1. Promoter and methylation status analysis revealed the importance of PkGES gene in picroside biosynthesis in Picrorhiza kurrooa
- Author
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Bharati Lalhal Barsain, Vipin Hallan, and Sudesh Kumar Yadav
- Subjects
0106 biological sciences ,0301 basic medicine ,Genetics ,Sequence analysis ,Plant Science ,Methylation ,Biology ,01 natural sciences ,WRKY protein domain ,03 medical and health sciences ,030104 developmental biology ,DNA methylation ,Primer walking ,Coding region ,Epigenetics ,Agronomy and Crop Science ,Gene ,010606 plant biology & botany ,Biotechnology - Abstract
Picrorhiza kurrooa Royle ex Benth., an important high altitude plant produces picrosides, the monoterpenoids of high therapeutic value. Production of geraniol in the iridoid branch of the picroside biosynthetic pathway is a key step in the biosynthesis of picrosides. Geraniol synthase, catalyzes the conversion of geranyl pyrophosphate into geraniol. In view of this, here we report the identification and sequence analysis of PkGES promoter. The PkGES promoter sequence was isolated following a directional genome walking approach. Presence of similar cis elements such as GT1 consensus elements, LTREs, DREs, WRKY binding elements, PREATPRODH motif, BIHD1OS motif, SEBFCONSSTPR10A motif and MeJA responsive elements in the promoter sequence of PkGES documented its multiple stress responsive characteristic signifying its role in adaptation. Further, PkGES showed differential expression pattern in leaves, rhizome and roots. To elucidate whether the differential expression pattern of PkGES correlates with its epigenetic regulation, DNA methylation analysis of promoter as well as coding region of PkGES was conducted. The DNA methylation levels in the promoter sequence of PkGES gene were found to be dominated at CG followed by CHH and CHG sequence contexts. Epigenetic regulation (DNA methylation) of promoter as well as coding region of PkGES suggested its role in the regulation of PkGES transcripts in diverse tissues. The present study has revealed the presence of several stress inducible cis elements in PkGES promoter sequence and its tissue specific epigenetic regulation in P. kurrooa.
- Published
- 2019
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