1. Sleeping beauty genetic screen identifies miR-23b::BTBD7 gene interaction as crucial for colorectal cancer metastasis
- Author
-
Milena S. Nicoloso, Andrea Vecchione, Luigi Zandonà, Gustavo Baldassarre, Erik Dassi, Ilenia Rigo, Vincenzo Canzonieri, Alex H. Mirnezami, Eleonora Grisard, Maurizio Mongiat, Eva Andreuzzi, Giulia Brisotto, Riccardo Spizzo, Eva Biscontin, Fabio Del Ben, Laura Cesaratto, Gian Luca Rampioni Vinciguerra, E. Poletto, Michela Coan, Matteo Turetta, Alice Paulitti, Grisard, E., Coan, M., Cesaratto, L., Rigo, I., Zandona, L., Paulitti, A., Andreuzzi, E., Rampioni Vinciguerra, G. L., Poletto, E., Del Ben, F., Brisotto, G., Biscontin, E., Turetta, M., Dassi, E., Mirnezami, A., Canzonieri, V., Vecchione, A., Baldassarre, G., Mongiat, M., Spizzo, R., and Nicoloso, M. S.
- Subjects
0301 basic medicine ,Research paper ,Colorectal cancer ,Colorectal Neoplasm ,Cell Communication ,Metastasis ,DNA transposons ,0302 clinical medicine ,Neoplasm Metastasis ,Tumor ,Adaptor Proteins ,MicroRNA ,General Medicine ,Extracellular Matrix ,3. Good health ,Neoplasm Metastasi ,Gene Expression Regulation, Neoplastic ,microRNA target ,030220 oncology & carcinogenesis ,RNA Interference ,Colorectal Neoplasms ,Human ,Transposable element ,Epithelial-Mesenchymal Transition ,Colorectal cancer metastasi ,Colorectal cancer metastasis ,Settore BIO/11 - Biologia Molecolare ,Context (language use) ,Biology ,General Biochemistry, Genetics and Molecular Biology ,Cell Line ,03 medical and health sciences ,Gene interaction ,Cell Line, Tumor ,microRNA ,medicine ,Humans ,Genetic Testing ,Adaptor Proteins, Signal Transducing ,Cell Proliferation ,Neoplasm Staging ,Neoplastic ,spleeping beauty ,Signal Transducing ,DNA transposon ,medicine.disease ,MicroRNAs ,030104 developmental biology ,Gene Expression Regulation ,Cancer research ,Human genome ,Genetic screen - Abstract
Background: Metastatic colorectal cancer (CRC) remains a deadly disease. Identifying locally advanced CRC patients with high risk of developing metastasis and improving outcome of metastatic CRC patients require discovering master regulators of metastasis. In this context, the non-coding part of the human genome is still largely unexplored. Methods: To interrogate the non-coding part of the human genome and disclose regulators of CRC metastasis, we combined a transposon-based forward genetic screen with a novel in vitro assay, which forces cells to grow deprived of cell-substrate and cell-cell contacts (i.e. forced single cell suspension assay - fSCS). Findings: We proved that fSCS selects CRC cells with mesenchymal and pro-metastatic traits. Moreover, we found that the transposon insertions conferred CRC cells resistance to fSCS and thus metastatic advantage. Among the retrieved transposon insertions, we demonstrated that the one located in the 3′UTR of BTBD7 disrupts miR-23b::BTBD7 interaction and contributes to pro-metastatic traits. In addition, miR-23b and BTBD7 correlate with CRC metastasis both in preclinical experiments and in clinical samples. Interpretation: fSCS is a simple and scalable in vitro assay to investigate pro-metastatic traits and transposon-based genetic screens can interrogate the non-coding part of the human genome (e.g. miRNA::target interactions). Finally, both Btbd7 and miR-23b represent promising prognostic biomarkers and therapeutic targets in CRC. Fund: This work was supported by Marie Curie Actions (CIG n. 303877) and Friuli Venezia Giulia region (Grant Agreement n°245574), Italian Association for Cancer Research (AIRC, MFAG n°13589), Italian Ministry of Health (GR-2010-2319387 and PE-2016-02361040) and 5x1000 to CRO Aviano.
- Published
- 2019