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Experimental and population genetic approaches have reshaped our view of how fungal pathogens reproduce, with consequences for our understanding of fungal invasions. Puccinia striiformis f. sp. tritici, the causal agent of stripe rust, poses a severe threat to wheat production worldwide. The sexual stage of P. striiformis f. sp. tritici was discovered >10 years ago, but how it affects the evolution of the pathogen, especially the emergence of the new virulent races, remains largely unknown. Here, using population genetic analyses, we demonstrate that sexual reproduction plays an important role in the evolution of P. striiformis f. sp. tritici races in China, specifically the newly emerged and devastating race virulent to resistance gene Yr26, which is widely used in China and exerts strong selective pressure on the pathogen population. Association analysis identified six genes encoding secreted proteins as candidates for virulence on wheat cultivars carrying the Yr26 resistance gene. Our results highlight the important role of sexual reproduction and selection exerted by hosts in the emergence of new virulent races in China.

Shrub willows (Salix spp.) are emerging as a viable lignocellulosic, second-generation bioenergy crop with many growth characteristics favorable for marginal lands in New York State and surrounding areas. Willow rust, caused by members of the genus Melampsora, is the most limiting disease of shrub willow in this region and remains extremely understudied. In this study, genetic diversity, genetic structure, and pathogen clonality were examined in Melampsora americana over two growing seasons via genotyping-by-sequencing to identify single-nucleotide polymorphism markers. In conjunction with this project, a reference genome of rust isolate R15-033-03 was generated to aid in variant discovery. Sampling between years allowed regional and site-specific investigation into population dynamics, in the context of both wild and cultivated hosts within high-density plantings. This work revealed that this pathogen is largely panmictic over the sampled areas, with few sites showing moderate genetic differentiation. These data support the hypothesis of sexual recombination between growing seasons because no genotype persisted across the two years of sampling. Additionally, clonality was determined as a driver of pathogen populations within cultivated fields and single shrubs; however, there is also evidence of high genetic diversity of rust isolates in all settings. This work provides a framework for M. americana population structure in the Great Lakes region, providing crucial information that can aid in future resistance breeding efforts.

Hemileia vastatrix is the most important fungal pathogen of coffee and the causal agent of recurrent disease epidemics that have invaded nearly every coffee growing region in the world. The development of coffee varieties resistant to H. vastatrix requires fundamental understanding of the biology of the fungus. However, the complete life cycle of H. vastatrix remains unknown, and conflicting studies and interpretations exist as to whether the fungus is undergoing sexual reproduction. Here we used population genetics of H. vastatrix to infer the reproductive mode of the fungus across most of its geographic range, including Central Africa, Southeast Asia, the Caribbean, and South and Central America. The population structure of H. vastatrix was determined via eight simple sequence repeat markers developed for this study. The analyses of the standardized index of association, Hardy–Weinberg equilibrium, and clonal richness all strongly support asexual reproduction of H. vastatrix in all sampled areas. Similarly, a minimum spanning network tree reinforces the interpretation of clonal reproduction in the sampled H. vastatrix populations. These findings may have profound implications for resistance breeding and management programs against H. vastatrix.

Phytophthora sojae, the causal agent of Phytophthora root and stem rot of soybean, has been managed with single Rps genes since the 1960s but has subsequently adapted to many of these resistance genes, rendering them ineffective. The objective of this study was to examine the pathotype and genetic diversity of P. sojae from soil samples across Illinois, Indiana, Kentucky, and Ohio by assessing which Rps genes were still effective and identifying possible population clusters. There were 218 pathotypes identified from 473 P. sojae isolates with an average of 6.7 out of 15 differential soybean lines exhibiting a susceptible response for each isolate. Genetic characterization of 103 P. sojae isolates from across Illinois, Indiana, Kentucky, and Ohio with 19 simple sequence repeat markers identified 92 multilocus genotypes. There was a moderate level of population differentiation between these four states, with pairwise FSTvalues ranging from 0.026 to 0.246. There were also moderate to high levels of differentiation between fields, with pairwise FSTvalues ranging from 0.071 to 0.537. Additionally, cluster analysis detected the presence of P. sojae population structure across neighboring states. The level of pathotype and genetic diversity, in addition to the identification of population clusters, supports the hypothesis of occasional outcrossing events that allow an increase in diversity and the potential to select for a loss in avirulence to specific resistance genes within regions. The trend of suspected gene flow among neighboring fields is expected to be an ongoing issue with current agricultural practices.

Peronospora tabacina is an obligate parasite that causes blue mold of tobacco. The pathogen reproduces primarily by sporangia, whereas the sexual oospores are rarely observed. A collection of 122 isolates of P. tabacina was genotyped using nine microsatellites to assess the population structure of individuals from subpopulations collected from central, southern, and western Europe; the Middle East; Central America; North America; and Australia. Genetic variations among the six subpopulations accounted for ∼8% of the total variation, including moderate levels of genetic differentiation, high gene flow among these subpopulations, and a positive correlation between geographic and genetic distance (r = 0.225; P < 0.001). Evidence of linkage disequilibrium (P < 0.001) showed that populations contained partially clonal subpopulations but that subpopulations from Australia and Mediterranean Europe did not. High genetic variation and population structure among samples could be explained by continuous gene flow across continents via infected transplant exchange and/or long-distance dispersal of sporangia via wind currents. This study analyzed the most numerous P. tabacina collection and allowed conclusions regarding the migration, mutation, and evolutionary history of this obligate biotrophic oomycete. The evidence pointed to the species origin in Australia and identified intracontinental and intercontinental migration patterns of this important pathogen.[Formula: see text] Copyright © 2022 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license .

The success of genetically depauperate populations in the face of environmental change is contrary to the expectation that high genetic diversity is required for rapid adaptation. Alternative pathways such as environmentally induced genetic modifications and non-genetic heritable phenotypes have been proposed mechanisms for heritable adaptation within an ecologically relevant time frame. However, experimental evidence is currently lacking to establish if, and to what extent, these sources of phenotypic variation can produce a response. To test if adaptation can rapidly occur in the absence of initial standing genetic variation and recombination in small populations, we (a) exposed replicate monoclonal populations of the microzooplankton Brachionus calyciflorus to a culturing regime that selected for phenotypic variants with elevated population growth with either high or low phosphorus food for a period of 55 days and (b) examined population level response in two fully factorial common garden experiments at day 15 and 35 of the exposure experiment. Within six generations, we observed heritable local adaptation to nutrient limitation. More specifically, populations with a history of exposure to low P food exhibited higher population growth rates under low P food conditions than populations with a high P exposure history. However, the capacity for such a response was found to vary among clones. Our study finds that although standing genetic variation is considered essential for rapid heritable adaptation, the rapid emergence of de novo genetic variation or alternative sources of phenotypic variation could aid in the establishment and persistence of low-diversity populations.

Due to climate change global temperatures are rising, which is particularly pronounced at higher latitudes. Therefore, it is important to investigate the resilience of northern ecosystems to these environmental changes. Predator-prey interactions are at the foundation of food-web dynamics in an ecosystem, making them increasingly relevant to study in the context of climate change. A predator-prey couple reflecting the dynamics of the boreal ecosystem in central Scandinavia is the gyrfalcon (Falco rusticolus) and the willow ptarmigan (Lagopus lagopus). Both show circumpolar breeding distributions which largely overlap. In this study we will describe the diet and feeding behaviour of the gyrfalcon in central Norway during the nesting stage. Previous studies have shown that gyrfalcons specialise on ptarmigan as prey throughout the year, but occasionally switch to other prey species depending on the season and area. We will also investigate how spring and summer conditions affect gyrfalcon diet, feeding behaviour and reproductive success. Climate change may alter the availability of prey for the gyrfalcons, so to investigate the ability of the gyrfalcons to switch to other prey types, we will also quantify the numerical and functional response of gyrfalcons to fluctuating ptarmigan abundances.

Streptococcus uberis is a predominant pathogen in both clinical and subclinical varieties of bovine mastitis. The genetic and evolutionary relationships among S. uberis strains from different countries are poorly understood. In this paper we used S. uberiss multilocus sequence typing (MLST) method of genotyping to decipher the prevalence of sequence types (STs) and ST complexes by country and infection level, to delineate genetic relationships among prominent STs and ST complexes. Dataset collected from PubMLST database for S. uberis were subjected to clonal cluster and phylogenetic analyses using BURST, globally optimized eBURST (goeBURST) and neighborhood joining algorithm tools, respectively. Certain countries showed clear trends of strain prevalence whereas others had a more equally weighted, diverse population. Occurrence of different severities of disease varied among countries and displayed no direct correlation with sequence type (ST). Clonal cluster and phylogenetic analyses predicted the ancestral roles of certain prominent STs and indicated possible strain migration and reticulate and convergent evolution occurring within the S. uberis population at a global scale. Genome comparison of selected strains revealed the absence of SUB0822-SUB0826 response regulator proteins from ST-5 and ST-6 indicating their preference for contagious transmission. In conclusion, the findings of this study uncovered the global evolutionary dynamics of S. uberis and showed that the study of ST and ST complexes can be a useful technique in understanding prevalence patterns and clonal propagation of S. uberis isolates. Information generated from such studies would be crucial for monitoring infection outbreaks and directing further genomic investigations. [ J Adv Biotechnol Exp Ther 2021; 4(3.000): 311-321]

Wheat stripe rust, caused by Puccinia striiformis f. sp. tritici (Pst), is one of the most destructive wheat diseases worldwide. Understanding the effects of cultivar mixture on disease control and population genetic structure of Pst could promote the effective application of cultivar mixtures. This study designed nine cultivar mixtures composed of different component cultivars with field experiments in Zitong County, Sichuan Province in two seasons from 2016 to 2018. Diseased leaves were collected in each plot of treatment in the spring and, in total, 835 and 568 isolates were obtained and genotyped with 10 pairs of simple sequence repeat markers in the 2 years, respectively. The observed and theoretical values of the area under the disease progress curve (AUDPC), wheat yield, Pst genotypic diversity, and the frequency of Pst dominant genetic groups were compared among cultivar mixtures. With the 2 years’ experiments, there were three and two cultivar mixtures, respectively, showing significant effect on the relative reduction of AUDPC; there were no significant effects on the relative yield increase in all mixtures in the 2 years. There were four and five cultivar mixtures showing positive effects on the relative increase of Pst genotypic diversity in the 2 years, respectively. Moreover, all cultivar mixtures could decrease the frequencies of Pst dominant genetic groups on highly susceptible component cultivar compared with their theoretical frequencies. [Formula: see text] Copyright © 2021 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license .

Stripe rust, caused by Puccinia striiformis f. sp. tritici, is a devastating disease of wheat (Triticum aestivum) in the United States. The fungal pathogen can rapidly evolve, producing new virulent races infecting previously resistant cultivars and genotypes adapting to different environments. The objective of this study was to investigate the long-term population dynamics of P. striiformis f. sp. tritici in the United States. Through genotyping 1,083 isolates taken from 1968 to 2009, using 14 simple sequence repeat (SSR) markers and 92 secreted protein single nucleotide polymorphism (SP-SNP) markers, 614 and 945 genotypes were detected, respectively. In general, the two types of markers produced consistent genetic relationships among the P. striiformis f. sp. tritici populations over the 40-year period. The prior-to-2000 and the 2000-to-2009 populations were significantly different, with the latter showing higher genotypic diversity and higher heterozygosity than the earlier populations. Clustering analyses using genotypes of either SSR or SP-SNP markers revealed three molecular groups (MGs), MG1, MG2, and MG3. The prior-to-2000 and the 2000-to-2009 groups both had evidence of MG1 and MG2; however, MG3 was only found in the 2000-to-2009 population. Some of the isolates in the period of 2000 to 2009 formed individual clusters, suggesting exotic incursions. Other isolates of the same period were clustered with prior-to-2000 isolates, indicating that they were developed from the previously established populations. The data suggest the coexistence of newly introduced populations alongside established populations in the United States. Twenty SP-SNP markers were significantly associated to individual avirulence genes. These results are useful for developing more accurate monitoring systems and provide guidance for disease management.

This is a registration of a meta-analysis that will broadly address how dispersal and movement covary with behavioural phenotypes.

This is a registration of a meta-analysis that will broadly address the short- and long-term fitness costs and benefits of dispersal.

Background Patients admitted to intensive care units are frequently exposed to pathogenic microorganisms present in their environment. Exposure to these microbes may lead to the development of hospital-acquired infections that complicate the illness and may be fatal. Amoeba-associated microorganisms (AAMs) are frequently isolated from hospital water networks and are reported to be associated to cases of community and hospital-acquired pneumonia. Methodology/Principal Findings We used a multiplexed immunofluorescence assay to test for the presence of antibodies against AAMs in sera of intensive care unit (ICU) pneumonia patients and compared to patients at the admission to the ICU (controls). Our results show that some AAMs may be more frequently detected in patients who had hospital-acquired pneumonia than in controls, whereas other AAMs are ubiquitously detected. However, ICU patients seem to exhibit increasing immune response to AAMs when the ICU stay is prolonged. Moreover, concomitant antibodies responses against seven different microorganisms (5 Rhizobiales, Balneatrix alpica, and Mimivirus) were observed in the serum of patients that had a prolonged ICU stay. Conclusions/Significance Our work partially confirms the results of previous studies, which show that ICU patients would be exposed to water amoeba-associated microorganisms, and provides information about the magnitude of AAM infection in ICU patients, especially patients that have a prolonged ICU stay. However, the incidence of this exposure on the development of pneumonia remains to assess.

Due to their unique set of biomorphological features, pauciennial (annual and biennial) plants differ substantially from all other plant life forms, including perennial species. Thus, classical approaches to the Russian population biology of plants, which are associated with spectral analysis of ontegenic states, often have quite limited applicability or are inapplicable in general, i.e. the development of special approaches is required. The extremely high plasticity of pauciennials, as well as ontogenetic multivariation, results in a high heterogenity of the rhythms and rates of development, life state, and reproductive capacity (fecundity); thus, long-term observations (monitoring) on permanent plots with registration of the size of individuals by the number of phytomers (modules) in the dynamics and phenophases. The naturally asynchronous germination of seeds in populations of many species leads to polycohortness, the subsequent appearance of seedling cohorts among the individuals of active parts in populations. Each subsequent group or cohort appears to develop in the more stressful variants of ecological regimes (increased competition) prevailing at the time and therefore consist of smaller individuals. Analysis of frequency distributions of size (biomass) spectra usually reveals a positive skewness and, in the case of correct usage of statistics, can provide valuable information on populations of pauciennial plants, their life span, and a detailed description of features of their specific life forms. In contrast to the earlier declared view, the total fecundity of the individuals of the smallest size classes is much higher than that of the few highly fertile, largest individuals. The smallest individuals are most effective in terms of reproduction; they have a high reproductive effort, while isometry is common in pauciennials populations.

Citrus black spot (CBS), caused by Phyllosticta citricarpa, is a disease that affects citrus worldwide. In different regions of the world where both mating types occur, reports differ as to whether asexually produced pycnidiospores play an important role in the epidemiology of CBS and fruit infections. Therefore, we investigated the potential role of pycnidiospores in two lemon orchards in South Africa by using microsatellite-based analysis of fruit populations over time (two seasons) and space (distance). The two orchards were situated in the semiarid North West province (NW) and subtropical Mpumalanga province (MP). Each population contained both mating types in 1:1 ratios, and linkage disequilibrium analysis indicated a random mating population. A total of 109 and 94 multilocus genotypes (MLGs) were detected across the two seasons in the NW and MP orchards, respectively. Psex analyses indicated that most MLGs probably resulted from sexual reproduction, but there were six predominant MLGs in each orchard that were probably replicated via asexual reproduction. Each of the predominant MLGs was monomorphic for mating type. In the NW, five predominant and widespread MLGs caused 46 and 44% of the fruit infections in the two seasons, whereas in MP, three MLGs caused 34 and 48% of the infections. Asexual reproduction in both orchards was supported by low MLG evenness values in all populations. In both orchards, distance was not a reliable predictor of population genetic substructuring or season. Populations of P. citricarpa in the MP and NW orchards were significantly genetically differentiated from each other.

This is a protocol for a systematic map of studies that have examined the impacts of natural disturbances on soil fauna in forest ecosystems. The systematic map aims to characterise these studies, identify opportunities for future quantitative synthesis, and identify knowledge gaps that warrant further primary studies.

This is a protocol for a systematic map of studies that have examined the impacts of natural disturbances on soil fauna in forest ecosystems. The systematic map aims to characterise these studies, identify opportunities for future quantitative synthesis, and identify knowledge gaps that warrant further primary studies.

The interaction between an individual’s phenotype and its environment can provide insights into the origin and extent of local adaptation. Understanding how an individual may adapt and match its phenotype to a particular environment is therefore a key objective of molecular ecology. Here, we will use an RNA-sequencing approach to compare the blood mRNA levels of Antarctic fur seals from two colonies of contrasting population density (low and high) at two seasonal time points (shortly after birth and shortly before weaning). Samples were collected from mother-pup pairs during two subsequent breeding seasons (2018-19 and 2019-20) on the sub-Antarctic island of Bird Island, South Georgia. This is an exploratory study to better understand (a) how gene expression profiles differ among individuals experiencing low and high density conditions, (b) how gene expression profiles change throughout the season (from birth to weaning), (c) how gene expression profiles reflect differing pressures on mothers and pups, and (d) how gene expression profiles reflect inter-annual variation. This amounts to four key pair-wise comparisons in our differential gene expression design matrix (low vs high density, birth vs weaning, mother vs pup, 2018-19 vs 2019-20) and interaction terms thereof.

Canadian butterflies are an iconic and well-loved group of insects. Understanding species ecological tendencies and genetic makeup is crucial for conservation and sustainability of butterfly populations on a large scale. Even having a brief overview of select butterfly species deepens one's appreciation for these small creatures. My USRI project focused on mark-recapture programs to study population dynamics and genetic sampling for the Mottled Duskywing, Bog Copper, and Rocky Mountain Apollo butterflies, as well as PCR testing for the presence of Wolbachia, an infectious bacteria, in Mottled Duskywing.

Facultative sexual organisms combine sexual and asexual reproduction within a single life cycle, often switching between reproductive modes depending on environmental conditions. These organisms frequently inhabit variable seasonal environments, where favourable periods alternate with unfavourable periods, generating temporally varying selection pressures that strongly influence life history decisions and hence population dynamics. Due to the rapidly accelerating changes in our global environment today, understanding the dynamics of and genetic changes in facultative sexual populations inhabiting seasonal environments is critical to assess and prepare for additional challenges that will affect such ecosystems. In this study we aimed at obtaining insights of the seasonal population dynamics of the facultative sexual freshwater cnidarian Hydra oligactis through a combination of Restriction-site Associated Sequencing (RAD-Seq) genotyping and the collection of phenotypic data on the reproductive strategy of field-collected hydra strains. We found no significant genetic change during the two years in the study population. Clone lines were detected between seasons and even years, suggesting that clonal lineages can persist for a long time in a natural population. We also found that distinct genotypes differ in sexual reproduction frequency, but these differences did not affect whether genotypes reappeared across samplings. Our study describes changes in population genetic structure across the seasons in a hydra population for the first time, providing key insights into the biology of the species, while also contributing to understanding the population biology of facultative sexual species inhabiting freshwater ecosystems.

The design and evaluation of control programs for soil-transmitted helminths (STHs) is based on surveillance data recording measurements of egg counts in the stool of infected individuals, which underpin estimates of the prevalence and average intensity of infection. There is considerable uncertainty around these measurements and their interpretation. The uncertainty is composed of several sources of measurement error and the limit of detection of fecal smear tests on the one hand, and key assumptions on STH biology on the other hand, including assumptions on the aggregation of worms within hosts and on the impact of density-dependent influences on worm reproduction. Using 2 independently developed models of STH transmission we show how different aspects of STH biology and human behavior impact on STH surveillance and control programs and how accounting for uncertainty can help to develop optimal and sustainable control strategies to meet the World Health Organization (WHO) morbidity target for STHs.

BackgroundMosquito control has the potential to significantly reduce malaria burden on a region, but to influence public health policy must also show cost-effectiveness. Gaps in our knowledge of mosquito population dynamics mean that mathematical modelling of vector control interventions have typically made simplifying assumptions about key aspects of mosquito ecology. Often, these assumptions can distort the predicted efficacy of vector control, particularly next-generation tools such as gene drive, which are highly sensitive to local mosquito dynamics.MethodsWe developed a discrete-time stochastic mathematical model of mosquito population dynamics to explore the fine-scale behaviour of egg-laying and larval density dependence on parameter estimation. The model was fitted to longitudinal mosquito population count data using particle Markov chain Monte Carlo methods.ResultsBy modelling fine-scale behaviour of egg-laying under varying density dependence scenarios we refine our life history parameter estimates, and in particular we see how model assumptions affect population growth rate (Rm), a crucial determinate of vector control efficacy.ConclusionsSubsequent application of these new parameter estimates to gene drive models show how the understanding and implementation of fine-scale processes, when deriving parameter estimates, may have a profound influence on successful vector control. The consequences of this may be of crucial interest when devising future public health policy.Graphical abstract

Apple growers in the Mid-Atlantic region of the United States have been reporting an increase in losses to bitter rot of apple and are requesting up-to-date management recommendations. Management is complicated by variations in apple cultivar susceptibility, temperature, rainfall, and biology of the Colletotrichum spp. that cause bitter rot. Over 500 apple fruit with bitter rot were obtained from 38 orchards across the Mid-Atlantic and the causal species were identified as Colletotrichum fioriniae and C. nymphaeae of the C. acutatum species complex and C. chrysophilum, C. noveboracense, C. siamense, C. fructicola, C. henanense, and C. gloeosporioides sensu stricto of the C. gloeosporioides species complex, the latter two being first reports. Species with faster in vitro growth rates at higher temperatures were more abundant in warmer regions of the Mid-Atlantic, while those with slower growth rates at higher temperatures were more abundant in cooler regions. Regional bloom dates are earlier and weather data show a gradual warming trend that likely influenced but was not necessarily the main cause of the recent increase in bitter rot in the region. A grower survey of apple cultivar susceptibility showed high variation, with the increase in acres planted to the highly susceptible cultivar Honeycrisp broadly corresponding to the increase in reports of bitter rot. These results form a basis for future studies on the biology and ecology of the Colletotrichum spp. responsible, and suggest that integrated bitter rot management must begin with selection of less-susceptible apple cultivars.

Population Biology of Palm Heart (Euterpe edulis Martius–Arecaceae) in Managed Landscape Units in Southern Brazil. The use of natural areas throughout history has created landscape mosaics. The landscape units assessed in this study on Euterpe edulis populations in southern Brazil consisted of secondary forests, rural homegardens, and sites inside a protected area (PA). Our goal was to compare the level of conservation of E. edulis populations in three landscape units in order to verify the influence of management practices. Twelve homegardens, four areas in secondary forests in rural properties, and several areas in a sustainable use PA were assessed. Population structure differed among the three groups of landscape units. The population density of E. edulis was higher in smaller size classes (seedling, young I) in the PA and in larger size classes (reproductive) in homegardens, whereas both situations occurred in secondary forests. Genetic divergence varied 0.001 and 0.0023 between landscape groups. The highest variation in genetic diversity indexes was recorded in homegardens, with the presence of alleles that were not found in the protected area. Genetic diversity indexes varied less in the protected area, while the average values were higher in secondary forests. We therefore concluded that the sites assessed outside protected areas also contribute to the conservation of this palm species.

Context Mangroves and intertidal habitats have been identified as particularly challenging environments for bait application within both tropical and temperate environments, because bait applied to areas that are tidally inundated could degrade rapidly or become inaccessible to rats. Aims To determine rat density, ranging behaviour and probability of detection using different monitoring devices; additionally, to determine the availability (persistence, durability and uptake) of rodenticide baits within tidally inundated mangrove habitats. Methods The population biology of black rats (Rattus rattus) was studied in two contrasting mangrove habitats on Europa Island, and spatially explicit mark–recapture studies were performed to estimate densities and activity of rats. A series of bait availability trials was conducted to determine the durability of rodenticide baits on the ground and uptake in the canopy (‘bait bolas’). Key results Black rats were found to be abundant in mangrove, and despite daily tidal inundation, still maintained ranging behaviour consistent with rats in adjacent terrestrial habitats. Larger rodenticide bait blocks remained within tidally inundated habitat throughout tidal cycles and were available and remained palatable to rats for at least three consecutive nights, although strong bait competition occurred with crabs. Bait bolas were available in mangrove canopy exclusively to rats and consumption commenced on the first night. Conclusions The results provide evidence that mangrove habitats are an important habitat for rats, but the biology of rats in these habitats does not meaningfully differ from adjacent terrestrial habitats. With the use of larger rodenticide blocks, tidal inundation does not affect bait availability, but crabs remain a major competitor for these baits. Alternatively, the present study revealed that bait bolas limit bait access to rats alone. Development as an aerial eradication technology should be also recommended. Implications These results provide a proof of concept that eradication of rats from tidally inundated habitats such as mangrove should be possible with only small modifications to current best practice.

Background Dotillid crabs are introduced as one common dwellers of sandy shores. We studied the ecology and growth of the sand bubbler crab Scopimera crabricauda Alcock, 1900, in the Persian Gulf, Iran. Crabs were sampled monthly by excavating nine quadrats at three intertidal levels during spring low tides from January 2016 to January 2017. Results Population data show unimodal size-frequency distributions in both sexes. The Von Bertalanffy function was calculated at CWt = 8.76 [1 − exp (− 0.56 (t + 0.39))], CWt = 7.90 [1 − exp (− 0.59 (t + 0.40))] and CWt = 9.35 [1 − exp (− 0.57 (t + 0.41))] for males, females, and both sexes, respectively. The life span appeared to be 5.35, 5.07, and 5.26 years for males, females, and both sexes, respectively. The cohorts were identified as two age continuous groups, with the mean model carapace width 5.39 and 7.11 mm for both sexes. The natural mortality (M) coefficients stood at 1.72 for males, 1.83 for females, and 1.76 years−1 for both sexes, respectively. The overall sex ratio (1:0.4) was significantly different from the expected 1:1 proportion with male-biased. Recruitment occurred with the highest number of annual pulse once a year during the summer. Conclusions The results, which show slow growth, emphasize the necessity of proper management for the survival of the stock of S. crabricauda on the Iranian coast of the Persian Gulf.

Populations are typically defined as spatially contiguous sets of individuals, but large populations of social species can be composed of discrete social communities that often overlap in space. Masai giraffes (Giraffa camelopardalis tippelskirchi) of Tanzania live in distinct social subpopulations that overlap spatially, enabling us to simultaneously explore environmental and social factors correlated with demographic variation in a metapopulation of >1,400 adult females and calves. We considered statistically distinct communities in the social network as subpopulations and tested for variation among the 10 subpopulations in adult female survival, calf survival, and reproductive rate (calf‐to‐adult female ratio). We then related variation in demographic rates among subpopulations to differences in vegetation, soil type, proximity to 2 types of human settlements, local giraffe population density, and social metrics of relationship strength and exclusivity among adult females. We did not find any among‐subpopulation effects on adult female survival, suggesting adult female survival is buffered against environmental heterogeneity among subpopulations. Variation in calf demographic rates among subpopulations were correlated with vegetation, soils, anthropogenic factors, and giraffe population density but not with adult female relationship metrics, despite substantial spatial overlap. Subpopulations with more dense bushlands in their ranges had lower calf survival probabilities, and those closer to human settlements had higher reproductive rates, possibly because of spatial gradients in natural predation. Reproductive rates were higher in subpopulations with more volcanic soils, and calf survival probabilities were greater in subpopulations with higher local adult female densities, possibly related to higher‐quality habitat associated with fertile soils or lower predation risk, or to greater competitive ability. The variation in fitness among subpopulations suggests that giraffes do not move unhindered among resource patches to equalize reproductive success, as expected according to an ideal free distribution. The differences in calf survival and reproductive rates could rather indicate intercommunity differences in competitive ability, perception, learning, or experience. Our approach of comparing demography among spatially overlapping yet distinct socially defined subpopulations provides a biologically meaningful way to quantify environmental and social factors influencing fine‐scale demographic variation for social species. published

Organochlorine pesticides (OCPs) have been used worldwide on an enormous scale over the last century but are banned globally due to environmental persistence and ecotoxicity in recent decades. The long-term effects of OCP ban for agricultural use in China since 1983 on the reproductive health of small terrestrial mammals have never been evaluated in the field. We examined the residue dynamics of OCPs and the reproductive performance of Chinese striped hamsters (Cricetulus barabensis) in North China Plain during 1983-2010 and concluded that the exposure levels of OCPs in hamsters drastically decreased from 2900 ± 740 to 25.2 ± 6.88 ng/g with an average half-life of 5.08 yrs, coinciding with the observed reproductive recovery of hamsters. The population-based reproductive performance of hamsters was significantly and negatively associated with OCP exposure levels after adjusting the contributions from climate and population density factors, indicating that the ban of OCPs has facilitated the reproductive recovery of hamsters by up to 81% contribution. Our findings suggest that the OCP ban is effective to restore reproduction of small terrestrial mammals. Integration of population biology and environmental science is essential to assess the impacts of persistent organic pollutants on ecological safety and biodiversity loss under accelerated global change.

The population biology of the three sympatric species of caprellids (Caprella danilevskii, C. equilibra and C. scaura) associated with a Sargassum bed was studied in the northern coast of São Paulo state, Brazil. Samplings were carried out monthly from October 2010 to February 2012. In each month, 25 fronds of Sargassum were randomly collected through snorkelling. The caprellids were identified, counted, classified by sex and separated into size classes. Caprella danilevskii was the most abundant species, with 14939 specimens recorded. The body size of males was larger than that of females for C. danilevskii and C. equilibra, and the sex ratio was skewed toward males for all species. The size-frequency distribution was polymodal for C. danilevskii and C. scaura and bimodal for C. equilibra. Mature males of C. scaura and C. equilibra were recorded in all size classes. The last size classes (from 8.3–9.4 to 12.7–13.8 mm) were dominated by mature males. Mature and ovigerous females were more frequent in intermediate size classes. Significant temporal variations were recorded for the three species with higher densities in spring and summer that are related to higher algal biomass; but other environmental factors are certainly important for explaining caprellid density variation., Se estudió la biología poblacional de las tres especies simpátricas de caprélidos (Caprella danilevskii, C. equilibra y C. scaura) asociadas a un lecho de Sargassum en la costa norte del estado de São Paulo, Brasil. Los muestreos se realizaron mensualmente desde octubre de 2010 hasta febrero de 2012. En cada mes, se recolectaron al azar 25 frondas de Sargassum a través de snorkel. Los caprélidos fueron identificados, contados, clasificados por sexo y separados en clases de tamaño. Caprella danilevskii fue la especie más abundante, con 14939 ejemplares registrados. El tamaño corporal de los machos fue mayor que el de las hembras para C. danilevskii y C. equilibra y la proporción de sexos se inclinó hacia los machos para todas las especies. La distribución de frecuencia de tamaño fue polimodal para C. danilevskii y C. scaura y bimodal para C. equilibra. Se registraron machos maduros de C. scaura y C. equilibra en todas las clases de tamaño. Las últimas clases de tamaño (de 8,3–9,4 a 12,7–13,8 mm) estuvieron dominadas por machos maduros. Las hembras maduras y ovígeras fueron más frecuentes en clases de tamaño intermedio. Se registraron variaciones temporales significativas para las tres especies con mayores densidades en primavera y verano que están relacionadas con una mayor biomasa de algas; pero otros factores ambientales son ciertamente importantes para explicar la variación de la densidad de los caprélidos.

Common scab (CS) is a potato disease that significantly decreases the market value of potato tubers after the development of necrotic lesions on their surface. Streptomyces scabiei is the main causal agent of CS; however, other closely related species, including S. acidiscabies and S. turgidiscabies, have also been shown to cause the disease. In this study, we characterized the genetic and phenotypic diversity of Streptomyces spp. causing CS in Prince Edward Island, the main potato-producing province in Canada. Two hundred and ninety-six pathogenic Streptomyces spp. isolates were retrieved from diseased tubers harvested from six fields located across a longitudinal geographical gradient. Genome fingerprinting analyses using repetitive elements PCR (ERIC- and BOX-PCR) revealed 14 distinct genetic groups. Thirteen groups were taxonomically affiliated with S. scabiei, whereas the fourteenth group was affiliated with S. acidiscabies. Their geographical distribution was characterized and revealed that on average between six and eight different genetic groups were detected per field, with variable abundance. Virulence assays showed strong differences in virulence between the genetic groups, ranging from low to highly virulent. Interestingly, pathogenic Streptomyces spp. populations in each field seem to be dominated by the most virulent genetic groups. The results obtained will contribute to better understanding of the population dynamic of pathogenic Streptomyces spp. causing CS of potato and promoting the development of more efficient detection and intervention tools to manage this important potato disease.

International audience; Aphanomyces root rot is a major disease in many pea growing regions worldwide. Development of resistant varieties is necessary to manage the disease. Near isogenic lines (NILs) carrying resistance alleles at main quantitative trait loci (QTLs) were developed by marker-assisted backcrossing. This study aimed to evaluate the aggressiveness of diverse French isolates of Aphanomyces euteiches on NILs carrying different resistance QTLs. Forty-three A. euteiches isolates from different French pea growing regions were tested for aggressiveness on eight NILs carrying single or combinations of resistance QTLs and two susceptible or resistant control lines, in controlled conditions. Three clusters of isolates, unrelated to geographical origin, were identified, including 37, 56, and 7% of isolates with high, moderate, and low average levels of aggressiveness, respectively. Three groups of pea lines were also identified. The first group consisted of a pea resistant control line, moderately to highly resistant to all of the isolates. The second group included five NILs carrying a major-effect resistance allele at QTL Ae-Ps7.6, with a medium to broad range of effects on the isolates. The third group consisted of three NILs carrying minor-effect resistance alleles, with a narrow range of effects on the isolates. The results suggest that highly aggressive isolates occur naturally, which may be selected by future partially resistant pea varieties carrying QTLs and increase the risk of erosion of QTL effect. QTL pyramiding strategies for a higher level and a broader range of effect of quantitative resistance on A. euteiches populations will be required for breeding for durable pea resistant varieties.