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Human Cytomegalovirus (HCMV), a prototypic member of the Beta-herpesvirinae subfamily, mainly responsible for congenital disabilities in newborns, cause opportunistic infections in immunocompromised individuals. Its seroprevalence varies across the globe ranging from 50–70 percent in developed countries to 90–100 percent in developing countries. Causing latent infections in the immunocompetent host suggests that it employs several strategies to escape the wrath of the host’s antiviral mechanisms. Apoptosis is an innate cellular response to viral infection, and downregulation of this mechanism by HCMV is a well-established phenomenon. HCMV utilizes its proteins, RNA and miRNA in regulating this response to establish a productive infection in the host. The role of HCMV miRNAs on cellular apoptosis is very interesting, where some miRNAs downregulate but a few upregulate this process. In the present study, we report the antiapoptotic activity of HCMV miRNA, miR-UL-70-3p, on H2O2 induced apoptosis in HEK293T cells. The ectopic expression of this HCMV miRNA in HEK293T cells downregulate the apoptosis, and continuing studies reveal that the proapoptotic gene, Modulator of Apoptosis Protein-1 (MOAP1), is a functional target for this miRNA. We verified the functionality of the binding site predicted in the 3'UTR of MOAP1 in our earlier studies through dual luciferase-based assays using both the wild and mutant 3'UTR’s of MOAP1. The MOAP1 protein levels were significantly downregulated by the miR-UL70-3p, suggesting that the MOAP1 mRNA was degraded after binding with the miR-UL70-3p. Further, the extent of MOAP1 mRNA and its protein inhibitions by HCMV miR-UL70-3p and siRNA of MOAP1 were compared and found that the siRNA of MOAP1 inhibits 69.52 percent of mRNA and 35.67 percent of MOAP1 protein; while the miR-UL70-3p inhibits 46.66 percent MOAP1 mRNA and 21.05 percent MOAP1 protein. Though the inhibitory activity of miR-UL70-3p is not equal to the siRNA of MOAP1, but it was significant enough in reversing the H2O2 induced apoptosis in HEK293T cells. These results confirm that hcmv-miR-UL70-3p downregulates H2O2 induced apoptosis in HEK293T cells by targeting the 3'UTR of MOAP1 mRNA.

Entamoeba histolytica, a pathogenic parasite, is the causative organism of amoebiasis and uses human colon to complete its life cycle. It destroys intestinal tissue leading to invasive disease. Since it does not form cyst in culture medium, a reptilian parasite Entamoeba invadens serves as the model system to study encystation. Detailed investigation on the mechanism of cyst formation, information on ultra-structural changes and cyst wall formation during encystation are still lacking in E. invadens. Here, we used electron microscopy to study the ultrastructural changes during cyst formation and showed that the increase in heterochromatin patches and deformation of nuclear shape were early events in encystation. These changes peaked at ∼20 h post induction, and normal nuclear morphology was restored by 72 h. Two types of cellular structures were visible by 16 h. One was densely stained and consisted of the cytoplasmic mass with clearly visible nucleus. The other consisted of membranous shells with large vacuoles and scant cytoplasm. The former structure developed into the mature cyst while the latter structure was lost after 20 h, This study of ultra-structural changes during encystation in E. invadens opens up the possibilities for further investigation into the mechanisms involved in this novel process.

International audience; With the spread of drug resistance, new antimicrobials are urgently needed. Here, we set out to tackle this problem by high-throughput exploration for novel antifungal synergies among combinations of approved, nonantifungal drugs; a novel strategy exploiting the potential of alternative targets, low chemicals usage and low development risk. We screened the fungal pathogen Candida albicans by combining a small panel of nonantifungal drugs (all in current use for other clinical applications) with 1280 compounds from an approved drug library. Screens at sublethal concentrations of the antibiotic paromomycin (PM), the antimalarial primaquine (PQ), or the anti-inflammatory drug ibuprofen (IF) revealed a total of 17 potential strong, synergistic interactions with the library compounds. Susceptibility testing with the most promising combinations corroborated marked synergies [fractional inhibitory concentration (FIC) indices ≤0.5] between PM + β-escin, PQ + celecoxib, and IF + pentamidine, reducing the MICs of PM, PQ, and IF in C. albicans by >64-, 16-, and 8-fold, respectively. Paromomycin + β-escin and PQ + celecoxib were effective also against C. albicans biofilms, azole-resistant clinical isolates, and other fungal pathogens. Actions were specific, as no synergistic effect was observed in mammalian cells. Mode of action was investigated for one of the combinations, revealing that PM + β-escin synergistically increase the error-rate of mRNA translation and suggesting a different molecular target to current antifungals. The study unveils the potential of the described combinatorial strategy in enabling acceleration of drug-repurposing discovery for combatting fungal pathogens.

Entamoeba Histolytica, a pathogenic parasite, is the causative organism of amoebiasis and uses human colon to complete its life cycle. It destroys intestinal tissue leading to invasive disease. Since it does not form cyst in culture medium, a reptilian parasiteEntamoeba invadensserves as the model system to study encystation. Detailed investigation on the mechanism of cyst formation, information on ultra-structural changes and cyst wall formation during encystation are still lacking inE. invadens. Here, we used electron microscopy to study the ultrastructural changes during cyst formation and showed that the increase in heterochromatin patches and deformation of nuclear shape were early events in encystation. These changes peaked at ~20h post induction, and normal nuclear morphology was restored by 72h. Two types of cellular structures were visible by 16h. One was densely stained and consisted of the cytoplasmic mass with clearly visible nucleus. The other consisted of membranous shells with large vacuoles and scant cytoplasm. The former structure developed into the mature cyst while the latter structure was lost after 20h, This study of ultra-structural changes during encystation inE. invadensopens up the possibilities for further investigation into the mechanisms involved in this novel process.

Skin offers protection against external insults, with the skin microbiota playing a crucial defensive role against pathogens that gain access when the skin barrier is breached. Linkages between skin microbes, biofilms and disease have not been well established although single-species biofilm formation by skin microbiota in vitro has been extensively studied. Consequently, the purpose of this work was to optimize and validate a simple polymicrobial biofilm keratinocyte model for investigating commensal, pathogen and keratinocyte interactions and for evaluating therapeutic agents or health promoting interventions. The model incorporates the commensals (Staphylococcus epidermidis and Micrococcus luteus) and pathogens (Staphylococcus aureus and Pseudomonas aeruginosa) which form robust polymicrobial biofilms on immortalized keratinocytes (HaCat cells). We observed that the commensals reduce the damage caused to the keratinocyte monolayer by either pathogen. When the commensals were combined with P. aeruginosa and S. aureus, much thinner biofilms were observed than those formed by the pathogens alone. When P. aeruginosa was inoculated with S. epidermidis in the presence or absence of M. luteus, the commensals formed a layer between the keratinocytes and pathogen. Although S. aureus completely inhibited the growth of M. luteus in dual-species biofilms, inclusion of S. epidermidis in triple or quadruple species biofilms, enabled M. luteus to retain viability. Using this polymicrobial biofilm keratinocyte model, we demonstrate that a quorum sensing (QS) deficient S. aureus agr mutant, in contrast to the parent, failed to damage the keratinocyte monolayer unless supplied with the exogenous cognate autoinducing peptide. In addition, we show that treatment of the polymicrobial keratinocyte model with nanoparticles containing an inhibitor of the PQS QS system reduced biofilm thickness and P. aeruginosa localization in mono- and polymicrobial biofilms., This work was supported by the Unilever, the EMPIR program co-financed by the Participating States and the European Union (grant ref. 15HLT01 MetVBadBugs) and Medical Research Council, United Kingdom (grant no. MR/N010477/1). AK was funded via a Wellcome Trust Doctoral Training Program (Antimicrobials and Antimicrobial Resistance) (grant no. 108876/B/15/Z). NS was funded by the Engineering and Physical Sciences Research Council (EPSRC) (grant nos. EP/N006615/1, EP/K005138/1, and EP/N03371X/1).

The receptor for activated c-kinase (RACK1, Asc1 in yeast) is a eukaryotic ribosomal protein located in the head region of the 40S subunit near the mRNA exit channel. This WD-repeat β-propeller protein acts as a signaling molecule and is involved in metabolic regulation, cell cycle progression, and translational control. However, the exact details of the RACK1 recruitment and stable association with the 40S ribosomal subunit remain only partially known. X-ray analyses of the yeast, Saccharomyces cerevisiae, ribosome revealed that the RACK1 propeller blade (4-5) interacts with the eukaryote-specific C-terminal domain (CTD) of ribosomal protein S3 (uS3 family). To check the functional significance of this interaction, we generated mutant yeast strains harboring C-terminal deletions of uS3. We found that deletion of the 20 C-terminal residues (interacting with blade 4-5) from the uS3-CTD abrogates RACK1 binding to the ribosome. Strains with truncated uS3-CTD exhibited compromised cellular growth and protein synthesis similar to that of RACK1Δ strain, thus suggesting that the uS3-CTD is crucial not only for the recruitment and association of RACK1 with the ribosome, but also for its intracellular function. We suggest that eukaryote-specific RACK1-uS3 interaction has evolved to act as a link between the ribosome and the cellular signaling pathways.

Ubiquitination is the vital system for controlling protein degradation and regulation of basic cellular processes. Deubiquitinases (DUBs) are emerging as an important regulator of several pathways related to cancer and other diseases. Their ability to detach ubiquitin from the target substrate and regulation of signaling makes it potential target to treat cancer and other fatal diseases. In the current review, we are trying to summarize deubiquitination, and their role in cancer and potential small molecules DUBs inhibitors which can be used as drugs for cancer treatment.

ELG1 is a conserved gene with important roles in the maintenance of genome stability. Elg1's activity prevents gross chromosomal rearrangements, maintains proper telomere length regulation, helps repairing DNA damage created by a number of genotoxins and participates in sister chromatid cohesion. Elg1 is evolutionarily conserved, and its Fanconi Anemia-related mammalian ortholog (also known as ATAD5) is embryonic lethal when lost in mice and acts as a tumor suppressor in mice and humans. Elg1 encodes a protein that forms an RFC-like complex that unloads the replicative clamp, PCNA, from DNA, mainly in its SUMOylated form. We have identified 2 different regions in yeast Elg1 that undergo phosphorylation. Phosphorylation of one of them, S112, is dependent on the ATR yeast ortholog, Mec1, and probably is a direct target of this kinase. We show that phosphorylation of Elg1 is important for its role at telomeres. Mutants unable to undergo phosphorylation suppress the DNA damage sensitivity of Δrad5 mutants, defective for an error-free post-replicational bypass pathway. This indicates a role of phosphorylation in the regulation of DNA repair. Our results open the way to investigate the mechanisms by which the activity of Elg1 is regulated during DNA replication and in response to DNA damage.

The small ribosomal subunit protein uS9 (formerly called rpS16 in Saccharomyces cerevisiae), has a long protruding C-terminal tail (CTT) that extends towards the mRNA cleft of the ribosome. The last C-terminal residue of uS9 is an invariably conserved, positively charged Arg that is believed to enhance interaction of the negatively charged initiator tRNA with the ribosome when the tRNA is base-paired to the AUG codon in the P-site. In order to more fully characterize the role of the uS9 CTT in eukaryotic translation, we tested how truncations, extensions and substitutions within the CTT affect initiation and elongation processes in Saccharomyces cerevisiae. We found that uS9 C-terminal residues are critical for efficient recruitment of the eIF2•GTP•Met-tRNAiMet ternary complex to the ribosome and for its proper response to the presence of an AUG codon in the P-site during the scanning phase of initiation. These residues also regulate hydrolysis of the GTP in the eIF2•GTP•Met-tRNAiMet complex to GDP and Pi. In addition, our data show that uS9 CTT modulates elongation fidelity. Therefore, we propose that uS9 CTT is critical for proper control of the complex interplay of events surrounding accommodation of initiator and elongator tRNAs in the P- and A-sites of the ribosome.

Cypermethrin, a pyrethroid pesticide, has been shown to induce neurotoxicity in adult mammals. However, studies are also needed to explore its toxicity in developing brains and understand its mechanism of action in neurons. In our recently published study, using nerve growth factor (NGF) differentiated PC12 cells, we have identified the miR-200 family as major up-regulated miRNAs, which regulate differentiation of PC12 cells into neurons. In the present study, the toxicity of cypermethrin is compared between undifferentiated and neuron-like differentiated PC12 cells, and role of the miR-200 family is studied in cypermethrin-induced neuronal cell death. Our studies have shown that a non-cytotoxic concentration of cypermethrin selectively induces the miR-200 family and apoptosis in differentiated PC12 cells, while no significant alterations were observed in undifferentiated PC12 cells. Further, our studies have demonstrated that cypermethrin induces miR-200 by increasing P53 levels in differentiated PC12 cells and we have identified a direct correlation between the expression of miR-200 and levels of P53 in PC12 cells. Further, BCL2 is identified as a target protein of miR-200b/c, and down-regulation of the BCL2 protein regulates cypermethrin-induced apoptosis of differentiated PC12 cells. Rescue experiments carried out with inhibitors of the miR-200 family, have further confirmed the role of the miR-200 family in apoptosis of differentiated PC12 cells exposed to cypermethrin. In conclusion, our studies have shown that differentiated PC12 cells are more sensitive to cypermethrin exposure than naive and undifferentiated PC12 cells, and P53 mediated induction of the miR-200 family regulates cypermethrin-induced apoptosis of differentiated neuron-like PC12 cells.

A repeat breeder crossbred cow was presented to clinic and after treatment with this condition animal was come in heat with clear mucous than artificial insemination was done and animal become pregnant and regularly monitoring health of the animal than delevered twin female calf after artificial insemination.

Recent studies of inter-individual variation in behavior have focused primarily on its environmental causation and adaptive consequences, but commonly ignore questions regarding its proximate development. Here, we explore the effects of the late natal environment on the development of individual- and colony-level personalities in the acorn ant, Temnothorax longispinosus. This species is commonly parasitized by the slave-making ant Protomognathus americanus, and we predicted that rearing T. longispinosus with its brood parasite would alter the behavior of individual ants and the collective, colony-level personality of groups. Using a split-brood design (where brood from a single source colony is split equally across different rearing environments), we reared T. longispinosus in four conditions: their maternal queen, an unrelated conspecific queen, a slave-making queen, and a slave-making worker. Although individual aggressiveness and exploratory behavior did not differ between ants raised by their maternal queen or slave-making ants, ants raised by an unrelated conspecific queen showed increased aggressiveness 60 days after emergence. Further, groups of ants raised by slave-making workers were faster at locating new nest sites, a collective behavior, relative to groups reared by their maternal queen. Lastly, colonies containing T. longispinosus and their maternal queen had the greatest brood production at 60 days. Our results demonstrate that differences in individuals’ rearing environment can influence both individual- and colony-level personality in multi-level societies.

The presence or absence of social counterparts can be instrumental in shaping both individual and collective behaviors. Furthermore, factors of the social environment may safeguard individuals from environmental stressors. In the study reported here, we tested the effects of moving into a new habitat on the mean, variance, and repeatability of individual behavioral tendencies between two social contexts (isolated vs. in a social group). Using the arid social spider, Stegodyphus dumicola (Araneae: Eresidae), we tested whether individuals' boldness was influenced by either (i) their time spent in a social group or (ii) their latency since having moved into a new habitat. We found that the effect of moving into a new habitat on individuals' boldness depended on whether spiders entered the novel environment in isolation or as part of a social group. Spiders that experienced a habitat shift with a social group showed no change in their average boldness, whereas individuals that shifted environments in isolation showed an increase in their mean boldness. Interestingly, neither of these trends was influenced by the time which had elapsed since the habitat shift, suggesting that shifting habitats has a lasting effect on isolated spiders' behavioral tendencies. Finally, we assessed how time spent in a new environment influenced colonies' collective foraging behavior. Here, we found that the longer social groups remained in a new environment, the faster the group responded to prey. Taken together, our data demonstrate that the effects of shifting physical environments on individuals' boldness may depend on individuals' social context, and that group tenure is associated with subtle shifts in colonies' collective foraging behavior.

Precopulatory sexual cannibalism is an extreme form of sexual conflict that can entail significant costs to the cannibalized individual and a variety of costs and benefits to the cannibal itself. Characterizing these costs and benefits is fundamental to our understanding of how this behavior evolves. Using the spider Agelenopsis pennsylvanica, we tested the reproductive consequences of precopulatory sexual cannibalism by staging cannibalization events and comparing the performance of experimental cannibals against natural cannibals (i.e., those that cannibalized on their own) and non-cannibals. We found two performance benefits associated with precopulatory sexual cannibalism: first, experimental cannibals were more likely to produce egg cases than non-cannibals, and second, egg cases from experimental cannibals and natural cannibals were significantly more likely to hatch than those produced by non-cannibals. We then tested whether males were more likely to approach the webs of experimental cannibals vs. non-cannibalistic control females. Our data demonstrate that sexual cannibalism increases female attractiveness to males. Although this result seems counterintuitive, in fact, rates of precopulatory sexual cannibalism were much lower in females that had already cannibalized their first male: 38% of sexually naive females engaged in precopulatory sexual cannibalism, whereas only 5% of females engaged in cannibalism a second time. Thus, males that approach cannibals receive two benefits: they are less likely to be cannibalized precopula, and they have the possibility of mating with females that have a higher probability of producing viable egg cases. Taken together, our data suggest that precopulatory sexual cannibalism affords females numerous benefits and may have a hand in shaping male mate choice decisions.

The ribosomal RNA genes in Entamoeba spp. are located on extrachromosomal circular molecules. Unlike model organisms where rRNA transcription stops during growth stress, Entamoeba histolytica continues transcription; but unprocessed pre-rRNA accumulates during stress, along with a novel class of circular transcripts from the 5′-external transcribed spacer (ETS). To determine the fate of rRNA transcription during stage conversion between trophozoite to cyst we analyzed Entamoeba invadens, a model system for differentiation studies in Entamoeba. We characterized the complete rDNA transcription unit by mapping the ends of pre-rRNA and mature rRNAs. The 3′ end of mature 28S rRNA was located 321 nt downstream of the end predicted by sequence homology with E. histolytica. The major processing sites were mapped in external and internal transcribed spacers. The promoter located within 146 nt upstream of 5′ ETS was used to transcribe the pre-rRNA. On the other hand, a second promoter located at the 3′ end of 28S rDNA was used to transcribe almost the entire intergenic spacer into a long non coding (nc) RNA (>10 kb). Interestingly we found that the levels of pre-rRNA and long ncRNA, measured by northern hybridization, decreased initially in cells shifted to encystation medium, after which they began to increase and reached high levels by 72 h when mature cysts were formed. Unlike E. histolytica, no circular transcripts were found in E. invadens. E. histolytica and E. invadens express fundamentally different ncRNAs from the rDNA locus, which may reflect their adaptation to different hosts (human and reptiles, respectively). This is the first description of rDNA organization and transcription in E. invadens, and provides the framework for further studies on regulation of rRNA synthesis during cyst formation.

MicroRNAs (miRNAs) are generated by endonuclease activity of Dicer, which also helps in loading of miRNAs to their target sequences. SH-SY5Y, a human neuroblastoma and a cellular model of neurodevelopment, consistently expresses genes related to neurodegenerative disorders at different biological levels (DNA, RNA, and proteins). Using SH-SY5Y cells, we have studied the role of Dicer and miRNAs in neuronal differentiation and explored involvement of P53, a master regulator of gene expression in differentiation-induced induction of miRNAs. Knocking down Dicer gene induced senescence in differentiating SH-SY5Y cells, which indicate the essential role of Dicer in brain development. Differentiation of SH-SY5Y cells by retinoic acid (RA) or RA + brain-derived neurotrophic factor (BDNF) induced dramatic changes in global miRNA expression. Fully differentiated SH-SY5Y cells (5-day RA followed by 3-day BDNF) significantly (p 0.05 and atleast3-fold change) upregulated and downregulated the expression of 77 and 17 miRNAs, respectively. Maximum increase was observed in the expression of miR-193-5p, miR-199a-5p, miR-192, miR-145, miR-28-5p, miR-29b, and miR-222 after RA exposure and miR-193-5p, miR-146a, miR-21, miR-199a-5p, miR-153, miR-29b, and miR-222 after RA + BDNF exposure in SH-SY5Y cells. Exploring the role of P53 in differentiating SH-SY5Y cells, we have observed that induction of miR-222, miR-192, and miR-145 is P53 dependent and expression of miR-193a-5p, miR-199a-5p, miR-146a, miR-21, miR-153, and miR-29b is P53 independent. In conclusion, decreased Dicer level enforces differentiating cells to senescence, and differentiating SH-SY5Y cells needs increased expression of P53 to cope up with changes in protein levels of mature neurons.

Entamoeba invadens is used as a model system to study trophozoite to cyst differentiation since Entamoeba histolytica, the causative agent of amoebiasis cannot encyst in culture. However, a system for introduction of cloned genes in E. invadens is not available. Here we report an electroporation-based method for transfection of E. invadens tophozoites and demonstrate the expression of firefly luciferase reporter gene driven from the E. invadens ribosomal protein L3 promoter. The efficiency of luciferase expression driven from the promoters of three different E. invadens genes (rpl3, rps10 and h2b) was tested and found to correlate with the in vivo expression levels of the respective gene. This system will permit the analysis of regulatory elements required for gene expression in E. invadens.

This study was designed to understand the mechanism and functional implication of the two heterozygous mutations (H391Y and K422R) of human pyruvate kinase M2 isozyme (PKM(2)) observed earlier in a Bloom syndrome background. The co-expression of homotetrameric wild type and mutant PKM(2) in the cellular milieu resulting in the interaction between the two at the monomer level was substantiated further by in vitro experiments. The cross-monomer interaction significantly altered the oligomeric state of PKM(2) by favoring dimerization and heterotetramerization. In silico study provided an added support in showing that hetero-oligomerization was energetically favorable. The hetero-oligomeric populations of PKM(2) showed altered activity and affinity, and their expression resulted in an increased growth rate of Escherichia coli as well as mammalian cells, along with an increased rate of polyploidy. These features are known to be essential to tumor progression. This study provides insight in understanding the modulated role of large oligomeric multifunctional proteins such as PKM(2) by affecting cellular behavior, which is an essential observation to understand tumor sustenance and progression and to design therapeutic intervention in future.

Broadly biomarker word is defined as quantifiable indicator of disease conditions or physiological changes of living organisms. Biomarker field is very old, only few specific biochemical and molecular biomarkers are identified. Discovery of novel and specific biomarkers is still facing several challenges . Based on the methods of quantification, biomarkers can be classified in three types 1) Imaging biomarkers (like X-ray, ultra sound, CT scan, PET, MRI), 2) Biochemical biomarkers (transaminases, bilirubin, alkaline phosphatase, serum creatinine) and 3) Molecular biomarkers. Molecular biomarkers are defined as markers which are measured based on genomic and proteomic approaches. Molecular biomarkers are most recent development in biomarker field, which is still in early developmental stage and needs tremendous amount of research to identify the specific biomarkers which can help in detection of disease before onset of physio; pathological changes or symptoms.

Entamoeba histolyticainfections are endemic in the Indian subcontinent. Five to eight percent of urban population residing under poor sanitary conditions suffers fromEntamoebainfections. Metronidazole is the most widely prescribed drug used for amoebiasis. In order to understand the impact of metronidazole stress on the parasite, we evaluated the expression of two antioxidant enzymes, peroxiredoxin and FeSOD, inEntamoeba histolyticaisolates during metronidazole stress. The results reveal that, under metronidazole stress, the mRNA expression levels of these enzymes did not undergo any significant change. Interestingly, immunolocalization studies with antibodies targeting peroxiredoxin indicate differential localization of the protein in the cell during metronidazole stress. In normal conditions, all theEntamoebaisolates exhibit presence of peroxiredoxin in the nucleus as well as in the membrane; however with metronidazole stress the protein localized mostly to the membrane. The change in the localization pattern was more pronounced when the cells were subjected to short term metronidazole stress compared to cells adapted to metronidazole. The protein localization to the cell membrane could be the stress response mechanism in these isolates. Colocalization pattern of peroxiredoxin with CaBp1, a cytosolic protein, revealed that the membrane and nuclear localization was specific to peroxiredoxin during metronidazole stress.

Amoebiasis is spread by the ingestion of dormant Entamoeba histolytica cysts. Intervention of encystation could break the transmission cycle, thereby reducing disease burden. The model system used to study trophozoite to cyst differentiation is Entamoeba invadens . Here we describe an electroporation-based method for stable transfection of E. invadens with a plasmid p Ei NEO-LUC containing the neomycin phosphotransferase gene under the control of E. invadens ribosomal protein gene S10 promoter. The plasmid also contains luciferase reporter gene expressed from the promoter of ribosomal protein gene L3. After electroporation, cells receiving the plasmid were selected by growth in 10 μg ml −1 G418 and stable lines were obtained in four to five weeks. The plasmid was replicated episomally to ∼10 copies per haploid genome. In the absence of drug selection 50% of the plasmid copies were lost in 9–10 days. In cells growing under drug selection the reporter gene was continuously expressed throughout the differentiation process from trophozoite to cyst and back, making this system suitable for analysis of genes involved in differentiation.

The DNA dynamics which mediate conversion of uni-nucleate trophozoite into quadrinucleate cyst in Entamoeba histolytica is not well understood. Here, we have addressed this question in Entamoeba invadens (a model system for encystation) through a detailed time course study of the differentiation process. We combined flow cytometric analysis with the change in rate of thymidine incorporation and the number of nuclei per cell. Our data shows that during encystment the cell population passes through three phases: (1) Early phase (0–8 h); of rapid DNA synthesis which may correspond to completion of ongoing DNA replication. Bi-nucleated cells increase with concomitant drop in uni-nucleated cells. (2) Commitment phase (8–24 h); in which DNA synthesis rate slows down. Possibly new rounds of replication are initiated which proceed slowly, followed by mitosis at 20 h. After this the number of bi- and uni-nucleated cells gradually decline and the tri- and tetra-nucleated cells begin to increase. (3) Consolidation phase (24–72 h); in which the rate of DNA synthesis shows a small increase till 32 h and then begins to decline. The G2/M peak reappears at 48 h, showing that more rounds of DNA replication may be getting completed, followed by nuclear division. By 72 h the encystment is virtually complete. The bi-nucleated stage could be an intermediate both in the conversion of trophozoite to cyst and back. Our study provides a comprehensive view of DNA dynamics during encystation and excystation of E. invadens .

The present work aims to simulate and predict the molecular pathway of Parkinson’s disease (PD) initiated by environmental stress. It is designed to predict how protein aggregation and Lewy body (LB) formation leads to dopamine toxicity finally leading to cell death. The Mechanistic electronic modeling using Digital-Analog hybrid technique has been designed and implemented using MULTISIM 8.0 (National Instruments, USA) to simulate and predict the dynamics of PD pathway under environmental stress condition. The electronic network is initiated through an analog comparator circuit that compares the long-term environmental alterations with the cellular set point level of the molecular kinetics. The pattern of neuronal firing is simulated with the help of analog electronic circuit. The simulation results show a slow progressive rise in [Formula: see text]-synuclein/LB/dopamine toxicity level within the neuronal cells, which is comparable to published experimental and modeling studies associated with PD. Finally, cell death is demonstrated, which leads to neurodegeneration. In conclusion, our model allows a straightforward implementation of qualitative representation for systems where the network topology or pathway is at least moderately known.

Homologous recombination (HR) has not been demonstrated in the parasitic protists Entamoeba histolytica or Entamoeba invadens, as no convenient method is available to measure it. However, HR must exist to ensure genome integrity, and possible genetic exchange, especially during stage conversion from trophozoite to cyst. Here we show the up regulation of mitotic and meiotic HR genes in Entamoeba during serum starvation, and encystation. To directly demonstrate HR we use a simple PCR-based method involving inverted repeats, which gives a reliable read out, as the recombination junctions can be determined by sequencing the amplicons. Using this read out, we demonstrate enhanced HR under growth stress in E. histolytica, and during encystation in E. invadens. We also demonstrate recombination between chromosomal inverted repeats. This is the first experimental demonstration of HR in Entamoeba and will help future investigations into this process, and to explore the possibility of meiosis in Entamoeba.