1. Patch-seq of mouse DRG neurons reveals candidate genes for specific mechanosensory functions
- Author
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Thibaud Parpaite, Yasmine Mechioukhi, Nina Séjourné, Patrick Delmas, Bertrand Coste, Lucie Brosse, Amandine Laur, Laboratoire de Neurosciences Cognitives [Marseille] (LNC), Centre National de la Recherche Scientifique (CNRS)-Aix Marseille Université (AMU), and Aix Marseille Université (AMU)-Centre National de la Recherche Scientifique (CNRS)
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Male ,Candidate gene ,Patch-Clamp Techniques ,sensory neuron ,[SDV.NEU.NB]Life Sciences [q-bio]/Neurons and Cognition [q-bio.NC]/Neurobiology ,[SDV]Life Sciences [q-bio] ,Somatosensory system ,Mechanotransduction, Cellular ,Ion Channels ,Membrane Potentials ,Transcriptome ,Mice ,0302 clinical medicine ,Dorsal root ganglion ,Ganglia, Spinal ,Gene expression ,pain ,RNA-Seq ,nociception ,Biology (General) ,Mechanotransduction ,ComputingMilieux_MISCELLANEOUS ,Neurons ,0303 health sciences ,medicine.anatomical_structure ,Mechanosensitive channels ,Single-Cell Analysis ,somatosensation ,dorsal root ganglion ,QH301-705.5 ,In silico ,Sensory system ,Biology ,Article ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,medicine ,Animals ,Humans ,mechanotransduction ,030304 developmental biology ,Gene Expression Profiling ,Membrane Proteins ,RNA ,Sensory neuron ,Mice, Inbred C57BL ,HEK293 Cells ,Gene Expression Regulation ,ion channel ,NIH 3T3 Cells ,Neuron ,Neuroscience ,030217 neurology & neurosurgery - Abstract
Summary A variety of mechanosensory neurons are involved in touch, proprioception, and pain. Many molecular components of the mechanotransduction machinery subserving these sensory modalities remain to be discovered. Here, we combine recordings of mechanosensitive (MS) currents in mechanosensory neurons with single-cell RNA sequencing. Transcriptional profiles are mapped onto previously identified sensory neuron types to identify cell-type correlates between datasets. Correlation of current signatures with single-cell transcriptomes provides a one-to-one correspondence between mechanoelectric properties and transcriptomically defined neuronal populations. Moreover, a gene-expression differential comparison provides a set of candidate genes for mechanotransduction complexes. Piezo2 is expectedly found to be enriched in rapidly adapting MS current-expressing neurons, whereas Tmem120a and Tmem150c, thought to mediate slow-type MS currents, are uniformly expressed in all mechanosensory neuron subtypes. Further knockdown experiments disqualify them as mediating MS currents in sensory neurons. This dataset constitutes an open resource to explore further the cell-type-specific determinants of mechanosensory properties., Graphical abstract, Highlights • Patch-seq is performed on mechanically characterized DRG sensory neurons • Transcriptomically defined neuronal classes and current subtypes are correlated • Datasets of specific transcripts of current subtype-expressing neurons are generated • TACAN (Tmem120a) and Tentonin-3 (Tmem150c) do not contribute to DRG mechano-currents, Mechanosensation is the least understood sensory modality at the molecular level. Parpaite et al. combine single-cell RNA sequencing with mechanosensitive current recordings in cultured sensory neurons. One-to-one correspondence between mechanoelectric properties and single-cell transcriptomes provides a valuable resource for the identification of molecular factors involved in mechanosensation.
- Published
- 2021
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