1. A refined genome phage display methodology delineates the human antibody response in patients with Chagas disease
- Author
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Lea Campos de Oliveira, Ricardo J. Giordano, Walter Colli, Natalia Bueno Pereira, Maria Júlia Manso Alves, Jhonatas Sirino Monteiro, Andréia Kuramoto, Carlos Hernique Gomes, Edecio Cunha-Neto, André Azevedo Reis Teixeira, Renata Pasqualini, Luis Rodriguez Carnero, Fenny H F Tang, João C. Setubal, Ester Cerdeira Sabino, Regina Garrini, and Wadih Arap
- Subjects
0301 basic medicine ,Chagas disease ,Phage display ,Systems biology ,Science ,02 engineering and technology ,Computational biology ,Genome ,Article ,Epitope ,03 medical and health sciences ,Antigen ,medicine ,Trypanosoma cruzi ,Multidisciplinary ,biology ,Systems Biology ,021001 nanoscience & nanotechnology ,biology.organism_classification ,medicine.disease ,030104 developmental biology ,biology.protein ,Parasitology ,Antibody ,0210 nano-technology ,Sequence Analysis - Abstract
Summary Large-scale mapping of antigens and epitopes is pivotal for developing immunotherapies but challenging, especially for eukaryotic pathogens, owing to their large genomes. Here, we developed an integrated platform for genome phage display (gPhage) to show that unbiased libraries of the eukaryotic parasite Trypanosoma cruzi enable the identification of thousands of antigens recognized by serum samples from patients with Chagas disease. Because most of these antigens are hypothetical proteins, gPhage provides evidence of their expression during infection. We built and validated a comprehensive map of Chagas disease antibody response to show how linear and putative conformation epitopes, many rich in repetitive elements, allow the parasite to evade a buildup of neutralizing antibodies directed against protein domains that mediate infection pathogenesis. Thus, the gPhage platform is a reproducible and effective tool for rapid simultaneous identification of epitopes and antigens, not only in Chagas disease but perhaps also in globally emerging/reemerging acute pathogens., Graphical abstract, Highlights • Genomic shotgun phage display (gPhage) of eukaryotes is feasible and promising. • gPhage allows rapid antigen ID and epitope mapping, including 3D structures. • Conformation epitopes can be identified and validated by using the gPhage platform. • Most Chagas disease antigens are hypothetical proteins rich in repetitive elements., Parasitology; Sequence analysis; Systems biology
- Published
- 2021