicine ,Hemolymph ,medicine ,Extracellular ,Animals ,Seawater ,media_common ,biology ,Oocyte activation ,biology.organism_classification ,Oocyte ,Ganglia, Invertebrate ,Cell biology ,Pectinidae ,medicine.anatomical_structure ,Scallop ,Oocytes ,Intercellular Signaling Peptides and Proteins ,Calcium ,Female ,Animal Science and Zoology ,Serotonin Antagonists - Abstract
Serotonin (5-hydroxytriptamine; 5-HT) is a major neurotransmitter that triggers oocyte maturation and sequential spawning in bivalve mollusks. A proteinous and heat-labile substance that proved to be a novel inhibitor of 5-HT-induced egg release from ovarian tissue was found in the cerebral and pedal ganglia (CPG) of the scallop Patinopecten yessoensis. The same inhibitory activity was also observed in the proteinous fraction from the supernatant of hemolymph. Histological observation demonstrated that the novel inhibitor prevented 5-HT from inducing oocyte maturation in the scallop ovary and that no prostaglandin F2alpha (PGF2alpha) inhibited 5-HT-induced oocyte maturation, although PGF2alpha strongly prohibited 5-HT-induced egg release through the gonoduct from ovarian tissue. The novel inhibitor from the scallop CPG also prohibited 5-HT-induced oocyte maturation of other bivalve species as well as scallops. The novel inhibitor, mediated through a receptor mechanism on oocyte membranes, blocked extracellular Ca2+ uptake into oocytes, which was observed in 5-HT-induced oocyte maturation. It is suggested that the novel inhibitor with a molecular mass of 60 kDa, named oocyte maturation arresting factor, which appears to be a universal substance for bivalve species, may be transported from the CPG to the ovary via hemolymph and may prohibit 5-HT-induced oocyte maturation due to the interference of extracellular Ca2+ influx into oocytes, eventually resulting in the inhibition of spawning. On the other hand, it seems that PGF2alpha inhibits 5-HT-induced transport of mature eggs through the gonoduct.
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- 2006
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15. Microsatellite analysis of gynogenetic families in the Pacific oyster, Crassostrea gigas
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Akihiro Kijima and Qi Li
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Genetics ,Oyster ,biology ,Aquatic Science ,Pacific oyster ,biology.organism_classification ,Chiasma ,symbols.namesake ,Meiosis ,biology.animal ,Mendelian inheritance ,symbols ,Microsatellite ,Ploidy ,Inbreeding ,Ecology, Evolution, Behavior and Systematics - Abstract
Five families of gynogenetic diploid Pacific oyster (Crassostrea gigas) were induced by inhibiting the second polar body in meiotic cell division of eggs fertilized with UV-irradiated sperm. Segregation patterns of eight microsatellite loci were investigated in the gynogenetic diploid offspring; the proportion of heterozygous progeny was used to estimate microsatellite–centromere (M–C) distances. Mendelian inheritance was confirmed for the eight loci by examining the genotypic segregation in the control crosses. Three of the eight microsatellite loci showed the existence of null alleles in four control crosses. All gynogenetic offspring only possessed the alleles of the mother, indicating 100% success level for the five families. The M–C recombination frequency estimates ranged from 0.62 to 0.77 (0.72 mean), comparable to those in the oyster based on allozyme markers and suggesting that meiotic gynogenesis does not appear to be a very efficient inbreeding method in the oyster. Recombination frequencies observed were often higher than the theoretical maximum of 0.67, indicating the existence of positive interference after a single chiasma formation in some chromosomes. Information on the positions of centromeres in relation to the microsatellite loci will represent a contribution toward assembly of genetic maps in C. gigas.
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- 2006
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16. Segregation of Microsatellite Alleles in Gynogenetic Diploid Pacific Abalone (Haliotis discus hannai)
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Akihiro Kijima and Qi Li
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Recombination, Genetic ,Genetics ,Genetic Carrier Screening ,Gastropoda ,Inheritance Patterns ,Biology ,biology.organism_classification ,Applied Microbiology and Biotechnology ,Null allele ,Fixation index ,Sex Factors ,Gene mapping ,Haliotis discus ,Animals ,Microsatellite ,Female ,Inbreeding ,Allele ,Ploidy ,DNA Primers ,Microsatellite Repeats - Abstract
Inheritance of 9 microsatellite loci was examined in 3 families of gynogenetic Pacific abalone Haliotis discus hannai produced by fertilizing eggs with UV-irradiated sperm followed by inhibition of the second meiotic division. The proportion of heterozygous progeny was used to estimate marker-centromere (M-C) distances. All loci conformed to Mendelian segregation in the control crosses when null alleles were accounted for. The absence of paternal alleles confirmed the gynogenetic origin of the offspring and indicated 100% success for 3 families. Estimated recombinant frequencies ranged from 0.10 to 0.60, which is lower than those observed in other gynogenetic diploid animals. The mean recombination frequency was 0.22, corresponding to a fixation index of 0.78 in one generation. This is 3.12 times the increase in homozygosity expected after one generation of sib mating (0.25), suggesting meiotic gynogenesis may be an effective means of rapid inbreeding in the abalone. M-C map distances for the 9 loci varied between 5 and 30 cM under the assumption of complete interference. The information about M-C distances will be useful for future gene mapping in H. discus hannai.
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- 2005
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17. Loss of genetic variation at microsatellite loci in hatchery strains of the Pacific abalone (Haliotis discus hannai)
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Qi Li, Choul-Ji Park, Akihiro Kijima, and Takashi Endo
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Genetics ,Genetic diversity ,Abalone ,Strain (biology) ,Genetic variation ,Haliotis discus ,Microsatellite ,Genetic variability ,Aquatic Science ,Biology ,biology.organism_classification ,human activities ,Hatchery - Abstract
In order to assess the utility of microsatellite DNA markers for detecting changes of genetic diversity in hatchery strains and for estimating their genetic relationships, we used six microsatellite markers to estimate the level of genetic diversity within three hatchery strains and two wild populations of Pacific abalone, and compared the degree of genetic differentiation between them. High polymorphism at the microsatellite loci was found within both hatchery and wild abalone populations. Compared to wild populations, all the hatchery strains showed less genetic variation as revealed in lower number of alleles and lower expected heterozygosity, indicating that bottleneck effects occurred when each strain was founded. Significant differentiation was found between the hatchery strains, and between the hatchery strains and wild populations (Fst range: 0.059–0.427; Rst range: 0.056–0.351), and no obvious difference was detected between the wild populations (Fst=0.004; Rst=0.007). According to the neighbor-joining tree topology constructed on the basis of genetic distances among individuals, almost all individuals from each hatchery strain were closely clustered, demonstrating the feasibility of microsatellite analysis for discrimination between hatchery strains. The results obtained in this study indicate that it is necessary to genetically characterize the abalone strains that are being released every year in order to monitor the effect on the genetic diversity of wild populations.
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- 2004
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18. Molecular cloning and expression analysis of vitellogenin in scallop,Patinopecten yessoensis(bivalvia, mollusca)
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Masahiko Harata, Makoto Osada, Mitsuyo Kishida, and Akihiro Kijima
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biology ,cDNA library ,Patinopecten yessoensis ,Dot blot ,Cell Biology ,biology.organism_classification ,Molecular biology ,Vitellogenin ,Complementary DNA ,Genetics ,Protein biosynthesis ,biology.protein ,Northern blot ,Vitellogenesis ,Developmental Biology - Abstract
The present study was undertaken to determine scallop vitellogenin (Vtg) cDNA sequence, to identify Vtg synthesizing cell, and to analyze the regulation of Vtg mRNA expression. Clones containing partial cDNA sequence of Vtg were isolated from cDNA library of the scallop ovary by immunoscreening with the anti-scallop vitellin (Vn) serum. The deduced amino acid sequence of the clone containing the longest cDNA insert (1,689 bp) was identified as a member of the lipid transport protein family and exhibited about 20-35% identity with Vtgs of other oviparous animals. Northern blot analysis identified a single transcript longer than 10 kb in the ovary. Dot blot analysis of the ovary showed a high amount of Vtg mRNA during the growing stage and the level was retained until spawning stage. In situ hybridization demonstrated the expression of Vtg mRNA in the auxiliary cells closely associated with growing oocytes, suggesting that the synthesis of a major yolk protein in the scallop occurs through hetero-synthetic pathway without mediation through the blood flow but occurs de novo in the ovary. The content of Vtg mRNA in the ovarian tissue cultured in vitro with vitellogenesis promoting factor (VPF), which strongly promotes Vtg protein synthesis, from the cerebral plus pedal ganglion (CPG) showed no change. The transcription of Vtg mRNA appeared to be promoted by estradiol-17beta (E2) not by VPF although VPF may enhance the translation of Vtg mRNA.
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- 2004
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19. Different expression in MDH isozymes among local populations in freshwater shrimp, Paratya compressa (Decapoda: Atyidae)
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Yoshihisa Fujio, Minoru Ikeda, and Akihiro Kijima
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Fishery ,biology ,Decapoda ,Freshwater shrimp ,Genetics ,Zoology ,Paratya compressa ,General Medicine ,biology.organism_classification ,Isozyme ,Molecular Biology ,Atyidae - Published
- 2004
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20. Allelic transmission of microsatellites and application to kinship analysis in newly hatched Pacific abalone larvae
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Choul-Ji Park, Qi Li, and Akihiro Kijima
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Genetics ,education.field_of_study ,Population ,Aquatic Science ,Biology ,biology.organism_classification ,Null allele ,symbols.namesake ,Genetic distance ,Inheritance Mode ,Haliotis discus ,Mendelian inheritance ,symbols ,Microsatellite ,Allele ,education - Abstract
The inheritance mode of six previously published and newly developed microsatellite markers was investigated in newly hatched Haliotis discus hannai larvae from four controlled crosses, and the feasibility of these markers for kinship estimation was also examined. Microsatellite DNA was successfully amplified from H. discus hannai larvae using the Chelex extraction method, and at least 15 microsatellite loci could be analyzed in a single trochophore larva. All six microsatellite loci were compatible with Mendelian inheritance. Neither evidence of sex-linked barriers to transmission nor evidence of major barriers to fertilization between gametes from the parents was shown. One of the six microsatellite loci showed the existence of null alleles in one family, indicating that the loci should be used in population studies with caution. Although the null allele heterozygotes were considered as homozygotes in the calculation of genetic distance, offspring from four full-sib families were unambiguously discriminated in the neighbor-joining dendrogram. The result demonstrates that the microsatellite markers might be capable of discriminating between related and unrelated abalone larvae in the situation where no pedigree information is available.
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- 2003
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21. Genetic differentiation among three color variants of Japanese sea cucumber Stichopus japonicus
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Manami Kanno and Akihiro Kijima
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Sea cucumber ,Genetic marker ,Sympatric speciation ,Dendrogram ,Botany ,Zoology ,Aquatic Science ,Biology ,Stichopus ,biology.organism_classification ,Allele frequency ,Genetic differentiation - Abstract
In order to evaluate genetic differentiation among three color variants (red, green and black) of Japanese sea cucumber, Stichopus japonicus, 11 isozyme loci were used as genetic markers for 448 individuals collected from four localities around Japan. Significant differences of allele frequencies were observed between all pairs of color types sympatrically. Average genetic distances at seven loci between the three sympatric color types were 0.0173 between the red and the other color types, and 0.0015 between the green and the black types. A dendrogram drawn from genetic distances among the three color types across all four localities showed two distinct clusters comprising all the red types and all the green and the black types, respectively. These results indicated that the red type showed definite genetic differentiation from the other color types.
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- 2003
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22. Development of 12 polymorphic microsatellite DNA markers for the kelp Ecklonia cava (Phaeophyceae, Laminariales)
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Shingo Sakamoto, Yoshihisa Suyama, Masakazu N. Aoki, Manami Kanno, Akihiro Kijima, Kazuo Inaba, Azusa Kamiyama, and Tomoko Itou
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education.field_of_study ,Ecklonia cava ,biology ,Population ,Kelp ,Zoology ,Locus (genetics) ,biology.organism_classification ,Natural population growth ,Botany ,Genetics ,Polymorphic Microsatellite Marker ,Microsatellite ,education ,Genotyping ,Ecology, Evolution, Behavior and Systematics - Abstract
Twelve polymorphic microsatellite markers were isolated from the kelp Ecklonia cava Kjellman (Phaeophyceae, Laminariales). The applicability of these markers was confirmed by genotyping of 24 individuals from a natural population in Japan. All 12 loci were polymorphic, with the number of alleles ranging from 2 to 11 per locus. The range of expected heterozygosities in the population was 0.187–0.867. These informative microsatellite markers will be useful in genetic studies of this species.
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- 2011
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23. Effects of ultraviolet irradiation on genetical inactivation and morphological structure of sperm of the Japanese scallop, Patinopecten yessoensis
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Akihiro Kijima, Qi Li, Ken Hirohashi, Makoto Osada, and Masaru Kashihara
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endocrine system ,urogenital system ,Patinopecten yessoensis ,Semen ,Anatomy ,Aquatic Science ,Biology ,Flagellum ,biology.organism_classification ,Sperm ,Andrology ,Human fertilization ,Scallop ,Irradiation ,Acrosome ,reproductive and urinary physiology - Abstract
Effects of ultraviolet (UV) irradiation on genetic inactivation and morphological structure of sperms were examined in the scallop, Patinopecten yessoensis . Haploid gynogenesis of the scallop was successfully induced by 50–60 s UV irradiation of 720 μW cm −2 s −1 . The fertilization rate apparently decreased with increasing irradiation time, and the development of the eggs fertilized with the genetically inactivated sperms terminated before reaching the D-shaped larvae stage. Scanning electron microscopy (SEM) showed clear destruction of the sperm acrosome and flagellum in the UV-irradiated sperms. As the duration of UV irradiation increased, the acrosome of sperms tended to suffer greater damage, until the sperms eventually lost their flagella. Abnormalities in these structures have appeared to account, at least in part, for the decline of the fertilization rate of eggs inseminated with UV-irradiated sperms.
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- 2000
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24. Effects of ultraviolet irradiation on genetical inactivation and morphological features of sperm of the Pacific oyster Crassostrea gigas
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Akihiro Kijima, Ken Hirohashi, Masaru Kashihara, Makoto Osada, and Qi Li
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endocrine system ,biology ,urogenital system ,Anatomy ,Aquatic Science ,Pacific oyster ,Flagellum ,biology.organism_classification ,Sperm ,Andrology ,Human fertilization ,Ultraviolet light ,Irradiation ,Ploidy ,Acrosome ,reproductive and urinary physiology - Abstract
SUMMARY: Effects of ultraviolet (UV) irradiation on genetical inactivation and morphological features of sperm were examined in the Pacific oyster. Ultraviolet light (254 nm) was effective for inactivating sperm chromosomes. Irradiation for 60 s at a UV intensity of 72 erg/mm 2 per s was the optimum dose to achieve haploid gynogenesis. The rates of the fertilization and the development of D-shaped larvae decreased with increasing irradiation time, and the development of the eggs fertilized with the genetically inactivated sperms terminated before reaching the D-shaped stage. Electron microscopy showed clear destruction of the sperm acrosome and flagellum in the UV-irradiated sperms. As the duration of irradiation increased, the acrosome of sperms tended to suffer greater damage until the sperms eventually lost their flagella. Abnormalities in these structures have appeared to account, at least in part, for the decline of the fertilization rate of eggs inseminated with UV-irradiated sperms.
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- 2000
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25. Detection of Heat Stability Variants in GPI Isozymes of Goldfish and Crucian Carp
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Takeharu Takase, Yoshihisa Fujio, and Akihiro Kijima
- Subjects
biology ,Glucosephosphate Isomerase ,Biochemistry ,Crucian carp ,Heat stability ,Anatomy ,Aquatic Science ,biology.organism_classification ,Isozyme - Published
- 1998
- Full Text
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26. Biochemical and Morphological Evidence of Two Sympatric Forms, Interpreted as Sibling Species, in the Estuarine Grapsid Crab Hemigrapsus penicillatus (De Haan)
- Author
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Minoru Ikeda, Akihiro Kijima, and Masatsugu Takano
- Subjects
Economics and Econometrics ,geography ,geography.geographical_feature_category ,biology ,Sympatric speciation ,Ecology ,Sibling species ,Hemigrapsus penicillatus ,Materials Chemistry ,Media Technology ,Forestry ,Estuary ,biology.organism_classification - Published
- 1997
- Full Text
- View/download PDF
27. Permanent Genetic Resources added to Molecular Ecology Resources Database 1 June 2010 - 31 July 2010
- Author
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Cynthia Riginos, Rasanthi M. Gunasekera, James P. Hereward, Adam E. Vorsino, C. C. Vinson, Philippe Jarne, H. A. Rose, Joël Bried, Kittipath Prapayotin-Riveros, A. M. Risterucci, Angélique Quilichini, Mark G. Wright, Asta Audzijonyte, Hélène Delatte, Rebecca N. Johnson, Ryan A. Thum, Charles R. Vossbrinck, Yan Hong, Chunhong Li, Byeong-Wha Min, Akihiro Kijima, Pierre-Jean G. Malé, P. Charruau, Andrew J. Lowe, Karen-Ann Gray, Gregory J. Bugbee, A. Y. Ciampi, Woo-Jin Kim, Gudbjorg I. Aradottir, Steven J. Hanley, Minghui Liao, Jean-François Martin, Benjamin Fartek, Jae K. Noh, Manami Kanno, Bernard Reynaud, Hyun Chul Kim, K. Silbermayr, Paul J. DeBarro, Thibaut Malausa, D. Petro, Michelle D. Marko, Michael G. Gardner, Ania M. Wieczorek, Qi Jianfei, Chris Walzer, N. Tero, Samuel Nibouche, Kwan S. Kim, Emilie C. Bess, Ann E. Noack, Jeong-Ho Lee, Shotaro Hirase, G. Bourdel, Malvina Andris, Iracilda Sampaio, Mark D. B. Eldridge, Choul-Ji Park, Pamela A. Burger, Jang W. Lee, Nathan Havil, Jason C. White, D. Enkhbileg, Russell H. Messing, Jérôme Orivel, Laurent Costet, Jeong-In Myeong, Karen Miller, G. Arnau, Phillip R. England, Nathan Lo, Francesco Bonadonna, Elizabeth A. LaRue, Marivana Borges Silva, Marie-Pierre Dubois, Centre d’Ecologie Fonctionnelle et Evolutive (CEFE), Institut de Recherche pour le Développement (IRD [France-Sud])-Centre National de la Recherche Scientifique (CNRS)-École pratique des hautes études (EPHE)-Université de Montpellier (UM)-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro)-Institut National de la Recherche Agronomique (INRA)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-Université Paul-Valéry - Montpellier 3 (UM3), Department of Biomedical Sciences, Institute of Population Genetics, University of Veterinary Medicine, University of Veterinary Medicine, Research Institute of Wildlife Ecology, University of Veterinary Medicine, Department of Epidemiology, Biostatistics and Occupational Health [Montréal], McGill University, Institut de Chimie de Clermont-Ferrand (ICCF), Université Blaise Pascal - Clermont-Ferrand 2 (UBP)-Sigma CLERMONT (Sigma CLERMONT)-Centre National de la Recherche Scientifique (CNRS), Laboratoire Evolution, Génomes et Spéciation (LEGS), Centre National de la Recherche Scientifique (CNRS), School of Physics and Astronomy, University of Birmingham [Birmingham], Division of Cardiovascular Medicine, University of Cambridge [UK] (CAM), Birkbeck College [University of London], Department of Mathematical Sciences, TJ Watson, IBM, Southeast University [Jiangsu], State Key Lab. of Information Engineering in Surveying, Mapping and Remote Sensing, Wuhan University [China], Institut Sophia Agrobiotech [Sophia Antipolis] (ISA), Institut National de la Recherche Agronomique (INRA)-Université Nice Sophia Antipolis (... - 2019) (UNS), Université Côte d'Azur (UCA)-Université Côte d'Azur (UCA)-Centre National de la Recherche Scientifique (CNRS), Evolution et Diversité Biologique (EDB), Institut de Recherche pour le Développement (IRD)-Université Toulouse III - Paul Sabatier (UT3), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS), Ecologie des forêts de Guyane (ECOFOG), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut National de la Recherche Agronomique (INRA)-Université des Antilles et de la Guyane (UAG)-AgroParisTech-Centre National de la Recherche Scientifique (CNRS), School of Mechanical and Chemical Engineering, The University of Western Australia (UWA), Institut de recherche agricole pour le développement (IRAD), Ministère de la Recherche et de l'innovation, Department of Physics and Graduate School of Nanoscience and Technology, Korea Advanced Institute of Science and Technology (KAIST), Paris-Jourdan Sciences Economiques (PSE), Centre National de la Recherche Scientifique (CNRS)-École des Ponts ParisTech (ENPC)-École des hautes études en sciences sociales (EHESS)-Institut National de la Recherche Agronomique (INRA)-École normale supérieure - Paris (ENS Paris), Polymorphismes d'intérêt agronomique (UMR PIA), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut National de la Recherche Agronomique (INRA), Technologie Servier, Institute of Arctic and Alpine Research (INSTAAR), University of Colorado [Boulder], Centre de recherche sur l'espace sonore et l'environnement urbain [1998-2014] (CRESSON [1998-2014]), Ambiances architecturales et urbaines (AAU), Centre National de la Recherche Scientifique (CNRS)-École Centrale de Nantes (ECN)-Ministère de la Culture et de la Communication (MCC)-Centre National de la Recherche Scientifique (CNRS)-École Centrale de Nantes (ECN)-Ministère de la Culture et de la Communication (MCC), Université Paul-Valéry - Montpellier 3 (UPVM)-Institut National de la Recherche Agronomique (INRA)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-École Pratique des Hautes Études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [France-Sud])-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), McGill University = Université McGill [Montréal, Canada], Université Blaise Pascal - Clermont-Ferrand 2 (UBP)-SIGMA Clermont (SIGMA Clermont)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Institut Sophia Agrobiotech (ISA), Institut National de la Recherche Agronomique (INRA)-Université Nice Sophia Antipolis (1965 - 2019) (UNS), COMUE Université Côte d'Azur (2015-2019) (COMUE UCA)-COMUE Université Côte d'Azur (2015-2019) (COMUE UCA)-Centre National de la Recherche Scientifique (CNRS), Université de Toulouse (UT)-Université de Toulouse (UT)-Centre National de la Recherche Scientifique (CNRS), École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Institut National de la Recherche Agronomique (INRA)-École des hautes études en sciences sociales (EHESS)-École des Ponts ParisTech (ENPC)-Centre National de la Recherche Scientifique (CNRS), Institute of Arctic Alpine Research [University of Colorado Boulder] (INSTAAR), Centre de recherche sur l'espace sonore et l'environnement urbain (CRESSON), École Centrale de Nantes (ECN)-Ministère de la Culture et de la Communication (MCC)-Centre National de la Recherche Scientifique (CNRS)-École Centrale de Nantes (ECN)-Ministère de la Culture et de la Communication (MCC)-Centre National de la Recherche Scientifique (CNRS), Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)-École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-Institut National de la Recherche Agronomique (INRA)-Université Paul-Valéry - Montpellier 3 (UPVM)-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut de Recherche pour le Développement (IRD [France-Sud]), Centre National de la Recherche Scientifique (CNRS)-Université Nice Sophia Antipolis (... - 2019) (UNS), COMUE Université Côte d'Azur (2015-2019) (COMUE UCA)-COMUE Université Côte d'Azur (2015-2019) (COMUE UCA)-Institut National de la Recherche Agronomique (INRA), Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Université Toulouse III - Paul Sabatier (UT3), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées, École normale supérieure - Paris (ENS Paris), and Centre National de la Recherche Scientifique (CNRS)-Ministère de la Culture et de la Communication (MCC)-École Centrale de Nantes (ECN)-Centre National de la Recherche Scientifique (CNRS)-Ministère de la Culture et de la Communication (MCC)-École Centrale de Nantes (ECN)
- Subjects
0106 biological sciences ,Identification ,[SDV]Life Sciences [q-bio] ,Banque de gènes ,computer.software_genre ,01 natural sciences ,F30 - Génétique et amélioration des plantes ,GENBANK ,Marqueur génétique ,biology ,Database ,CATALOGUE ,Dioscorea rotundata ,Dioscorea trifida ,Dioscorea ,GENETIQUE DES POPULATIONS ,Banque de données ,ECOLOGIE ,Biotechnology ,Écologie ,PHYLOGENY ,Zoology ,MOLECULAR MARKERS ,Licania ,ECOLOGY ,010603 evolutionary biology ,Dioscorea transversa ,Ressource génétique végétale ,REFERENCEMENT ,POPULATION GENETICS ,Genetics ,Ressource génétique animale ,Dioscorea pentaphylla ,Ecology, Evolution, Behavior and Systematics ,Ressource génétique ,Biologie moléculaire ,TAXONOMY ,biology.organism_classification ,L10 - Génétique et amélioration des animaux ,Tuberolachnus salignus ,Hirtella ,computer ,010606 plant biology & botany - Abstract
Correspondance: Molecular Ecology Resources Primer Development Consortium, E-mail: editorial.office@molecol.com; International audience; This article documents the addition of 512 microsatellite marker loci and nine pairs of Single Nucleotide Polymorphism (SNP) sequencing primers to the Molecular Ecology Resources Database. Loci were developed for the following species: Alcippe morrisonia morrisonia, Bashania fangiana, Bashania fargesii, Chaetodon vagabundus, Colletes floralis, Coluber constrictor flaviventris, Coptotermes gestroi, Crotophaga major, Cyprinella lutrensis, Danaus plexippus, Fagus grandifolia, Falco tinnunculus, Fletcherimyia fletcheri, Hydrilla verticillata, Laterallus jamaicensis coturniculus, Leavenworthia alabamica, Marmosops incanus, Miichthys miiuy, Nasua nasua, Noturus exilis, Odontesthes bonariensis, Quadrula fragosa, Pinctada maxima, Pseudaletia separata, Pseudoperonospora cubensis, Podocarpus elatus, Portunus trituberculatus, Rhagoletis cerasi, Rhinella schneideri, Sarracenia alata, Skeletonema marinoi, Sminthurus viridis, Syngnathus abaster, Uroteuthis (Photololigo) chinensis, Verticillium dahliae, Wasmannia auropunctata, and Zygochlamys patagonica. These loci were cross-tested on the following species: Chaetodon baronessa, Falco columbarius, Falco eleonorae, Falco naumanni, Falco peregrinus, Falco subbuteo, Didelphis aurita, Gracilinanus microtarsus, Marmosops paulensis, Monodelphis Americana, Odontesthes hatcheri, Podocarpus grayi, Podocarpus lawrencei, Podocarpus smithii, Portunus pelagicus, Syngnathus acus, Syngnathus typhle,Uroteuthis (Photololigo) edulis, Uroteuthis (Photololigo) duvauceli and Verticillium albo-atrum. This article also documents the addition of nine sequencing primer pairs and sixteen allele specific primers or probes for Oncorhynchus mykiss and Oncorhynchus tshawytscha; these primers and assays were cross-tested in both species.
- Published
- 2011
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28. Genetic differentiation among local populations of common freshwater shrimp Paratya compressa improvisa
- Author
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Yoshihisa Fujio, Minoru Ikeda, and Akihiro Kijima
- Subjects
biology ,Decapoda ,Ecology ,Freshwater shrimp ,Population genetics ,General Medicine ,Subspecies ,biology.organism_classification ,Crustacean ,Shrimp ,Genetic distance ,Genetics ,Genetic variability ,Molecular Biology - Abstract
Nei's (1972) genetic distance were estimated among 21 populations of the common freshwater shrimp Paratya compressa improvisa, living in the northern part of Japan. The estimates were based on examination of 18 enzyme loci by starch-gel electrophoresis. These shrimp populations were genetically classified into three geographic groups on the basis of predominating alleles typical for two loci Fdp-1 and Fdp-2. The "Kanto group" consisted of individuals having Fdp-1a and Fdp-2c, the "Japan Sea group" having Fdp-1b and Fdp-2a, and the "Pacific Ocean group" having Fdp-1b and Fdp-2c. Nei's genetic distance among the three different geographic groups, varied from 0.0572 to 0.2136. Average genetic distances were 0.1001 between Pacific Ocean and Japan Sea groups, 0.0851 between Pacific Ocean and Kanto groups, and 0.1990 between Japan Sea and Kanto groups. These values of genetic distance among the three groups are comparable with those among different subspecies.
- Published
- 1993
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29. Haplotypic Differences and Variability of Mitochondrial DNA among Cultured Stocks of the Masu Salmon Complex
- Author
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Akihiro Kijima and Daisuke Matsunami
- Subjects
Genetics ,Restriction enzyme ,Mitochondrial DNA ,Haplotype ,biology.protein ,Oncorhynchus ,Genetic variability ,Aquatic Science ,Biology ,HindIII ,Restriction fragment length polymorphism ,biology.organism_classification ,Nucleotide diversity - Abstract
In order to estimate genetic differences and variability among and within cultured stocks of the masu salmon complex, restricition-fragment length polymorphisms (RFLPs) of mitochondrial DNA (mtDNA) were performed for three masu salmon (Oncorhynchus masou masou) stocks and one amago salmon (O. m. macrostomus) stock. Based on our RFLP analysis using six 6-base recognized restriction endonucleases (BamHI, BglII, EcoRV, Hincll, HindIII, and XbaI), we concluded that: 1) the total size of mtDNA was about 17.3±0.5Kbp, 2) thirteen mtDNA haplo-types were observed among 59 individuals of the 4 stocks, 3) major haplotypes were different from each other and stock-specific haplotypes were observed in three out of four stocks, 4) the nucleotide diversity within the non-selected stocks ranged from 0.00170 to 0.00253, while no variation was observed in selected Amago-parr stock. The results suggest that the Amago-parr stock consists of only one maternal line while the other stocks consist of several maternal lines.
- Published
- 1992
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30. Genetic Divergence Between Two Subspecies in Parutya compressa(Decapoda:Atyidae)
- Author
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Akihiro Kijima, Minoru Ikeda, and Yoshihisa Fujio
- Subjects
Genetics ,Genetic divergence ,Genetic distance ,Evolutionary biology ,Freshwater shrimp ,Locus (genetics) ,Genetic variability ,Aquatic Science ,Biology ,Subspecies ,biology.organism_classification ,Atyidae ,Paratya - Abstract
In order to estimate the degree of genetic divergence between two Paratya subspecies, Paratya compressa compressa and P. c. improvisa, which are common freshwater shrimp in Japan, isozymic analysis was carried out by starch gel electorophoresis. Eighteen loci coding for 15 enzymes were scored in both subspecies. Of the 18 loci, 7 divergent loci with no common allele were observed between the two subspecies. Nei's genetic distance between the subspecies was 0.597. Average heterozygosity was 0.044 in P. c. compressa but 0.069 in P. c. improvisa, indicating a difference in genetic variability between the two subspecies. These results indicate that the two subspecies are genetically divergent. The number of divergent loci and genetic similarities pointed to useful in-dices for genetic divergence between closely related species in the process of speciation.
- Published
- 1992
- Full Text
- View/download PDF
31. Complete mitochondrial DNA sequence and phylogenetic analysis of Zhikong scallop Chlamys farreri (Bivalvia: Pectinidae)
- Author
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Kefeng Xu, Manami Kanno, Hong Yu, Akihiro Kijima, and Qi Li
- Subjects
Genetics ,Genetic Markers ,Mitochondrial DNA ,biology ,Base Sequence ,Argopecten irradians ,Pectinidae ,Molecular Sequence Data ,General Medicine ,Sequence Analysis, DNA ,biology.organism_classification ,DNA, Mitochondrial ,Pteriomorphia ,Pecten (genus) ,Scallop ,Transfer RNA ,Animals ,Amino Acid Sequence ,Codon ,Molecular Biology ,Gene ,Phylogeny - Abstract
The complete mitochondrial genome of Zhikong scallop Chlamys farreri is 21,695 bp in length and contains 12 protein-coding genes (the atp8 gene is absent, as in most bivalves), 2 ribosomal RNA genes, and 22 transfer RNA genes. The heavy strand has an overall A+T content of 58.7%. GC and AT skews for the mt genome of C. farreri are 0.337 and -0.184, respectively, indicating the nucleotide bias against C and A. The mitochondrial gene order of C. farreri differs drastically from the scallops Argopecten irradians, Mimachlamys nobilis and Placopecten magellanicus, which belong to the same family Pectinidae. 6623 bp non-coding nucleotides exist intergenically in the mitogenome of C. farreri, with a large continuous sequence (4763 bp) between tRNA ( Val ) and tRNA ( Asn ). Two repeat families are found in the large continuous sequence, which seems to be a common feature of scallops. Phylogenetic analysis based on 12 concatenated amino acid sequences of protein-coding genes supports the monophyly of Pectinidae and paraphyletic Pteriomorphia with respect to Heteroconchia.
- Published
- 2009
32. Microsatellite analysis of Japanese sea cucumber, Stichopus (Apostichopus) japonicus, supports reproductive isolation in color variants
- Author
-
Qi Li, Manami Kanno, Yoshihisa Suyama, and Akihiro Kijima
- Subjects
education.field_of_study ,Pigmentation ,Reproduction ,Population ,UPGMA ,Zoology ,Color ,Genetic Variation ,Genetic relationship ,Reproductive isolation ,Biology ,biology.organism_classification ,Applied Microbiology and Biotechnology ,Sympatric speciation ,Stichopus ,Botany ,Apostichopus japonicus ,Microsatellite ,Animals ,education ,Alleles ,Phylogeny ,Demography ,Microsatellite Repeats - Abstract
The genetic relationship among the three color variants (Red, Green, and Black) of the Japanese sea cucumber, S. japonicus, was investigated using 11 microsatellite markers. Genetic differentiation testing among the three sympatric color types showed the strong heterogeneity of Red (p < 0.001), while no significant difference was observed between Green and Black (p = 0.301 to 0.961). UPGMA trees constructed from 10 sample lots from 5 localities showed two distinct clusters, one from the Red types and the other from the Green and Black types. In addition, the sympatric Green and Black formed one subcluster with strong bootstrap support at each locality. These results indicate the separate species status of Red and the other color types, and also support the population identity of sympatric Green and Black.
- Published
- 2006
33. Induction of Haploid Androgenesis in Pacific Oyster by UV Irradiation
- Author
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Akihiro Kijima, Tomoko Hisatsune, and Qi Li
- Subjects
Genetics ,Indoles ,Time Factors ,Germinal vesicle ,Female pronucleus ,Ultraviolet Rays ,Haploidy ,Biology ,Pacific oyster ,biology.organism_classification ,Ostreidae ,Applied Microbiology and Biotechnology ,Andrology ,Meiosis ,Polar body ,Human fertilization ,Japan ,Microscopy, Fluorescence ,Chromosome Segregation ,Animals ,Ploidy ,Mitosis ,Ovum - Abstract
Androgenesis, development from paternal but not maternal chromosomes, can be induced in some organisms including fish, but has not been induced previously in mollusk. In this study we investigated the induction of haploid androgenesis in the Pacific oyster by ultraviolet irradiation and observed nuclear behavior in the androgenetic eggs. Irradiation for 90 seconds at a UV intensity of 72 erg/mm2 per second (6480 erg/mm2) was the optimal dose to achieve haploid androgenesis. The fertilization and development rates of D-shaped larvae decreased with increasing exposure time, and the development of the genetically inactivated eggs terminated before reaching the D-shaped stage. Cytologic observations showed that UV irradiation did not affect germinal vesicle breakdown or chromosomal condensation but caused various nuclear behavioral patterns during meiosis and first mitosis: 21.7% of eggs extruded all maternal chromosomes as 2 or 3 polar bodies, and 59.1% of eggs formed one female pronucleus. The maternally derived nucleus did not participate, or partially participated, in the first karyokinesis. The cytologic evidence demonstrates that the male genome is directing development in haploids produced by UV irradiation.
- Published
- 2004
- Full Text
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34. Isolation and characterization of twenty microsatellite loci in Japanese sea cucumber (Stichopus japonicus)
- Author
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Qi Li, Akihiro Kijima, and Manami Kanno
- Subjects
Genetics ,education.field_of_study ,Polymorphism, Genetic ,biology ,Base Sequence ,Sea Cucumbers ,High variability ,Population ,Molecular Sequence Data ,Locus (genetics) ,Sequence Analysis, DNA ,biology.organism_classification ,Applied Microbiology and Biotechnology ,Sea cucumber ,Gene Frequency ,Microsatellite ,Animals ,Genetic variability ,Allele ,Stichopus ,Cloning, Molecular ,education ,DNA Primers ,Gene Library ,Microsatellite Repeats - Abstract
Twenty microsatellite markers were first developed from the Japanese sea cucumber Stichopus japonicus using an enrichment protocol. Of the 20 microsatellite loci, 19 loci were polymorphic in the population examined. At these polymorphic loci, the number of alleles per locus varied from 2 to 15, and the observed heterozygosities ranged from 0.03 to 0.97, which is considerably higher than those previously found for allozymes. The high variability of the microsatellite markers identified in this study will make them excellent tools for genetic analyses of S. japonicus.
- Published
- 2004
35. Sexual Dimorphism of the Last Thoracic Sternal Plate in Paratya compressa (Decapoda: Atyidae)
- Author
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Akihiro Kijima, Minoru Ikeda, and Yoshihisa Fujio
- Subjects
Sexual dimorphism ,Fishery ,Economics and Econometrics ,biology ,Decapoda ,Materials Chemistry ,Media Technology ,Paratya compressa ,Zoology ,Forestry ,biology.organism_classification ,Atyidae - Published
- 1994
- Full Text
- View/download PDF
36. Allozyme and morphometric variability in the dogwhelk, Nucella heyseana (Gastropoda:Muricidae) from Russian and Japanese waters: evidence for a single species under different names
- Author
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Akihiro Kijima, Nadezda I. Zaslavskaya, Olga V. Svinyna, and Yuri Ph. Kartavtsev
- Subjects
Morphometrics ,education.field_of_study ,Species complex ,Muricidae ,Dendrogram ,Population ,Zoology ,Biology ,biology.organism_classification ,Cladistics ,Taxon ,education ,Bay ,Ecology, Evolution, Behavior and Systematics - Abstract
A complicated issue of very variable shell morphology in dogwhelks has led to a detailed discussion and set of complex analyses based on the methods of biochemical genetics, molecular genetics, and morphometrics. In this investigation, 29 allozyme loci and five morphometric shell characters were analysed for six samples of Nucella heyseana (Dunker, 1882) from Sakhalin Island, Primorye (Russia) and Onagawa Bay (Japan). An unweighted pair group method with arithmetic mean dendrogram was constructed using genetic distances for the six populations of N. heyseana sampled, and when combined with an earlier study of N. freycinetti Deshayes, 1841, indicated that two separate species are present. However, the population genetic analysis in combination with multivariate analysis of variance, discriminant and factor analyses for morphometric traits lead us to conclude that all six samples taken from Russian and Japanese waters belong to a single species. The taxon, known in Japanese and Korean literature as N. freycinetti, is actually N. heyseana and N. freycinetti is the appropriate name for another species discovered earlier. For N. heyseana Nei’s minimal unbiased genetic distances were examined at three hierarchical levels: (1) within Onagawa Bay (Pacific coast of Honshu), Dm = 0.0059 ± 0.0056; (2) within the group of populations in Peter the Great Bay (Japan Sea, Russia), Dm = 0.0083 ± 0.0067 (Kartavtsev et al., 2000), and (3) within the whole area investigated in the north-western Pacific, Dm = 0.1550 ± 0.0209. Allele frequency heterogeneity and hierarchical variability showed that each bay contains a genetically distinct population of this species.
- Published
- 2006
- Full Text
- View/download PDF
37. Genetic divergence and relationship among fifteen species of generaTrachurus, Decapterus, Selar andSelaroides
- Author
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Akihiro Kijima, Nobuhiko Taniguchi, and Akira Ochiai
- Subjects
Genetic divergence ,biology ,Genetic distance ,Decapterus ,Genus ,Trachurus ,Zoology ,Taxonomy (biology) ,Genetic variability ,Subspecies ,biology.organism_classification ,Ecology, Evolution, Behavior and Systematics - Abstract
Genetic distance and the relationships among 15 species of generaTrachurus, Decapterus,Selar, andSelaroides were estimated from 18 electrophoretically detectable isozyme genes. Estimates of genetic distance (D) between every pair of species within the genusTrachurus ranged from 0.005 to 0.560 with a mean of 0.322, and from 0.484 to 1.868 with a mean of 1.022 within the genusDecapterus. Between species of different genera, estimates of D ranged from 0.786 to 2.863 with a mean of 1.784. From these results,Decapterus species could be considered as having evolved over a long period whileTrachurus is a newly arisen genus. A relationship among species suggests that theDecapterus species are expanded to offshore and deep area after being divided into some groups, and that theTrachurus species are divided presumably into at least two groups, one group of which is coastal and the other of which is offshore.Trachurus japonicus andTrachurus novaezelandiae could be considered subspecies on the basis of allelic distribution and genetic distance.
- Published
- 1988
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38. Color, growth and maturation in ploidy-manipulated fancy carp
- Author
-
K. Takegami, Akihiro Kijima, Nobuhiko Taniguchi, T. Tamura, and I. Yamasaki
- Subjects
Genetics ,Hatching ,fungi ,Second polar body ,Aquatic Science ,Biology ,Fancy carp ,biology.organism_classification ,Sperm ,Cyprinus ,Animal science ,Digestive tract ,Embryo stage ,Ploidy - Abstract
Ploidy manipulation was used to examine the effects of triploidizatin and gynogenetic diploidization in fancy carp, a race of Cyprinus carpio. Ultraviolet dosages of at least 9000 erg/mm2 were required to inactivates sperm genetically. An interval of 10–12 min before the start of 60-min cold treatments was required to retain the second polar body in fertilized eggs. At optimum conditions, survival rates of gynogenetic diploids were 80% to the eyed embryo stage and 25% to hatching; corresponding values in triploids were 73% and 32%, respectively. The highest success rates in inducing gynogenetic diploids and triploids were 100% and 68.9%, respectively. Triploids with the Japanese strain as the female and European strain as the male parent grew slower than control diploids when they were reared in the same pond for 20 months. However, triploids using the Japanese strain as both parents grew larger in 7 months than control diploids. Triploids at 20 months of age had less developed gonads and more fat around the digestive tract than diploid fish. Male-specific color spots were smaller in triploids than in control diploids. The typical red and white fancy carp colors were found in the gynogenetic diploids in almost the same frequency as in the control diploids. Recombination between gene and centromere was observed at the Gpi-2 locus in gynogenetic diploids.
- Published
- 1986
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39. Correlation Between Geographic Distance and Genetic Distance in Populations of Chum Salmon Oncorhynchus keta
- Author
-
Akihiro Kijima and Yoshihisa Fujio
- Subjects
Correlation ,education.field_of_study ,Isolated population ,Genetic distance ,biology ,Ecology ,Geographical distance ,Population ,Oncorhynchus ,Aquatic Science ,Allele ,education ,biology.organism_classification - Abstract
The gene consitution of an individual river population of the chum salmon was compared with that of other river populations by geneitc distance calculated from the allelic frequencies at six isozymic loci, Idh-A2, Idh-B2, Ldh-A1, Mdh-B1, Pgm-B2 and Aat-A1, which are surveyed by starch gel electrophoresis. A matrix of genetic distances among river populations indicated that an indivdual river population could not be regarded as a completely genetic isolated population because of exchange of individuals with neighbouring river populations. Analysis of a correlation between geographic and genetic distance among river populations revealed three routes of homing migration for spawning. The correlation also revealed that gene constiutions of two river populations separated by more that about 600km along the homing migration routes could be regarded as practically independent of each other.
- Published
- 1982
- Full Text
- View/download PDF
40. Population differences in gene frequency of the Japanese scallop Patinopecten yessoensis on the Okhotsk Sea coast of Hokkaido
- Author
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Yoshihisa Fujio, Katsuyoshi Mori, and Akihiro Kijima
- Subjects
education.field_of_study ,biology ,Ecology ,Patinopecten yessoensis ,Population ,Locus (genetics) ,Aquatic Science ,biology.organism_classification ,Loss of heterozygosity ,Genetic distance ,Scallop ,Genetic variability ,education ,Allele frequency - Abstract
Genetic variability in native and sown populations, including 10 collections, of the Japanese scallop Patinopecten yessoensis on the Okhotsk Sea coast of Hokkaido in Japan was surveyed by starch gel electrophoresis for 19 genetic loci. As a whole, the proportion of polymorphicloci averaged 0.405±0.008 and the average heterozygosity 0.158±0.002, and these values were remarkably higher than those estimated for fish. Any two of the 10 collections showed clear differences in gene frequencies at more than one locus except for a few combinations, indicating that they have a breeding structure independent of each other. The mean genetic distance was larger among native populations than among sown populations. The genetic distance was 0.0035±0.0003 on the average for all populations, the value being smaller than 0.01 that is considered as the level of local race. However, the mean genetic distance between native Notoro Lake population and the other native populations was 0.0077±0.0008, the value being the largest. These results suggest that the scallop population has a structure capable of being split into a number of local subpopulations.
- Published
- 1984
- Full Text
- View/download PDF
41. Genetic divergence and morphological difference between the spotted and common mackerel
- Author
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Akihiro Kijima, Nobuhiko Taniguchi, and Akira Ochiai
- Subjects
Genetic divergence ,Scomber ,biology ,Genetic distance ,Mackerel ,Population genetics ,Zoology ,Allele ,biology.organism_classification ,Ecology, Evolution, Behavior and Systematics ,Meristics ,Dorsal fin - Abstract
Three types of mackerel,Scomber species, the typical spotted, non-spotted and their intermediate types collected from three locations in the adjacent waters of Japan were analyzed by starch gel electrophoresis and examined for some morphometric and meristic characters. Clear genetic differences between the typical spotted and non-spotted were observed at six loci, i.e.αGpd-B, Idh-A, Ldh-A, Sod, Hem-1 andHem-2, out of the 23 loci examined. The intermediate individuals genetically belong to either the spotted or non-spotted type and a genetical hybrid possessing both kinds of allele from the two typical types was not observed at all. These three types could be divided into two groups. Average genetic distances for intra- or inter groups were estimated as 0.006 and 0.414, respectively. Two morphological characters, the length of separated anal spine and the number of interneurai spines associated with the first dorsal fin spine, were found to be significant character separating the two groups. From the above results, the two groups of mackerel were clearly divided into two separate species,Scomber australasicus andS. japonicus.
- Published
- 1986
- Full Text
- View/download PDF
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