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The Pearl River Delta (PRD) region on the southeast coast of China has long been known as a highly productive fishing ground. Since the late 1980s, fishing pressure in the PRD has been intense, which warrants concerns of potential fishery-related impacts on the food resources and foraging ecology of apex marine predators in this region, such as the Indo-Pacific humpback dolphin (Sousa chinensis). In this study, we examined 54 stomachs with food remains, collected from beached carcasses of humpback dolphins recovered during fifteen years between 2003 and 2017. The 6043 identified prey items represent 62 teleost taxa, primarily small estuarine fish, but also larger reef fish. The dolphins appear to be opportunistic foragers, hunting across the water-column, with preference for shoaling and meaty fishes (e.g. Chrysochir aureus IRI% = 38.6%, Johnius belangerii IRI% = 23.1%, Mugil cephalus IRI% = 14.0%). Our findings suggest a dietary shift in recent years, from primarily demersal (as previously reported) to greater intake of neritic and pelagic fish. Dolphin foraging group size has decreased in recent years, which corresponds with declining size and numbers of prey items retrieved from dolphin stomachs. We suggest that these are indicators of declining food resources. Faced with a shortage of preferred prey, humpback dolphins may have broadened their dietary spectrum to maintain their daily energy intake, while their foraging group size decreased in response to the altered tradeoff between the costs and benefits of group foraging. This article is protected by copyright. All rights reserved.

Estimating the degree of isolation or gene flow is central to understanding population dynamics and conservation. In this study, we used both mitochondrial and nuclear markers to investigate the genetic structure of Indo-Pacific humpback dolphins (genus Sousa) in China. Contrary to previous photo-identification and genetic studies, we found no evidence for population genetic structure or inter-population gene flow across the geographical scale examined. Significant inbreeding, which seems to support genetic isolation to some extent, was within expectation as a result of low genetic diversity in a random-mating system. Overall, the Indo-Pacific humpback dolphins in China were characterized by low genetic diversity on both maternal and bi-parental markers. While significant steps have been taken towards implementing marine reserves, our study highlights the critical need for fine-scale genetic and ecological monitoring programs and a coordinated approach to secure the survival of Indo-Pacific humpback dolphins in Chinese waters.

Estimates of demographic parameters and predictive modeling of population viability furnish baseline evidence for informed management of species and populations. There are very few examples of such approaches involving cetaceans due to often limited fundamental data, which frequently impairs the effectiveness of conservation. In this study, we estimate demographic parameters for the Indo-Pacific humpback dolphins, Sousa chinensis, from the Pearl River Estuary (PRE), China, based on a life-table constructed using data from stranded animals. We apply current abundance estimates and use an individual-based Leslie-matrix model to predict the population fluctuation by factoring in parameter uncertainty and demographic stochasticity. Our estimates indicate a continuous rate of population decline of 2.46% per annum, albeit with considerable variation. If the estimated rate of decline remains constant, 74.27% of the current population is projected to be lost after three generations and 57.60% of model simulations meet the criteria for classification as endangered under Criterion A3, applying IUCN Red List Categories and Criteria Version 3.1. However, as PRE is among the fastest economically growing regions of China and the world, the estimated rate of decline may further accelerate in a near future and the projected risk of extinction may be higher. Effective conservation measures are much needed and should be seen as a matter of urgency in management plans targeting PRE and environs.

To understand physiological acclimation of psammophyte to repeated soil drought and rewatering, two psammophytes (Setaria viridis and Digitaria ciliaris) were subjected to three cycles of soil drought and rewatering. The response process of leaf relative water content (RWC), membrane permeability, lipid peroxidation, gas exchange characteristics, antioxidant enzymes, soluble protein, and free proline was examined. Leaf RWC, the net photosynthesis rate, stomatal conductance, and water use efficiency decreased, while membrane permeability, lipid peroxidation, intercellular CO2 concentration, soluble protein, and free proline increased during three soil drought periods for both psammophytes. These physiological characteristics were recovered to the control levels following rewatering for 4 days. However, activities of SOD, CAT, and POD were induced continuously under soil drought conditions, and remained higher than those in the control throughout the whole experiment period, which agrees with our hypothesis that drought hardening activates defensive systems of both psammophytes continuously. Decreasing level of leaf RWC and increasing levels of leaf membrane permeability and lipid peroxidation were suppressed with increasing the number of drought cycles, suggesting that drought hardening alleviates damages of both psammophytes and improves their drought tolerance and acclimation to soil drought conditions in the future. Additionally, the photosynthesis decreased more slowly in the subsequent drought cycles than in the first cycle, allowing both psammophytes to maximize assimilation in response to repeated soil drought conditions. Thus, both psammophytes acclimatize themselves to repeated soil drought.

*Summary All above-ground plant organs are derived from shoot apical meristems (SAMs). Global analyses of gene expression were conducted on maize (Zea mays L.) SAMs to identify genes preferentially expressed in the SAM. The SAMs were collected from 14-day-old B73 seedlings via laser capture microdissection (LCM). The RNA samples extracted from LCM-collected SAMs and from seedlings were hybridized to microarrays spotted with 37 660 maize cDNAs. Approximately 30% (10 816) of these cDNAs were prepared as part of this study from manually dissected B73 maize apices. Over 5000 expressed sequence tags (ESTs) (about 13% of the total) were differentially expressed (P < 0.0001) between SAMs and seedlings. Of these, 2783 and 2248 ESTs were up- and down-regulated in the SAM, respectively. The expression in the SAM of several of the differentially expressed ESTs was validated via quantitative RT-PCR and/or in situ hybridization. The up-regulated ESTs included many regulatory genes including transcription factors, chromatin remodeling factors and components of the gene-silencing machinery, as well as about 900 genes with unknown functions. Surprisingly, transcripts that hybridized to 62 retrotransposon-related cDNAs were also substantially up-regulated in the SAM. Complementary DNAs derived from the LCM-collected SAMs were sequenced to identify additional genes that are expressed in the SAM. This generated around 550 000 ESTs (454-SAM ESTs) from two genotypes. Consistent with the microarray results, approximately 14% of the 454-SAM ESTs from B73 were retrotransposon-related. Possible roles of genes that are preferentially expressed in the SAM are discussed.

It has been widely reported that the major histocompatibility complex (MHC) is under balancing selection due to its immune function across terrestrial and aquatic mammals. The comprehensive studies at MHC and other neutral loci could give us a synthetic evaluation about the major force determining genetic diversity of species. Previously, a low level of genetic diversity has been reported among the Indo-Pacific humpback dolphin (Sousa chinensis) in the Pearl River Estuary (PRE) using both mitochondrial marker and microsatellite loci. Here, the expression and sequence polymorphism of 2 MHC class II genes (DQB and DRB) in 32 S. chinensis from PRE collected between 2003 and 2011 were investigated. High ratios of non-synonymous to synonymous substitution rates, codon-based selection analysis, and trans-species polymorphism (TSP) support the hypothesis that balancing selection acted on S. chinensis MHC sequences. However, only 2 haplotypes were detected at either DQB or DRB loci. Moreover, the lack of deviation from the Hardy-Weinberg expectation at DRB locus combined with the relatively low heterozygosity at both DQB locus and microsatellite loci suggested that balancing selection might not be sufficient, which further suggested that genetic drift associated with historical bottlenecks was not mitigated by balancing selection in terms of the loss of MHC and neutral variation in S. chinensis. The combined results highlighted the importance of maintaining the genetic diversity of the endangered S. chinensis.

The relationship between active oxygen species (AOS) and membrane damage, and between antioxidant enzyme activity and chilling tolerance has been documented, but the mechanisms responsible for perennial forage grass to survive winter with temperatures at -30°C in temperate alpine regions is not well understood. In this study, the seasonal pattern of enzymatic antioxidant systems superoxide dismutase (EC 1.15.1.1), catalase (EC 1.11.1.6), peroxidase (EC 1.11.1.7), ascorbate peroxidase (EC 1.11.1.11) and lipid peroxidation in roots and leaves of alpine perennial grasses grown in their natural environment were investigated to understand the role of the enzymatic antioxidant system in freezing tolerance of perennial grasses. Four grasses, Poa sphyondylodes Trine., Bromus inermis Leyss., Bromus sinensis Keng. and Elymus nutans Griseb., were established in alpine conditions in 1993. The grasses were sampled at approximately semi-monthly intervals in the autumn of 1995 and spring of 1996. The results showed that leaves were dead in the autumn and membrane damage seems to play a key role in the decline of this organ. Antioxidant enzyme activities of the roots strongly changed with declining temperature in the autumn and winter or increasing temperature in the spring. With the decrease in temperature in the autumn the antioxidant enzyme activities increased rapidly, reaching maximum values in early November and then slowly declining during the following winter period, although they were still higher than in September In the spring, antioxidant enzymes activities increased again in the roots with the rise of temperature from mid April to early May when the shoots began re-growth. In contrast, thiobarbituric acid-reactive substances content in the roots increased markedly in the autumn, reaching maximum values in early October and remaining constant with little fluctuation during the following winter. In the autumn when the roots experienced winter acclimation, the formation of freezing tolerance in the roots was correlated with the activities of the antioxidant enzyme, indicating that antioxidant activity systems in the roots played an important role in limiting the production of free radicals to protect membrane integrity. Freezing tolerance in alpine grasses correlated with an increased capacity to scavenge or detoxify activated AOS by the antioxidant enzymatic system. AOS accumulated with decreasing temperature in early cold acclimation may be an inducer in activating the antioxidant enzyme defence system for the formation of freezing tolerance in roots.

Effects of sand burial depth on seedling growth of two dominant shrubs in Horqin Sandy Land were studied. Nine treatments of sand burial depth were designed, growth characteristics including survival rates and seedling height were measured. The results showed that sand burial decreased the survival rates of Artemisia halodendron seedlings, but had little effect on Caragana microphylla seedlings when the burial depth was shallow. The upper threshold limit of Caragana microphylla seedlings to resist sand burial stress is 100% of their height, Artemisia halodendron seedlings are more resistant to sand burial, can even survive when the burial depth reached to 8 cm higher than their height. The response of seedling height to sand burial stress between two species is different, contrary to Artemisia halodendron, seedling height of Caragana microphylla was stimulated in shallow depth.

Effects of sand burial depth on seedling growth of three dominant annual herbaceous plants in Horqin Sandy Land were studied. Nine treatments of sand burial depth were designed, growth characteristics including survival rates, seedling height, total biomass and its allocation were measured. The results showed that shallow burial depth stimulated the survival rates of three species, however, severe sand burial is fatal to plants. The upper threshold limit of Setaria viridis and Corispermum macrocarpum seedlings to sand burial stress is 100% of their height, Agriophyllum squarrosum seedling has the strongest adaptability to sand burial, can even survive when the burial depth reached to 10 cm higher than its height. The response of seedling height and biomass among three species is different, contrary to Corispermum macrocarpum, seedling height of Setaria viridis and Agriophyllum squarrosum were stimulated in shallow depth. Compare with the other two species, Agriophyllum squarrosum allocated more to roots, this may be one of its adjustment mechanism to sand burial.

The shoot apical meristem (SAM) maintains a pool of indeterminate cells within the SAM proper, while lateral organs are initiated from the SAM periphery. Laser microdissection–microarray technology was used to compare transcriptional profiles within these SAM domains to identify novel maize genes that function during leaf development. Nine hundred and sixty-two differentially expressed maize genes were detected; control genes known to be upregulated in the initiating leaf (P0/P1) or in the SAM proper verified the precision of the microdissections. Genes involved in cell division/growth, cell wall biosynthesis, chromatin remodeling, RNA binding, and translation are especially upregulated in initiating leaves, whereas genes functioning during protein fate and DNA repair are more abundant in the SAM proper. In situ hybridization analyses confirmed the expression patterns of six previously uncharacterized maize genes upregulated in the P0/P1. P0/P1-upregulated genes that were also shown to be downregulated in leaf-arrested shoots treated with an auxin transport inhibitor are especially implicated to function during early events in maize leaf initiation. Reverse genetic analyses of asceapen1 (asc1), a maize D4-cyclin gene upregulated in the P0/P1, revealed novel leaf phenotypes, less genetic redundancy, and expanded D4-CYCLIN function during maize shoot development as compared to Arabidopsis. These analyses generated a unique SAM domain-specific database that provides new insight into SAM function and a useful platform for reverse genetic analyses of shoot development in maize., Author Summary All the organs of plant shoots are derived from the shoot apical meristem (SAM), a pool of plant stem cells that are both organogenic and self-sustaining. These dual SAM functions take place in distinct yet adjacent meristematic domains; leaves are derived from the peripheral zone (PZ) of the SAM whereas cells lost during organogenesis are replenished from the central zone (CZ). Deciphering the global patterns of differential gene expression within these discrete SAM functional domains is integral toward understanding the molecular-signaling networks that regulate plant development. We utilized laser-microdissection technology to isolate tissues from the SAM crown and center (SAM-proper) and from initiating leaves (P0/P1) at the SAM periphery for use in microarray comparisons of gene expression within these SAM functional domains. Nine hundred and sixty-two maize genes were differentially expressed, confirming that the distinct functions of these meristematic domains involve widespread differences in gene expression. Genes involved in cell division, cell wall biosynthesis, chromatin structure, and RNA binding are especially upregulated in initiating leaves, whereas genes regulating protein stability and DNA repair are upregulated in the SAM proper. Mutations in a D-cyclin gene that was upregulated in the P0/P1 render narrow-leafed mutant plants with defective stomatal patterning, providing functional genetic data for a previously uncharacterized maize gene.

Metabolic flux maps developed from 13C metabolic flux analysis (13C MFA) are effective tools for assessing the response of biological systems to genetic or environmental perturbations, and for identifying possible metabolic engineering targets. Experimental treatments were designed to distinguish between temperature effects prior to, and during incubation in vitro, on primary metabolism in developing soybeans. Biomass accumulation increased with temperature as did carbon partitioning into lipids. The flux through the plastidic oxidative pentose phosphate pathway (pgl(P)) relative to sucrose intake remained fairly constant [ approximately 56% (+/-24%)] when cotyledons were transferred from an optimum growth temperature to varying temperatures in in vitro culture, signifying a rigid node under these conditions. However, pgl(P) flux ranged from 57 to 77% of sucrose intake when growth temperature in planta varied and were cultured in vitro at the same temperature (as the plant), indicating a flexible node for this case. The carbon flux through the anaplerotic reactions catalysed by plastidic malic enzyme (me(P)), cytosolic phosphoenolpyruvate (PEP) carboxylase and the malate (Mal) transporter from the cytosol to mitochondrion varied dramatically with temperature and had a direct influence on the carbon partitioning into protein and oil from the plastidic pyruvate (Pyr) pool. These results of the in vitro culture indicate that temperature during early stages of development has a dominant effect on establishing capacity for flux through certain components of central carbon metabolism.

Metabolic flux quantification in plants is instrumental in the detailed understanding of metabolism but is difficult to perform on a systemic level. Toward this aim, we report the development and application of a computer-aided metabolic flux analysis tool that enables the concurrent evaluation of fluxes in several primary metabolic pathways. Labeling experiments were performed by feeding a mixture of U-13C Suc, naturally abundant Suc, and Gln to developing soybean (Glycine max) embryos. Two-dimensional [13C, 1H] NMR spectra of seed storage protein and starch hydrolysates were acquired and yielded a labeling data set consisting of 155 13C isotopomer abundances. We developed a computer program to automatically calculate fluxes from this data. This program accepts a user-defined metabolic network model and incorporates recent mathematical advances toward accurate and efficient flux evaluation. Fluxes were calculated and statistical analysis was performed to obtain sds. A high flux was found through the oxidative pentose phosphate pathway (19.99 ± 4.39 μmol d−1 cotyledon−1, or 104.2 carbon mol ± 23.0 carbon mol per 100 carbon mol of Suc uptake). Separate transketolase and transaldolase fluxes could be distinguished in the plastid and the cytosol, and those in the plastid were found to be at least 6-fold higher. The backflux from triose to hexose phosphate was also found to be substantial in the plastid (21.72 ± 5.00 μmol d−1 cotyledon−1, or 113.2 carbon mol ±26.0 carbon mol per 100 carbon mol of Suc uptake). Forward and backward directions of anaplerotic fluxes could be distinguished. The glyoxylate shunt flux was found to be negligible. Such a generic flux analysis tool can serve as a quantitative tool for metabolic studies and phenotype comparisons and can be extended to other plant systems.