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Insufficient knowledge about ecology of weed macrophytes from a large-scale perspective narrows the necessary decision-making for biodiversity conservation. The present study aimed to assess the occurrence frequency of Egeria densa in lotic and lentic/semi-lotic environments from a Brazilian dammed river, as well as to quantify the attributed explanation (pure or combined) by limnological and spatial variables on species occurrence frequency. Between 2006 and 2010, we repeatedly visited sample points classified as lotic (45) or lentic/semi-lotic environments (23) to collect data on species occurrence and limnological variables. We also generated spatial variables derived from latitude and longitude of sample points. E. densa showed a recurrent occurrence in the sample points classified as lentic/semi-lotic. Both spatial variables (16) and limnological variables (total phosphorus, nitrate, nitrite, transparency and turbidity) significantly contributed to explaining the species occurrence frequency. Forty-nine percent of the occurrence frequency variation was accounted purely by spatial variables. However, less than five percent of occurrence frequency variation was accounted purely by limnological variables. The several dams placed along the river determined the lentic/semi-lotic environments formation and regulated the dispersion processes of individuals of E. densa, consequently causing a recurrent occurrence of this species in particular environmental classes.

The Iron Quadrangle (IQ) is one of the main iron ore producing regions of the world. The exploitation of its reserves jeopardizes the high biological endemism associated with this region. This work aimed to understand the diversity and bacterial potential associated with IQ caves. Floor and ceiling samples of seven ferruginous caves and one quartzite cave were collected, and their microbial relative abundance and diversity were established by 16S rRNA gene amplicon sequencing data. The results showed that ferruginous caves present higher microbial abundance and greater microbial diversity compared to the quartzite cave. Many species belonging to genera found in these caves, such as Pseudonocardia and Streptacidiphilus, are known to produce biomolecules of biotechnological interest as macrolides and polyketides. Moreover, comparative analysis of microbial diversity and metabolic potential in a biofilm in pendant microfeature revealed that the microbiota associated with this structure is more similar to the floor rather than ceiling samples, with the presence of genera that may participate in the genesis of these cavities, for instance, Ferrovum, Geobacter, and Sideroxydans. These results provide the first glimpse of the microbial life in these environments and emphasize the need of conservation programs for these areas, which are under intense anthropogenic exploration.

Digital, Biocontrol and plant growth-promoting bacteria (PGPB) are important agricultural bioinoculants. This study aimed to prospect new potential bioinoculants for a more sustainable agriculture from ferruginous caves of the Brazilian Iron Quadrangle. Culturable bacteria, from seven caves and one canga soil sample, were evaluated for biocontroller activity of the phytopathogens Xanthomonas citri subsp. Citri—Xcc306 (citrus canker), Fusarium oxysporum—Fo (fusariosis), and Colletotrichum lindemuthianum—Cl89 (bean anthracnose). The ability of the superior candidates to solubilize inorganic phosphate, fix nitrogen, and produce hydrolytic enzymes and siderophores was then analyzed. Out of 563 isolates, 47 inhibited the growth of Xcc306 in vitro, of which 9 reduced citrus canker up to 68% when co-inoculated with the pathogen on host plants. Twenty of the 47 inhibited Fo growth directly by 51–73%, and 15 indirectly by 75–81%. These 15 inhibited Cl89 growth in vitro (up to 93% directly and 100% indirectly), fixed nitrogen, produced proteases and siderophores, showed motility ability, produced biofilm, and all but one solubilized inorganic phosphate. Therefore, 15 (2.66%) bacterial isolates, from the genera Serratia, Nissabacter, and Dickeya, act simultaneously as biocontrollers and PGPBs, and could be important candidates for future investigations in planta as an alternative to minimize the use of pesticides and chemical fertilizers through sustainable agricultural management practices., Ciencias Exactas y Naturales

Serratia liquefaciens strain FG3 (SlFG3), isolated from the flower of Stachytarpheta glabra in the Brazilian ferruginous fields, has distinctive genomic, adaptive, and biotechnological potential. Herein, using a combination of genomics and molecular approaches, we unlocked the evolution of the adaptive traits acquired by S1FG3, which exhibits the second largest chromosome containing the largest conjugative plasmids described for Serratia. Comparative analysis revealed the presence of 18 genomic islands and 311 unique protein families involved in distinct adaptive features. S1FG3 has a diversified repertoire of genes associated with Nonribosomal peptides (NRPs/PKS), a complete and functional cluster related to cellulose synthesis, and an extensive and functional repertoire of oxidative metabolism genes. In addition, S1FG3 possesses a complete pathway related to protocatecuate and chloroaromatic degradation, and a complete repertoire of genes related to DNA repair and protection that includes mechanisms related to UV light tolerance, redox process resistance, and a laterally acquired capacity to protect DNA using phosphorothioation. These findings summarize that SlFG3 is well-adapted to different biotic and abiotic stress situations imposed by extreme conditions associated with ferruginous fields, unlocking the impact of the lateral gene transfer to adjust the genome for extreme environments, and providing insight into the evolution of prokaryotes. Coordenacao de Aperfeicoamento de Pessoal de Nivel Superior -Brazil (CAPES)CAPES [001, CFP 51/2013, 3385/2013]; National Council of Technological and Scientific Development (CNPq)National Council for Scientific and Technological Development (CNPq) [481226/2013-3]; Foundation of Protection to Research of the State of Minas Gerais - FAPEMIG [APQ-02387-14, APQ-02357-17]; CNPqNational Council for Scientific and Technological Development (CNPq); Fundect-MS [TO 141/2016, TO 007/2015, 007/2015 SIAFEM 025139]; UFOP grants; Laboratory of Biochemistry and Molecular Biology of the Faculty of Agrarian and Veterinary Sciences UNESP, Jaboticabal campus Thanks to all members of the Laboratory of Biochemistry and Molecular Biology (LBBM, Federal University of Ouro Preto, UFOP) and to the Laboratory of Biochemistry and Molecular Biology of the Faculty of Agrarian and Veterinary Sciences UNESP, Jaboticabal campus, for their support. This study was financed in part by the Coordenacao de Aperfeicoamento de Pessoal de Nivel Superior -Brazil (CAPES) - Finance Code 001 - (the BIGA Project, CFP 51/2013, process 3385/2013), National Council of Technological and Scientific Development (CNPq Process 481226/2013-3), and Foundation of Protection to Research of the State of Minas Gerais - FAPEMIG (process APQ-02387-14 and process APQ-02357-17). LMM, JCS, AMV, NFA and JAF have a research fellowship from CNPq. NFA has grants from Fundect-MS (TO 141/2016 and TO 007/2015) and Fundect-MS (007/2015 SIAFEM 025139). LAGM and LMM have UFOP grants. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

The campo rupestre is a Neotropical azonal vegetation. Its disjoint distribution and the fact that it is an old climatic buffered infertile landscape (OCBIL) have been associated with the high diversity and endemism observed in this environment. Here, we tested whether a micro-endemic species from campo rupestre shows: (1) limited zygotic gene flow; (2) lower gametic than zygotic gene flow structure; (3) substrate-driven genetic structure and (4) no evidence of Pleistocene local extinction or recolonization. By sequencing intergenic plastid regions, phenotyping inter simple sequence repeats (ISSR) and modelling present and past species suitability distributions for Vellozia auriculata we conclude that (1) zygotic gene flow is limited; (2) gametic gene flow is recurrent, but limited by elevation and distance; (3) there is no support for genetic structure driven by substrate and (4) Pleistocene climatic changes did not restrict the species to refugia, with local persistence. As long-term gene flow restrictions may lead to differentiation and speciation, our data helps to corroborate that the campo rupestre is both a cradle (due to low zygotic gene flow, prolonged isolation and consequent differentiation) and a lineage museum (due to local survival during climate oscillations). We highlight two distinct evolutionarily significant units (ESU), providing information for better conservation practice.

Species distribution modeling (SDM) studies of aquatic macrophytes are still attached to methodological paradigms focused on terrestrial plants, such as the use of bioclimatic layers. Our goal was to evaluate the applicability of this paradigm based on a SDM study of Egeria densa, Pontederia crassipes, and Salvinia auriculata in the São Francisco river, Brazil. We compared performances of optimizations of computed models using AUC and TSS with distribution records of these species and bioclimatic layers, or limnological layers generated from the interpolation of data obtained in the field. We calculated models using six algorithms. The models calculated using layers of limnological variables had higher performances than did those calculated using layers of bioclimatic variables, except when the Maximum Entropy Default algorithm was used. We attribute these results to the specificities of the data obtained to develop the limnological layers, such as observations obtained in different habitats of the river and during different hydrologic periods. We conclude that the use of bioclimatic layers, a methodological paradigm traditionally used for SDM of aquatic macrophytes, can be questionable for some situations, such as in investigations at local and regional scales.

Made available in DSpace on 2021-06-25T10:44:05Z (GMT). No. of bitstreams: 0 Previous issue date: 2020-11-01 Here we present and analyze the complete genome of Alcaligenes faecalis strain Mc250 (Mc250), a bacterium isolated from the roots of Mimosa calodendron, an endemic plant growing in ferruginous rupestrian grasslands in Minas Gerais State, Brazil. The genome has 4,159,911 bp and 3,719 predicted protein-coding genes, in a single chromosome. Comparison of the Mc250 genome with 36 other Alcaligenes faecalis genomes revealed that there is considerable gene content variation among these strains, with the core genome representing only 39% of the protein-coding gene repertoire of Mc250. Mc250 encodes a complete denitrification pathway, a network of pathways associated with phenolic compounds degradation, and genes associated with HCN and siderophores synthesis; we also found a repertoire of genes associated with metal internalization and metabolism, sulfate/sulfonate and cysteine metabolism, oxidative stress and DNA repair. These findings reveal the genomic basis for the adaptation of this bacterium to the harsh environmental conditions from where it was isolated. Gene clusters associated with ectoine, terpene, resorcinol, and emulsan biosynthesis that can confer some competitive advantage were also found. Experimental results showed that Mc250 was able to reduce (∼60%) the virulence phenotype of the plant pathogen Xanthomonas citri subsp. citri when co-inoculated in Citrus sinensis, and was able to eradicate 98% of juveniles and stabilize the hatching rate of eggs to 4% in two species of agricultural nematodes. These results reveal biotechnological potential for the Mc250 strain and warrant its further investigation as a biocontrol and plant growth-promoting bacterium. Núcleo de Pesquisas em Ciências Biológicas (NUPEB) Universidade Federal de Ouro Preto Departamento de Ciências Biológicas (DECBI) Instituto de Ciências Exatas e Biológicas (ICEB) Universidade Federal de Ouro Preto (UFOP) Instituto Pristino Departamento de Bioquimica (DBQ) Instituto de Quimica (IQ) Universidade de São Paulo (USP) Instituto de Biotecnologia Aplicada a Agropecuária (BIOAGRO) Universidade Federal de Vicosa (UFV) Departamento de Tecnologia Faculdade de Ciências Agrárias e Veterinárias de Jaboticabal (FCAV) Universidade Estadual Paulista (UNESP) Faculdade de Computação (FACOM) Universidade Federal de Mato Grosso do Sul Departamento de Tecnologia Faculdade de Ciências Agrárias e Veterinárias de Jaboticabal (FCAV) Universidade Estadual Paulista (UNESP)

The ferruginous rupestrian grasslands (FRG) in the Iron Quadrangle (IQ) are ecosystems characterized by rocky soils with reduced availability of water and nutrients, but high levels of metals. In order to comprehend the interference of microorganisms on the adaptive process of endemic plant Mimosa calodendrum (Fabaceae), bacteria associated with its roots and rhizosphere were isolated. Fourteen isolates were obtained and subsequently grown in the presence of different concentrations of arsenic (As) species. The isolate Mc250, an Alcaligenes faecalis strain, resisted to 10 mM of As (III) and 800 mM of As (V). In the presence of this strain, atomic spectrometer detected a reduction of 55% for As (III) and 72% for As (V) respectively in 10 mM and 500 mM solution. Scanning electron microscopy of this isolate demonstrated morphological modification and EDX spectroscopy revealed the presence of both As species adsorbed on the membrane, justifying the removal observed in the in vitro assays. To validate this potential removal of As in vivo, tomato plants were used as grown model in the presence and absence of A. faecalis in soil previously contaminated with 5 mM of As (III). After 14 days, plants from contaminated soil had their growth improved when compared to untreated control plants. All these results suggest for the first time that plant-associated bacteria from FRG-IQ present potential for soil rhizoremediation and may benefit the adaptive processes of plants in extreme environments including application in recovering degraded areas.

Made available in DSpace on 2019-10-06T15:59:04Z (GMT). No. of bitstreams: 0 Previous issue date: 2018-10-01 Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES) Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq) Fundação de Amparo à Pesquisa do Estado de Minas Gerais (FAPEMIG) Microorganisms associated with plants have a great biotechnological potential, but investigations of these microorganisms associated with native plants in peculiar environments has been incipient. The objective of this study was to analyze the plant growth-promoting bacteria potential of cultivable bacteria associated with rare plants from the ferruginous rocky fields of the Brazilian Iron Quadrangle. The roots and rhizospheres of nine endemic plants species and samples of a root found in a lateritiric duricrust (canga) cave were collected, the culturable bacteria isolated and prospected for distinct biotechnological and ecological potentials. Out of the 148 isolates obtained, 8 (5.4%) showed potential to promote plant growth, whereas 4 (2.7%) isolates acted as biocontrol agents against Xanthomonas citri pathotype A (Xac306), reducing the cancrotic lesions by more than 60% when co-inoculated with this phytopathogen in Citrus sinensis plants. Moreover, other 4 (2.7%) isolates were classified as potential bioremediation agents, being able to withstand high concentrations of arsenite (5 mM As3+) and arsenate (800 mM As5+), by removing up to 35% and 15% of this metalloid in solution, respectively. These same four isolates had a positive influence on the growth of both the roots and the aerial parts when inoculated with tomato seeds in the soil contaminated with arsenic. This is the first time that an investigation highlights the potentialities of bacteria associated with rare plants of ferruginous rocky fields as a reservoir of microbiota of biotechnological and ecological interest, highlighting the importance of conservation of this area that is undergoing intense anthropic activity. Graphical abstract: [Figure not available: see fulltext.]. Programa de Pós-graduação em Biotecnologia Núcleo de Pesquisas em Ciências Biológicas Universidade Federal de Ouro Preto Departamento de Ciências Biológicas (DECBI) Instituto de Ciências Exatas e Biológicas (ICEB) Universidade Federal de Ouro Preto (UFOP) Departamento de Tecnologia Universidade Estadual Paulista UNESP, Campus de Jaboticabal Instituto Prístino Departamento de Tecnologia Universidade Estadual Paulista UNESP, Campus de Jaboticabal CAPES: 3385/2013 CNPq: 481226/2013-3 FAPEMIG: APQ-02387-14 CAPES: CFP 51/2013

Ironstone ranges are considered hotspots for higher plants α and β diversity. The lack of studies and the intense degradation of the ironstone ranges, due to mining, motivated us to compile, for the first time, a list of vascular plants collected on iron-rich derived substrates from ancient landscape of south-eastern Brazil. All existing records in the Brazilian Virtual Herbarium of Flora and Fungi for each of the 43 municipalities containing ironstone ranges were downloaded, resulting in 17,954 vouchers identified to the species level. We found 2,933 species belonging to 160 families and 818 genera. For the first time, we identified 148 species mentioned in endangered flora official lists and 48 narrow endemic species. Collecting efforts must still be supported to properly sample the vegetation since, for 143 sites, less than 10 records/site were found. This dataset will assist with the indication of dozens of plant species whose threat criteria must be urgently assessed to subsidise public policies on the use and conservation of the Brazilian flora.

Current techniques for estimating the extent of occurrence (EOO) of species, especially those with a naturally disjunct distribution and limited available data, lead to overestimations of their geographic distributions. Accurate EOO estimates are of great importance because they are used to assess conservation status. Topological methods, such as those proposed by the International Union for Conservation of Nature (IUCN), are not able to estimate the geographical distribution of these species accurately because they do not consider the abiotic characteristics suitable to maintain viable populations. In this study, we propose the use of ecological niche models (ENMs) to estimate the EOO. We use the Maximum Entropy (MaxEnt) algorithm and the topological method suggested by IUCN (α-hull method) to estimate the EOO for a species with disjunct distribution and limited available data. The estimate obtained using the ENM was considered the most accurate because only areas with suitable abiotic conditions were taken into account. Thus, analyses related to the conservation status of species become more accurate, especially when evaluating the effects of potential threats in the potential areas occupied by the taxon. The estimate obtained from ENM can also assist the design of conservation strategies for the species, by indicating areas for specific surveys and assessing changes in the EOO over time.

During the Pleistocene a fauna composed of large (biomass > 44 kg) and giant mammals (biomass > 1000 kg) that are usually associated with open environments lived in the Brazilian Intertropical Region. We present here new information concerning the paleoecology and chronology of some species of this megafauna. Carbon isotope analyses were performed for a better understanding of the paleoecology of the species Eremotherium laurillardi (Lund, 1842), Notiomastodon platensis (Ameghino, 1888) and Toxodon platensis (Owen, 1849). The δ13C data allow attributing a generalist diet to these species, which varied according to the kind of habitat in which they lived. In more open habitats all species were grazers; in mixed habitats E. laurillardi and T. platensis were mixed feeders, and N. platensis was grazer; and in more closed habitats all species were mixed feeders.

The workshop ‘ Species distribution models: applications, challenges and perspectives ’ held at Belo Horizonte (Brazil), 29–30 August 2011, aimed to review the state-of-the-art in species distribution modelling (SDM) in the neotropical realm. It brought together researchers in ecology, evolution, biogeography and conservation, with different backgrounds and research interests. The application of SDM in the megadiverse neotropics—where data on species occurrences are scarce—presents several challenges, involving acknowledging the limitations imposed by data quality, including surveys as an integral part of SDM studies, and designing the analyses in accordance with the question investigated. Specific solutions were discussed, and a code of good practice in SDM studies and related field surveys was drafted.

ISSN 1948-6596 news and update workshop summary The application of species distribution models in the megadi- verse Neotropics poses a renewed set of research questions Species distribution models: applications, challenges and perspectives – Belo Horizonte, Brazil, 29 th –30 th August 2011 The community of researchers and technicians interested in biogeography is large and growing in Brazil, with members coming from fields as di- verse as ecology, evolution and conservation. The increment in the number of postgraduate pro- grams in ecology and evolutionary biology is linked to many research questions about the causes and dynamics of species’ ranges, as well as about their consequences for short-term evolu- tionary processes. As a result, the use (and abuse) of species distribution models (SDMs) as a tool in research and technical studies has grown rapidly in recent years. Systems that integrate biodiver- sity databases (e.g. SpeciesLink 1 ) allow one to ob- tain distributional information about many spe- cies; and easy-to-use SDM software (e.g. MaxEnt 2 , Phillips et al. 2004, or openModeller 3 , Munoz et al. 2011) is also available online. The easy avail- ability of data and SDM tools provides a powerful means for answering questions about the geo- graphic distribution of species. Potential users include non-specialist researchers, untrained post- graduate students and government technicians. But is this helping to develop a sound and solidly grounded knowledge of the distribution of Neotropical diversity? In order to unite the Brazilian community of SDM users and provide them with a better under- standing of the technique, the Postgraduate Course on Plant Biology of the Universidade Fed- eral de Minas Gerais organized a workshop in Belo Horizonte last August. This workshop allowed more than 100 students and technicians to meet and discuss with researchers working with SDMs. The main conclusions of the meeting were that there is a growing interest in using the technique to study species’ distributions and find unknown populations of rare species, and that there is a need for a code of good practice in both field sur- veys and SDM applications. These conclusions have been already discussed elsewhere (Kamino et al. 2011). Here we develop further one of the problems identified during the workshop: the lack of clear questions in many studies using SDMs; in other words, the mere application of species dis- tribution modelling as a fashionable technique often ‘justifies’ a study. Reviews summarizing the most important challenges for SDMs (e.g. Araujo and Guisan 2006, Zimmermann et al. 2010, Peterson et al. 2011) typically present how users view the field and what problems they perceive in each step in the modelling process. However, things move fast in this emerging field of research because, while the number of studies using SDMs increases steadily (see Fig. 1 in Lobo et al. 2010), the technique is also used to address completely new questions. Thus, the challenges to their application are them- selves changing. We believe that the most impor- tant of these challenges are theoretically rather than methodologically grounded, although we recognize that both kinds of problems overlap to some extent. Here we outline the basic questions that we believe SDM users must take into account while studying current species’ distributions. Soberon (2007) provides perhaps the best starting point to understand the theoretical prob- lems of SDMs (see also Colwell and Rangel 2009; Soberon 2010). The first problem is the definition of a clear research question. Here it is important to discriminate between theoretical questions such as “Why is this species here?” – which are more interesting in the long run – from those that are eminently practical such as “Where is this spe‐ cies?” – which unfortunately seem to be the most common. But even practical questions stimulated 1 http://www.splink.org.br; last accessed 10/11/2011 2 http://www.cs.princeton.edu/~schapire/maxent/; last accessed 10/11/2011 3 http://openmodeller.sourceforge.net/; last accessed 10/11/2011 frontiers of biogeography 4.1, 2012 — © 2012 the authors; journal compilation © 2012 The International Biogeography Society