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Of the four separate PE biosynthetic pathways in eukaryotes, one occurs in the mitochondrial inner membrane (IM) and is executed by phosphatidylserine decarboxylase (Psd1). Deletion of Psd1 is lethal in mice and compromises mitochondrial function. We hypothesize that this reflects inefficient import of non-mitochondrial PE into the IM. Here, we test this by re-wiring PE metabolism in yeast by re-directing Psd1 to the outer mitochondrial membrane or the endomembrane system and show that PE can cross the IMS in both directions. Nonetheless, PE synthesis in the IM is critical for cytochrome bc1 complex (III) function and mutations predicted to disrupt a conserved PE-binding site in the complex III subunit, Qcr7, impair complex III activity similar to PSD1 deletion. Collectively, these data challenge the current dogma of PE trafficking and demonstrate that PE made in the IM by Psd1 support the intrinsic functionality of complex III. Phosphatidylethanolamine (PE) is synthesized by four separate pathways, although surprisingly, perturbing mitochondrial PE synthesis compromises mitochondrial function. Here, the authors show that mitochondrial PE synthesis is required for Complex III function and challenge PE trafficking dogma.

Within cellular structures, compartmentalization is the concept of spatial segregation of macromolecules, metabolites, and biochemical pathways. Therefore, this concept bridges organellar structure and function. Mitochondria are morphologically complex, partitioned into several subcompartments by a topologically elaborate two-membrane system. They are also dynamically polymorphic, undergoing morphogenesis events with an extent and frequency that is only now being appreciated. Thus, mitochondrial compartmentalization is something that must be considered both spatially and temporally. Here, we review new developments in how mitochondrial structure is established and regulated, the factors that underpin the distribution of lipids and proteins, and how they spatially demarcate locations of myriad mitochondrial processes. Consistent with its pre-eminence, disturbed mitochondrial compartmentalization contributes to the dysfunction associated with heritable and aging-related diseases.

Cardiolipin mediates dynamic receptor-channel interactions within the mitochondrial TIM23 protein import complex., The phospholipid cardiolipin mediates the functional interactions of proteins that reside within energy-conserving biological membranes. However, the molecular basis by which this lipid performs this essential cellular role is not well understood. We address this role of cardiolipin using the multisubunit mitochondrial TIM23 protein transport complex as a model system. The early stages of protein import by this complex require specific interactions between the polypeptide substrate receptor, Tim50, and the membrane-bound channel-forming subunit, Tim23. Using analyses performed in vivo, in isolated mitochondria, and in reductionist nanoscale model membrane systems, we show that the soluble receptor domain of Tim50 interacts with membranes and with specific sites on the Tim23 channel in a manner that is directly modulated by cardiolipin. To obtain structural insights into the nature of these interactions, we obtained the first small-angle x-ray scattering-based structure of the soluble Tim50 receptor in its entirety. Using these structural insights, molecular dynamics simulations combined with a range of biophysical measurements confirmed the role of cardiolipin in driving the association of the Tim50 receptor with lipid bilayers with concomitant structural changes, highlighting the role of key structural elements in mediating this interaction. Together, these results show that cardiolipin is required to mediate specific receptor-channel associations in the TIM23 complex. Our results support a new working model for the dynamic structural changes that occur within the complex during transport. More broadly, this work strongly advances our understanding of how cardiolipin mediates interactions among membrane-associated proteins.

Massive Ca(2+) influx into mitochondria is critically involved in cell death induction but it is unknown how this activates the organelle for cell destruction. Using multiple approaches including subcellular fractionation, FRET in intact cells, and in vitro reconstitutions, we show that mitochondrial Ca(2+) influx prompts complex II of the respiratory chain to disintegrate, thereby releasing an enzymatically competent sub-complex that generates excessive reactive oxygen species (ROS) for cell death induction. This Ca(2+)-dependent dissociation of complex II is also observed in model membrane systems, but not when cardiolipin is replaced with a lipid devoid of Ca(2+) binding. Cardiolipin is known to associate with complex II and upon Ca(2+) binding coalesces into separate homotypic clusters. When complex II is deprived of this lipid, it disintegrates for ROS formation and cell death. Our results reveal Ca(2+) binding to cardiolipin for complex II disintegration as a pivotal step for oxidative stress and cell death induction.

After biosynthesis, an evolutionarily conserved acyl chain remodeling process generates a final highly homogeneous and yet tissue-specific molecular form of the mitochondrial lipid cardiolipin. Hence, cardiolipin molecules in different organisms, and even different tissues within the same organism, contain a distinct collection of attached acyl chains. This observation is the basis for the widely accepted paradigm that the acyl chain composition of cardiolipin is matched to the unique mitochondrial demands of a tissue. For this hypothesis to be correct, cardiolipin molecules with different acyl chain compositions should have distinct functional capacities, and cardiolipin that has been remodeled should promote cardiolipin-dependent mitochondrial processes better than its unremodeled form. However, functional disparities between different molecular forms of cardiolipin have never been established. Here, we interrogate this simple but crucial prediction utilizing the best available model to do so, Saccharomyces cerevisiae. Specifically, we compare the ability of unremodeled and remodeled cardiolipin, which differ markedly in their acyl chain composition, to support mitochondrial activities known to require cardiolipin. Surprisingly, defined changes in the acyl chain composition of cardiolipin do not alter either mitochondrial morphology or oxidative phosphorylation. Importantly, preventing cardiolipin remodeling initiation in yeast lacking TAZ1, an ortholog of the causative gene in Barth syndrome, ameliorates mitochondrial dysfunction. Thus, our data do not support the prevailing hypothesis that unremodeled cardiolipin is functionally distinct from remodeled cardiolipin, at least for the functions examined, suggesting alternative physiological roles for this conserved pathway.

Respiratory Complex II of the mitochondrial inner membrane serves as a link between the tricarboxylic acid cycle and the electron transport chain. Complex II dysfunction has been implicated in a wide range of heritable mitochondrial diseases, including cancer, by a mechanism that likely involves the production of reactive oxygen species (ROS). Using Complex II enzymes reconstituted into nanoscale lipid bilayers (nanodiscs) with varying lipid composition, we demonstrate for the first time that the phospholipid environment, specifically the presence of cardiolipin, is critical for the assembly and enzymatic activity of the complex, as well as in the curtailment of ROS production.

Reversible protein phosphorylation is vital for many fundamental cellular processes. The actual impact of adding and removing phosphate group(s) is 3-fold: changes in the local/global geometry, alterations in the electrostatic potential and, as the result of both, modified protein-target interactions. Here we present a comprehensive structural investigation of the effects of phosphorylation on the conformational as well as functional states of a crucial cell surface receptor, αIIbβ3 integrin. We have analyzed phosphorylated (Tyr747 and Tyr759) β3 integrin cytoplasmic tail (CT) primarily by NMR, and our data demonstrate that under both aqueous and membrane-mimetic conditions, phosphorylation causes substantial conformational rearrangements. These changes originate from novel ionic interactions and revised phospholipid binding. Under aqueous conditions, the critical Tyr747 phosphorylation prevents β3CT from binding to its heterodimer partner αIIbCT, thus likely maintaining an activated state of the receptor. This conclusion was tested in vivo and confirmed by integrin-dependent endothelial cells adhesion assay. Under membrane-mimetic conditions, phosphorylation results in a modified membrane embedding characterized by significant changes in the secondary structure pattern and the overall fold of β3CT. Collectively these data provide unique molecular insights into multiple regulatory roles of phosphorylation.

Over 4000 putative proteorhodopsins (PRs) have been identified throughout the oceans and seas of the Earth. The first of these eubacterial rhodopsins was discovered in 2000 and has expanded the family of microbial proton pumps to all three domains of life. With photophysical properties similar to those of bacteriorhodopsin, an archaeal proton pump, PRs are also generating interest for their potential use in various photonic applications. We perform here the first reconstitution of the minimal photoactive PR structure into nanoscale phospholipid bilayers (nanodiscs) to better understand how protein-protein and protein-lipid interactions influence the photophysical properties of PR. Spectral (steady-state and time-resolved UV-visible spectroscopy) and physical (size-exclusion chromatography and electron microscopy) characterization of these complexes confirms the preparation of a photoactive PR monomer within nanodiscs. Specifically, when embedded within a nanodisc, monomeric PR exhibits a titratable pK(a) (6.5-7.1) and photocycle lifetime (∼100-200 ms) that are comparable to the detergent-solubilized protein. These ndPRs also produce a photoactive blue-shifted absorbance, centered at 377 or 416 nm, that indicates that protein-protein interactions from a PR oligomer are required for a fast photocycle. Moreover, we demonstrate how these model membrane systems allow modulation of the PR photocycle by variation of the discoidal diameter (i.e., 10 or 12 nm), bilayer thickness (i.e., 23 or 26.5 Å), and degree of saturation of the lipid acyl chain. Nanodiscs also offer a highly stable environment of relevance to potential device applications.

Tim23p is an essential channel-forming component of the multisubunit TIM23 complex of the mitochondrial inner membrane that mediates protein import. Radiolabeled Tim23p monocysteine mutants were imported in vitro, incorporated into functional TIM23 complexes, and subjected to chemical cross-linking. Three regions of proximity between Tim23p and other subunits of the TIM23 complex were identified: Tim17p and the first transmembrane segment of Tim23p; Tim50p and the C-terminal end of the Tim23p hydrophilic region; and the entire hydrophilic domains of Tim23p molecules. These regions of proximity reversibly change in response to changes in membrane potential across the inner membrane and also when a translocating substrate is trapped in the TIM23 complex. These structural changes reveal that the macromolecular arrangement within the TIM23 complex is dynamic and varies with the physiological state of the mitochondrion.

The import of polytopic membrane proteins into the mitochondrial inner membrane (IM) is facilitated by Tim9p/Tim10p and Tim8p/Tim13p protein complexes in the intermembrane space (IMS). These complexes are proposed to act as chaperones by transporting the hydrophobic IM proteins through the aqueous IMS and preventing their aggregation. To examine the nature of this interaction, Tim23p molecules containing a single photoreactive cross-linking probe were imported into mitochondria in the absence of an IM potential where they associated with small Tim complexes in the IMS. On photolysis and immunoprecipitation, a probe located at a particular Tim23p site (27 different locations were examined) was found to react covalently with, in most cases, only one of the small Tim proteins. Tim8p, Tim9p, Tim10p, and Tim13p were therefore positioned adjacent to specific sites in the Tim23p substrate before its integration into the IM. This specificity of binding to Tim23p strongly suggests that small Tim proteins do not function solely as general chaperones by minimizing the exposure of nonpolar Tim23p surfaces to the aqueous medium, but may also align a folded Tim23p substrate in the proper orientation for delivery and integration into the IM at the TIM22 translocon.

Cardiolipin (CL) is the signature phospholipid of the mitochondrial inner membrane, which houses respiratory complexes that generate electrochemical ion gradients to drive processes such as ATP synthesis by oxidative phosphorylation. Nascent CL, which is enriched in saturated acyl chains of variable lengths, is subject to a two-stage remodeling process: a deacylase first removes an acyl chain to generate the monolysocardiolpin (MLCL) intermediate, and the transacylase tafazzin regenerates the four-chain lipid with highly unsaturated acyl chains with a high degree of symmetry. Mutations in the TAZ gene that encodes tafazzin underpin Barth syndrome, a multi-system mitochondrial disorder characterized by gross abnormalities in lipid profiles, cardiac and skeletal myopathy, neutropenia, growth retardation and mortality in early childhood. First, we analyze the role of CL in activating OXPHOS complexes using nanoscale lipid bilayers containing headgroup and acyl chain variants of CL. To this end, purified cytochrome c oxidase was reconstituted into nanodiscs of defined lipid composition and assayed for CL-dependent redox activity. Second, we have analyzed the binding characteristics of cytochrome c to bilayers containing CL variants. This work revealed that MLCL, which lacks a lipid tail, does not allow for the hydrophobic interactions and unfolding of cytochrome c, a requisite step in promoting peroxidase activity and of the apoptotic program. Finally, we use a combination of electrokinetic measurements and fluorescence-based approaches to address the ionization properties of the phosphate esters among CL variants. In contrast to the dominant paradigm in which a resonance-stabilized bicyclic headgroup structure promotes two disparate pKa values, we find the CL head group behaves as a strong dibasic acid, and exists as a dianion at physiological pH. Moreover, the ionization properties of the CL head group are similar for all variants examined.

Among the pathways for protein translocation across biological membranes, the ΔpH-dependent/Tat system is unusual in its sole reliance upon the transmembrane pH gradient to drive protein transport. The free energy cost of protein translocation via the chloro-plast ΔpH-dependent/Tat pathway was measured by conducting in vitro transport assays with isolated thylakoids while concurrently monitoring energetic parameters. These experiments revealed a substrate-specific energetic barrier to cpTat-mediated transport as well as direct utilization of protons from the gradient, consistent with a H + /protein antiporter mechanism. The magnitude of proton flux was assayed by four independent approaches and averaged 7.9 × 10 4 protons released from the gradient per transported protein. This corresponds to a ΔG transport of 6.9 × 10 5 kJ·mol protein translocated −1 , representing the utilization of an energetic equivalent of 10 4 molecules of ATP. At this cost, we estimate that the ΔpH-dependent/cpTat pathway utilizes approximately 3% of the total energy output of the chloroplast.

Cardiolipin is a unique lipid molecule, which has an unusual dimeric structure with a dual-phosphate headgroup and four acyl chains. In most eukaryotic membranes cardiolipin is absent or present only at very low concentrations, however in the inner mitochondrial membrane (IMM) cardiolipin constitutes approximately 10-20% the lipid composition. Cardiolipin is believed to play a role the organization and morphology of the IMM, which contains highly curved membrane regions called cristae that protrude into the matrix. Cardiolipin is also involved in cellular respiration and apoptosis, and has been shown to bind preferentially to several mitochondrial integral and peripheral proteins. During its biosynthesis in the IMM, cardiolipin undergoes a remodeling process whereby acyl chains are removed and replaced to produce mature cardiolipin species with highly unsaturated and uniform lipid tail composition. In the mitochondrial disorder Barth syndrome, defects in the remodeling machinery lead to accumulation of the three-tailed cardiolipin variant monolysocardiolipin. The phenotype of Barth syndrome cells includes abnormal mitochondrial morphology and inhibited energy metabolism. In this work we explore the relationship between the spatial distribution of lipid species and membrane curvature in cardiolipin containing heterogeneous membranes using molecular dynamics simulations. We investigate cardiolipin-containing bilayer properties both in flat lamellar environments and in highly curved (buckled) membranes, and demonstrate that clustering of cardiolipin occurs in areas of high negative curvature. We compare this clustering behavior as well as the pressure induced buckling susceptibility and other biophysical membrane properties in several bilayer systems. One goal of this study is to elucidate the effect of an accumulation of monolysocardiolipin on the physical properties of lipid bilayers.

Szeto-Schiller (SS) peptides are synthetic tetrapeptides containing an alternating aromatic-cationic motif. They are readily taken up by cells and are targeted to the mitochondrial inner membrane. Among them, SS-31 has been shown to bind to bilayers in a cardiolipin-dependent manner via electrostatic and hydrophobic interactions. As a therapeutic agent, SS-31 leads to clinical improvements in many complex diseases, likely linked to its selective interaction with the cardiolipin-rich inner membrane, protection of mitochondrial ultrastructure, curtailment of ROS, and restoration of oxidative phosphorylation. SS-31 represents a first-in-class cardiolipin-protective therapeutic; however, its molecular mechanism of action remains largely unknown. In this study we have explored the use of SS-31 as a potential therapeutic for Barth syndrome (BTHS), a multisystem disorder characterized by cardiac and skeletal myopathy, neutropenia, growth retardation, and premature death in young males. BTHS is caused by mutations in the gene that encodes the transacylase tafazzin, involved in acyl chain remodeling of cardiolipin following its biosynthesis. Dysfunctional tafazzin results in decreased levels of cardiolipin with abnormal fatty acid tail profiles, and an accumulation of the remodeling intermediate monolysocardiolipin. Using model membrane systems and in organello studies, we show that the binding affinities of SS-31 to bilayers containing cardiolipin and monolysocardiolipin are similar. Moreover, the presence of SS-31 appears to modulate the interaction of the electron carrier cytochrome c with bilayers containing cardiolipin and its variants. Our results suggest that SS-31 may act in part by altering membrane phase behavior. Our empirical results are complemented by computational approaches that address the nature of the SS-31 bilayer interaction. Our results point to the potential use of SS peptides as therapeutics for BTHS and give key mechanistic insights into the nature of their bilayer interactions.

Acetaminophen (APAP) overdose is a frequent cause of drug-induced liver injury and the most frequent cause of acute liver failure in the Western world. Previous studies with mouse models have revealed that impairment of mitochondrial respiration is an early event in the pathogenesis, but the exact mechanisms have remained unclear, and therapeutic approaches to specifically target mitochondria have been insufficiently explored. Here, we found that the reactive oxidative metabolite of APAP, N-acetyl-p-benzoquinoneimine (NAPQI), caused the selective inhibition of mitochondrial complex II activity by >90% in both mouse hepatic mitochondria and yeast-derived complexes reconstituted into nanoscale model membranes, as well as the decrease of succinate-driven adenosine triphosphate (ATP) biosynthesis rates. Based on these findings, we hypothesized that methylene blue (MB), a mitochondria-permeant redox-active compound that can act as an alternative electron carrier, protects against APAP-induced hepatocyte injury. We found that MB (

Background The reconstitution of membrane proteins and complexes into nanoscale lipid bilayer structures has contributed significantly to biochemical and biophysical analyses. Current methods for performing such reconstitutions entail an initial detergent-mediated step to solubilize and isolate membrane proteins. Exposure to detergents, however, can destabilize many membrane proteins and result in a loss of function. Amphipathic copolymers have recently been used to stabilize membrane proteins and complexes following suitable detergent extraction. However, the ability of these copolymers to extract proteins directly from native lipid bilayers for subsequent reconstitution and characterization has not been explored. Results The styrene-maleic acid (SMA) copolymer effectively solubilized membranes of isolated mitochondria and extracted protein complexes. Membrane complexes were reconstituted into polymer-bound nanoscale discs along with endogenous lipids. Using respiratory Complex IV as a model, these particles were shown to maintain the enzymatic activity of multicomponent electron transporting complexes. Conclusions We report a novel process for reconstituting fully operational protein complexes directly from cellular membranes into nanoscale lipid bilayers using the SMA copolymer. This facile, single-step strategy obviates the requirement for detergents and yields membrane complexes suitable for structural and functional studies.

Isoniazid (INH) is an antituberculosis drug that has been associated with idiosyncratic liver injury in susceptible patients. The underlying mechanisms are still unclear, but there is growing evidence that INH and/or its major metabolite, hydrazine, may interfere with mitochondrial function. However, hepatic mitochondria have a large reserve capacity, and minor disruption of energy homeostasis does not necessarily induce cell death. We explored whether pharmacologic or genetic impairment of mitochondrial complex I may amplify mitochondrial dysfunction and precipitate INH-induced hepatocellular injury. We found that INH (≤ 3000 μM) did not induce cell injury in cultured mouse hepatocytes, although it decreased hepatocellular respiration and ATP levels in a concentration-dependent fashion. However, coexposure of hepatocytes to INH and nontoxic concentrations of the complex I inhibitors rotenone (3 μM) or piericidin A (30 nM) resulted in massive ATP depletion and cell death. Although both rotenone and piericidin A increased MitoSox-reactive fluorescence, Mito-TEMPO or N-acetylcysteine did not attenuate the extent of cytotoxicity. However, preincubation of cells with the acylamidase inhibitor bis-p-nitrophenol phosphate provided protection from hepatocyte injury induced by rotenone/INH (but not rotenone/hydrazine), suggesting that hydrazine was the cell-damaging species. Indeed, we found that hydrazine directly inhibited the activity of solubilized complex II. Hepatocytes isolated from mutant Ndufs4(+/-) mice, although featuring moderately lower protein expression levels of this complex I subunit in liver mitochondria, exhibited unchanged hepatic complex I activity and were therefore not sensitized to INH. These data indicate that underlying inhibition of complex I, which alone is not acutely toxic, can trigger INH-induced hepatocellular injury.

Tim23, the central subunit of the TIM23 protein-translocation complex, forms a voltage-gated channel in the mitochondrial inner membrane (MIM), an energy-conserving membrane that generates a proton-motive force to drive vital processes. Using high-resolution fluorescence mapping of a channel-facing transmembrane segment (TMS2) of Tim23 from Saccharomyces cerevisiae, we demonstrate that changes in the energized state of the MIM cause marked structural alterations in the channel region. In an energized membrane, TMS2 forms a continuous α-helix that is inaccessible to the aqueous intermembrane space (IMS). Upon depolarization, the helical periodicity of TMS2 is disrupted, and the channel becomes exposed to the IMS. Kinetic measurements confirm that changes in TMS2 conformation coincide with depolarization. These results reveal how the energized state of the membrane drives functionally relevant structural dynamics in membrane proteins coupled to processes such as channel gating.

The TIM23 complex of the mitochondrial inner membrane mediates the translocation and integration of nuclear-encoded polypeptides that are targeted to the mitochondrion. Using a host of in organello and model membrane systems, we have analyzed the conformational alterations of key TIM23 subunits and site-specific interactions that occur between subunits during different steps of the transport process. First, using a fluorescence mapping strategy, we have analyzed the structural dynamics of the central voltage-gated channel-forming subunit, Tim23. We show dramatic alterations in the conformation of Tim23 transmembrane segments of the channel region that occur in a manner coupled to the magnitude of the proton-motive force across the inner membrane. Second, using a series of model membrane systems and reductionist approaches, we have analyzed site-specific interactions that occur between the Tim23 channel and the central receptor Tim50. Using Tim23 reconstituted into nanodiscs of different lipid composition, we identify the Tim50-interactive regions within the soluble and channel domains of Tim23. We find a critical role for cardiolipin, the signature anionic phospholipid of the mitochondrion, in promoting Tim23-Tim50 interactions. Using a combination of biochemical, mass spectrometry, and molecular dynamics approaches, we identify sites of the Tim50 receptor that bind to cardiolipin-containing lipid bilayers. The headgroup and acyl chain regions of cardiolipin that are critical in mediating Tim50 binding have been addressed using mitochondria from yeast strains defective in different steps of cardiolipin remodeling as well as model membranes of different lipid composition. Finally, we use small angle x-ray scattering (SAXS) to generate ab initio models of the Tim50 receptor domain and its lipid-interactive surface. These results illuminate the early receptor-mediated stages of protein translocation by the TIM23 complex and on the role of cardiolipin in promoting subunit interactions within the translocon.

The ADP/ATP Carrier (AAC) is the most abundant transporter of the mitochondrial inner membrane. The central role that this transporter plays in cellular energy production highlights the importance of understanding its structure, function, and the basis of its pathologies. As a means of preparing proteoliposomes for the study of membrane proteins, several groups have explored the use of cell-free translation systems to facilitate membrane protein integration directly into preformed unilamellar vesicles without the use of surfactants. Using AAC as a model, we report for the first time the detergent-free reconstitution of a mitochondrial inner membrane protein into liposomes using a wheat germ-based in vitro translation system. Using a host of independent approaches, we demonstrate the efficient integration of AAC into vesicles with an inner membrane-mimetic lipid composition and, more importantly, that the integrated AAC is functionally active in transport. By adding liposomes at different stages of the translation reaction, we show that this direct integration is obligatorily cotranslational, and by synthesizing stable ribosome-bound nascent chain intermediates, we show that the nascent AAC polypeptide interacts with lipid vesicles while ribosome-bound. Finally, we show that the presence of the phospholipid cardiolipin in the liposomes specifically enhances AAC translation rate as well as the efficiency of vesicle association and integration. In light of these results, the possible mechanisms of liposome-assisted membrane protein integration during cell-free translation are discussed with respect to the mode of integration and the role of specific lipids.

The TIM23 Complex of the mitochondrial inner membrane (IM) is a multi-component assembly that mediates the translocation of matrix-targeted precursor proteins as well as the integration of membrane proteins. This complex is energetically coupled to both an ATPase motor and the electrochemical proton potential across the IM. The central subunit of this complex, Tim23, forms a voltage-gated channel and contains a large soluble domain in the intermembrane space that functions as a substrate receptor. To analyze the structural dynamics that are attendant with changes in the energized state of the membrane, we employed a high-resolution fluorescence mapping approach in which small extrinsic probes were cotranslationally incorporated into specific sites of Tim23 from Saccharomyces cerevisiae and analyzed in active mitochondria by steady-state and time-resolved measurements under different physiologically relevant states. Analysis of the channel-facing transmembrane segment (TMS2) of Tim23 revealed that changes in the energized status of the inner membrane caused dramatic structural alterations in the channel region. In an energized membrane, TMS2 formed a continuous α-helix that was inaccessible to the aqueous intermembrane space. Upon depolarization, the helical periodicity of TMS2 was disrupted and the channel became exposed to the IMS. Real time kinetic measurements confirmed that changes in TMS2 conformation coincided with depolarization. This analysis is extended to the soluble receptor domain of Tim23, where we show proton-motive force-coupled structural changes and key protein interactions that are mediated by specific lipids within the inner membrane. These results reveal how the energized state of the membrane drives functionally relevant structural dynamics in membrane proteins that are coupled to processes such as channel gating.

Cardiolipin is an anionic phospholipid with a unique dimeric structure containing four fatty acids and two phosphate diesters. Within eukaryotic cells, cardiolipin resides predominantly in the energy-transducing mitochondrial inner membrane, where it mediates the assembly of respiratory chain supercomplexes, establishment of cristae morphology, and maintenance of membrane potential. Following its de novo synthesis in the inner membrane, nascent cardiolipin undergoes remodeling to produce a mature form of the lipid with largely unsaturated acyl chains. Abrogation of this remodeling cycle by dysfunction in the transacylase enzyme tafazzin underpins the heritable mitochondrial disorder Barth syndrome. Using an epistasis panel of yeast knockouts in the cardiolipin remodeling pathway, we have shown that remodeled and unremodeled cardiolpin support measurable features of oxidative phosphorylation to a similar extent, despite having marked differences in their acyl chain compositions. This has led us to analyze how physiochemical features other than acyl chain identity - namely the headgroup structure or the absence of a lipid tail - might explain the importance of cardiolipin remodeling. Using respiratory complex IV (cytochrome c oxidase) reconstituted into soluble nanoscale bilayers (nanodiscs) of defined lipid composition, we demonstrate the requirement of cardiolipin in activating respiratory complex redox activity. Moreover, performing fluorescence-based and electrokinetic measurements with model membrane systems, we have analyzed the interaction between divalent cations and cardiolipin-containing bilayers, as well as the proton dissociation behavior of cardiolipin variants. Using modeling that combines Gouy-Chapman-Stern formalism with Langmuir adsorption isotherms, our data indicate that cardiolipin variants bind divalent cations with similar affinities, but differ greatly with respect to cation-dependent alterations in headgroup packing in the bilayer interface. Moreover, our zeta potential measurements challenge the prevailing model that a bicyclic, resonance-stabilized headgroup structure maintains disparate pKa values of the two phosphate groups.

SummaryProtein translocation across the mitochondrial inner membrane is mediated by the TIM23 complex. While its central component, Tim23, is believed to form a protein-conducting channel, the regions of this subunit that face the imported protein are unknown. To examine Tim23 structure and environment in intact membranes at high resolution, various derivatives, each with a single, environment-sensitive fluorescent probe positioned at a specific site, were assembled into functional TIM23 complexes in active mitochondria and analyzed by multiple spectral techniques. Probes placed sequentially throughout a transmembrane region that was identified by crosslinking as part of the protein-conducting channel revealed an α helix in an amphipathic environment. Probes on the aqueous-facing helical surface specifically underwent spectral changes during protein import, and their accessibility to hydrophilic quenching agents is considered in terms of channel gating. This approach has therefore provided an unprecedented view of a translocon channel structure in an intact, fully operational, membrane-embedded complex.