Search

Marine cyanobacteria play an important role in trace metal cycling in the oceans. However, the influence of bacterial detritus following cell lysis – that includes both particulate organic matter (POM) and dissolved organic matter (DOM) – is less understood. Previous investigations have shown that the ratio of bacterial detritus to living cells increases significantly with ocean depth, indicating that the former plays a central role in trace metal cycling and eventual sequestration in deep marine sediments. Thus, in this study we produced detritus from the mechanical lysis of the common marine cyanobacterium Synechococcus sp. PCC 7002 (referred to as cyPOM and cyDOM), and then measured their buffering capacity through proton adsorption and release via potentiometric acid-base titrations. Both cyPOM and cyDOM were best modelled using a 2-site non-electrostatic protonation model. The cyPOM fraction possessed ligands with pKa values of 5.78 (±0.07) and 9.01 (±0.29) with corresponding site concentrations of 41.8 (±8.15) µmol g−1 and 41.2 (±5.28) µmol g−1, while cyDOM had pKa values of 4.89 (±0.22) and 6.80 (±0.22) and corresponding site concentrations of 42.8 (±14.6) µmol g−1 and 37.3 (±16.5) µmol g−1. As a comparison, intact Synechococcus cells were previously reported to be best modelled by invoking 3-sites with overall ligand densities more than double that of cyPOM and cyDOM. Trace metal (Cd, Co, Cu, Ni, and Zn) adsorption experiments indicate that cyPOM has a lower affinity towards trace metals than intact Synechococcus cells, evidenced by lower trace metals adsorption per gram of dry mass and therefore less trace metal sequestration potential. This implies that intact Synechococcus cells are chiefly responsible for trace metal sequestration, even at high cyPOM proportions (10:1 – cyPOM:Synechococcus) that are more representative of POM that reaches the seafloor. The cyDOM-trace metal association could not be determined experimentally; thus we applied existing thermodynamic data from modern marine DOM studies acquired via potentiometric titrations and metal-binding constants. Unlike cyPOM, metal speciation is almost entirely accounted for in the dissolved fraction (>99.9%). These results further the view that DOM is the most important microbial fraction in controlling metals speciation in the water column.

Hydrologic dysfunction associated with desertification of grazing lands likely depends on two opposing biophysical drivers, compaction by livestock and bioturbation by plant roots and soil biota. To understand which is most important, we conducted a long-term field experiment. We tested the effects of phytobiomass (control vs. herbicide treated) and three ungulate disturbance treatments (none, once, and twice disturbed) on soil water transport in northern mixed-grass prairie. Field-saturated hydraulic conductivity (i.e., infiltration) was primarily reduced by the most severe (twice disturbed) ungulate disturbance treatment. To a lesser degree, ungulate disturbance and phytobiomass interacted, and similar levels of hydrologic dysfunction were detected for plots annually treated with herbicide and disturbed by a single livestock disturbance event (and while soils were dry and resistant to compaction) and naturally vegetated plots that had been twice disturbed (including while soils were wet and susceptible to compaction). Our findings suggest hydrologic dysfunction in grazing lands is mainly due to compaction by ungulates, especially when grazing at high stocking rates and while areas are vulnerable to compaction (e.g., fine soils, wet soils, not well vegetated).

High levels of dissolved SO4 in drinking water can adversely affect livestock performance. Some plant species may help to remove SO4 and cleanse drinking water, especially S-hyperaccumulators. However, little is known about the capacity of S-hyperaccumulators to grow in rangeland wetland environments. Here we measured plant properties, S concentration, and S mass of nine plant species. Plants were grown in a wetland environment on an artificial floating island (AFI) in a mesocosm supplied with high SO4 water (2 430−4 730 parts per million [PPM]) from a rangeland reservoir. Water properties were measured throughout the experiment. We also used our data and data from the literature to parameterize simulations and estimate the number of plants (per L) needed to reduce the SO4 concentration from 2 000 PPM to a recommended limit of 1 000 PPM. The average sulfur concentration of the nine species was 3.8 times greater than the average of 39 species from the literature. Among the nine species, Brassica napus L., B. napus var. pabularia (DC.) Rchb., and Brassica septiceps (L. H. Bailey) L. H. Bailey tended to have the greatest shoot S concentrations. The total S mass per plant was 5 times greater for B. septiceps (44 mg × plant−1) than B. juncea (L.) Czern. We found no other appreciable differences in total S mass among species. The simulations suggest that ≥ 1.9 plants × L−1 of B. septiceps or ≥ 0.6 plants × L−1 of B. oleracea L. would be needed to reduce the water's SO4 concentration from 2 000 PPM to the recommended limit. Given the small amount of S removed (per plant) relative to the vast amount of dissolved SO4 possible in rangeland water sources, planted AFIs are not likely to be a practical tool for reducing SO4 in livestock drinking water. Conversely, water treatment systems may be justified in some cases.

While considerable research has quantified effects of grazing management and precipitation on plant communities, less is known about how seasonal effects influence extrusa diet quality selected by grazing ruminants. We tested effects of cattle grazing to two residual herbages (600 kg [moderate] or 300 kg [low] animal unit mo [AUM]/ha) and two grazing seasons (summer and fall) on 20 indicators of ruminant extrusa diet quality over a 6-yr period. We found no effect of residual herbage on 13 indicators of diet extrusa quality (P ≥ 0.13) and no effect of season on 4 indicators of extrusa diet quality (P ≥ 0.0773). We did, however, detect effects of yr on extrusa diet quality metrics and nutrients, likely due to variation in annual precipitation, which ranged from 63.9% to 138.6% of the long-term average. Most noticeably, the mineral Mn in extrusa was substantially lower in yrs with higher precipitation (P

Sedimentation velocities of various chemical sediments are typically calculated using Stokes's law. However, applying it to chemical sediments that form in situ in the water column is not ideal because the particle properties do not fulfill many of the assumptions underpinning the applicability of Stokes' law. As a consequence, it has been difficult to predict the sedimentation rate of ancient chemical sediments, such as Precambrian banded iron formations (BIF), because their primary sediments likely comprised aggregates of ferric hydroxides, such as ferrihydrite [Fe(OH)3], and marine bacterial biomass, including cyanobacteria. In this work we use a new experimental method to address the mechanisms by which primary BIF sediment, formed by the oxidation of dissolved Fe(II) by O2 and simultaneously incubated with cyanobacterium Synechococcus sp., were deposited to the Archean ocean. Specifically, we formed the aggregates in situ over a wide range of initial pH and Fe(II) concentrations, continuously recorded the entire settling processes of aggregates under each condition, and then processed the data in MATLAB according to different settling mechanisms. Our results demonstrate that ferrihydrite–cyanobacteria aggregates settled to the ocean floor either through the formation of uniformly descending concentration fronts or through convective plumes. The sedimentation mechanism depended on both initial Fe(II) concentration and the pH. Correspondingly, two algorithms were developed to characterize the sedimentation velocity. These algorithms tracked the alteration of light intensity from low to high as sediments descended from an initially homogeneous state through a water tank, and as well calculated the average light intensity over time, from which vertical time series were constructed allowing calculation of the sedimentation velocity. Our method not only provides an accurate estimation of the in situ sedimentation velocity of cell–mineral aggregates, but also provides new insights into the physical mechanisms by which the primary sediments composing BIF were deposited.

Invasive plants may alter arbuscular mycorrhizal fungi (AMF) communities on which resident plants depend. To determine if the invader crested wheatgrass (Agropyron cristatum [L.] Gaertn.) associates with different AMF than resident plants, we compared AMF communities of six A. cristatum−dominated sites to five sagebrush steppe and three mixed-grass prairie sites in the Northern Great Plains. Consistent with findings on some other invaders, roots of A. cristatum were without AMF and supported fewer AMF operational taxonomic units than seven native species and two nonnative species. Restoring natives to A. cristatum sites is notoriously difficult. Our findings suggest a lack of soil mutualists may contribute to the difficulty.

Plant‐soil feedbacks (PSFs) have been shown to strongly affect plant performance under controlled conditions, and PSFs are thought to have far reaching consequences for plant population dynamics and the structuring of plant communities. However, thus far the relationship between PSF and plant species abundance in the field is not consistent. Here, we synthesize PSF experiments from tropical forests to semiarid grasslands, and test for a positive relationship between plant abundance in the field and PSFs estimated from controlled bioassays. We meta‐analyzed results from 22 PSF experiments and found an overall positive correlation (0.12 ≤ r¯ ≤ 0.32) between plant abundance in the field and PSFs across plant functional types (herbaceous and woody plants) but also variation by plant functional type. Thus, our analysis provides quantitative support that plant abundance has a general albeit weak positive relationship with PSFs across ecosystems. Overall, our results suggest that harmful soil biota tend to accumulate around and disproportionately impact species that are rare. However, data for the herbaceous species, which are most common in the literature, had no significant abundance‐PSFs relationship. Therefore, we conclude that further work is needed within and across biomes, succession stages and plant types, both under controlled and field conditions, while separating PSF effects from other drivers (e.g., herbivory, competition, disturbance) of plant abundance to tease apart the role of soil biota in causing patterns of plant rarity versus commonness., Across studies, we detected a small but significant positive correlation between plant‐soil feedbacks measured during controlled experiments and plant field abundance. Plants that are rare are seemingly burdened more by the negative effects of harmful soil biota than common plants.

Interactions between microorganisms and clay minerals influence the transport and cycling of metal contaminants in both marine and terrestrial environments. The present study was conducted to quantify the adsorption of dissolved cadmium, Cd(II), under seawater-like conditions to the marine cyanobacterium Synechococcus sp. PCC 7002, three common clay minerals (kaolinite, montmorillonite and illite), as well as cell-clay aggregates. We show here that the Synechococcus-only experiments removed the most Cd above pH 5.5, followed in decreasing order by aggregates of 50% cells:50% individual clays, aggregates of cells and all 3 clays, and individual clays. Electron microscope imaging showed that clays associated in a tangential edge-on orientation to the cells in Synechococcus-clay mineral aggregates. A non-electrostatic surface complexation modeling approach was used to fit Cd adsorption onto Synechococcus cells and individual clay minerals. The resulting Cd binding constants were then used in consort with surface functional group pKa values and site concentrations to accurately predict the extent of Cd adsorption onto the Synechococcus-clay mineral aggregates using the component additivity (CA) approach. We observed that the addition of cyanobacterial cells to clay mineral suspensions led to significantly larger mean aggregate sizes of clay minerals, enhancing the clay sedimentation rate. Although specifically focused on Cd, our study indicates that the ratio of bacterial plankton to clay minerals is an important determinant in terms of understanding the rate with which metals are transferred from the water column to the seafloor.

The exotic winter annual grass Bromus tectorum L. (downy brome or cheatgrass) infests millions of hectares of western rangelands. Weed-suppressive bacteria (ACK55 and D7 strains of Pseudomonas fluorescens Migula 1895) have been shown to reduce B. tectorum populations in eastern Washington. Unfortunately, outside of Washington, little is known about the efficacy of these or other weed-suppressive bacteria. We used Petri-plate and plant-soil bioassays to test effects of ACK55 and D7 on B. tectorum from Montana and Wyoming. We also tested effects of ACK55 on B. tectorum at six field sites in Montana and one in Wyoming. P. fluorescens reduced B. tectorum germination and root and shoot lengths in Petri-plates but had no effect on plants during growth chamber plant-soil bioassays or field experiments. Bromus arvensis L. (field brome or Japanese brome), a species similar to B. tectorum, was prevalent at two of our sites, and ACK55 was ineffective against B. arvensis as well. Our findings contribute to a growing body of evidence that the ACK55 and D7 strains of P. fluorescens are not reliable tools for controlling B. tectorum in the Northern Great Plains, Central Rocky Mountains, and elsewhere.

Exotic winter annual grasses (Bromus spp.) are a problem in North American rangelands. Defoliation, litter, and mosses are thought to regulate invasive annual Bromus species. We conducted a field experiment that tested effects of mechanical mowing and fungicide applications on Bromus arvensis, other and total graminoids, forbs, litter, and moss. Treatments caused litter biomass and moss cover to vary, which enabled testing whether litter and mosses explain variation in B. arvensis biomass. Two yr after cessation of experimental treatments, mowing treatments caused persistent reductions in B. arvensis, total graminoid, and litter biomasses but had no effect on other graminoid and forb biomasses. We detected a positive relationship between litter and B. arvensis. Fungicide applications increased moss cover and other and total graminoid biomasses, thereby suggesting mosses and several graminoids were released from the suppressive effects of biota (e.g., lichen, pathogenic fungi) susceptible to the fungicide. We found no relationship, however, between moss cover and B. arvensis. In temperate and semiarid ecosystems, mowing during flowering and before seed drop coupled with removal of clippings is likely to help control invasive bromes and fungicide additions may increase grass production.

Environmental circumstances shaping soil microbial communities have been studied extensively, but due to disparate study designs it has been difficult to resolve whether a globally consistent set of predictors exists, or context-dependency prevails. Here, we used a network of 18 grassland sites (11 sampled across regional plant productivity gradients) to examine i) if the same abiotic or biotic factors predict both large- and regional-scale patterns in bacterial and fungal community composition, and ii) if microbial community composition differs consistently with regional plant productivity (low vs high) across different sites. We found that there is high congruence between predictors of microbial community composition across spatial scales; bacteria were predominantly associated with soil properties and fungi with plant community composition. Moreover, there was a microbial community signal that clearly distinguished high and low productivity soils that was shared across worldwide distributed grasslands suggesting that microbial assemblages vary predictably depending on grassland productivity.

Highlights • The adsorption of Co, Ni, Cu, and Zn to Synechococcus sp PCC 7002 was studied using a surface complexation modelling approach. • A surface complexation model was developed to determine the thermodynamic binding constants of Co, Ni, Cu, and Zn to Synechococcus. • The surface complexation model was able to accurately predict the competitive adsorptionof the four metals to Synechococcus. • Synechococcus could have been an important exit channel for trace elements into ancient sediments such as BIF Marine bacterial plankton play a key role in elemental cycling through their ability to bind, assimilate, metabolize, and modify the redox state of trace metals in seawater. Of those processes, arguably the least studied are the mechanisms underpinning trace metal adsorption to planktonic marine bacteria, despite a plethora of literature pertaining to terrestrial species. Recently, Liu et al. (2015) demonstrated that the marine cyanobacterium Synechococcus sp. PCC 7002 has the capacity to remove appreciable amounts of Cd2+, a proxy for other divalent cations, from seawater by adsorption. In this study, we build on that work and employ a surface complexation modelling (SCM) approach using titration and pH adsorption edge experiments to calculate the thermodynamic binding constants of four bioessential transition metals (Co, Ni, Cu, Zn) to Synechococcus in simulated seawater. Based on the titration results, the major functional groups involved in metal binding were carboxyl groups with a pKa of 5.59 and phosphoryl groups with a pKa of 7.61. Metal adsorption experiments indicate that Synechococcus can bind considerable concentrations of Zn, Cu, Ni, and Co at pH 8. When all four metals are simultaneously added to solution, the same adsorption pattern of Zn > Cu > Ni > Co is maintained, and accurately predicted by the SCM. Based on average marine cell densities and turnover rates of Synechococcus cells in the photic zone, we calculate that Synechococcus, in the absence of competing ligands such as dissolved organic matter (DOM), has the theoretical capacity to remove nearly all of the free metal cations from seawater. These observations highlight the surface reactivity of marine cyanobacteria as a potentially important vector for the transfer of dissolved metals from the photic zone to deeper waters or the seafloor in modernoceans, but they also have implications for the Precambrian oceans as sinking cyanobacteria could have acted as an exit channel for trace elements into ancient sediments including banded iron formations (BIF).

The ancestors of cyanobacteria generated Earth’s first biogenic molecular oxygen, but how they dealt with oxidative stress remains unconstrained. Here we investigate when superoxide dismutase enzymes (SODs) capable of removing superoxide free radicals evolved and estimate when Cyanobacteria originated. Our Bayesian molecular clocks, calibrated with microfossils, predict that stem Cyanobacteria arose 3300–3600 million years ago. Shortly afterwards, we find phylogenetic evidence that ancestral cyanobacteria used SODs with copper and zinc cofactors (CuZnSOD) during the Archaean. By the Paleoproterozoic, they became genetically capable of using iron, nickel, and manganese as cofactors (FeSOD, NiSOD, and MnSOD respectively). The evolution of NiSOD is particularly intriguing because it corresponds with cyanobacteria’s invasion of the open ocean. Our analyses of metalloenzymes dealing with reactive oxygen species (ROS) now demonstrate that marine geochemical records alone may not predict patterns of metal usage by phototrophs from freshwater and terrestrial habitats., How early photosynthesizers managed oxidative stress remains relatively unresolved. Analyses of enzymes dealing with reactive oxygen species traces the evolutionary history of superoxide dismutases and finds evidence of CuZnSOD in the ancestor of all cyanobacteria, dating back to the Archaean.

Fluorapatite (FAp) is the largest phosphorous (P) reservoir on Earth. However, due to its low solubility, dissolved P is severely deficient in the pedosphere. Fungi play a significant role in P dissolution via excretion of organic acids, and in this regard, it is important to understand their impact on P cycling. The object of this study was to elucidate the balance between P release and F toxicity during FAp dissolution. The bioweathering of FAp was assisted by a typical phosphate-solubilizing fungus, Aspergillus niger. The release of elements and microbial activities were monitored during 5-day incubation. We found that the release of fluorine (F) was activated after day 1 (~90 mg/L), which significantly lowered the phosphate-solubilizing process by day 2. Despite P release from FAp being enhanced over the following 3 days, decreases in both the amount of biomass (52% decline) and the respiration rate (81% decline) suggest the strong inhibitory effect of F on the fungus. We thus concluded that F toxicity outweighs P supply, which in turn inhibits fungi growth and prevents further dissolution of FAp. This mechanism might reflect an underappreciated cause for P deficiency in soils.

Highlights • The adsorption of Cd to Synechocystis sp. PCC 6803 was investigated at both marine and freshwater ionic strength. • The thermodynamic binding constants of Cd to Synechocystis were calculated using a surface complexation modeling approach. • Synechocystis and other planktonic cyanobacteria may be an important vector of trace metals transport to marine settings. Cyanobacteria are abundant in nearly every surface environment on Earth. Understanding their chemical reactivity and metal binding capacity with varying ionic strength (IS) is paramount to understanding trace metal cycling in natural environments. We conducted an investigation on the cell surface reactivity of the freshwater cyanobacterium Synechocystis sp. PCC 6803 at freshwater (0.01 M NaCl) and marine (0.56 M NaCl) IS. Potentiometric titration data were used to develop a multiple discrete site, non-electrostatic surface complexation model (SCM), and corresponding cell surface functional group identities were verified using attenuated total reflectance Fourier transform infrared (ATR-FTIR) spectroscopy. Synechocystis cells were best modeled in FITEQL 4.0 using a non-electrostatic 2-site protonation model. Cadmium (Cd) adsorption experiments paired with SCM was utilized to calculate the binding constants of Cd. Synechocystis surface functional groups demonstrated a stronger affinity for Cd across the entire pH range studied (3–9) at freshwater IS, with the greatest difference at circumneutral pH (6–8) where Cd adsorption in freshwater IS was 60% greater than at marine IS. These data combined with the ubiquitous distribution of Synechocystis in freshwater and brackish environments suggest that these organisms could play an important role in trace metal cycling in environments with large salinity gradients, such as estuaries and deltas, and could act as a transport mechanism for trace metals from terrestrial to marine settings.

The ancestors of cyanobacteria generated Earth’s first biogenic molecular oxygen but how they dealt with its toxicity remains unconstrained. Here we investigated when superoxide dismutase enzymes (SODs) capable of removing superoxide free radicals evolved. We found phylogenetic evidence that ancestral cyanobacteria used SODs with copper and zinc cofactors (CuZnSOD) during the Archaean. By the Paleoproterozoic, they became genetically capable of using iron, nickel, and manganese as cofactors (FeSOD, NiSOD, and MnSOD respectively). The evolution of NiSOD is particularly intriguing because it has been previously hypothesized that declining seawater Ni concentrations at the end of the Archaean caused a fundamental shift in the marine biosphere away from methanogenesis towards oxygenic photosynthesis. Our novel analyses of enzymes dealing with O2 toxicity now demonstrate that the beneficiaries of this chemical change - marine planktonic cyanobacteria - were able to utilize the remaining Ni from seawater 0.9-0.8 Ga to supplement their existing metabolic capabilities.

Cellular senescence is characterized by an irreversible cell cycle arrest and a pro‐inflammatory senescence‐associated secretory phenotype (SASP), which is a major contributor to aging and age‐related diseases. Clearance of senescent cells has been shown to improve brain function in mouse models of neurodegenerative diseases. However, it is still unknown whether senescent cell clearance alleviates cognitive dysfunction during the aging process. To investigate this, we first conducted single‐nuclei and single‐cell RNA‐seq in the hippocampus from young and aged mice. We observed an age‐dependent increase in p16Ink4a senescent cells, which was more pronounced in microglia and oligodendrocyte progenitor cells and characterized by a SASP. We then aged INK‐ATTAC mice, in which p16Ink4a‐positive senescent cells can be genetically eliminated upon treatment with the drug AP20187 and treated them either with AP20187 or with the senolytic cocktail Dasatinib and Quercetin. We observed that both strategies resulted in a decrease in p16Ink4a exclusively in the microglial population, resulting in reduced microglial activation and reduced expression of SASP factors. Importantly, both approaches significantly improved cognitive function in aged mice. Our data provide proof‐of‐concept for senolytic interventions' being a potential therapeutic avenue for alleviating age‐associated cognitive impairment., Senescence is a major contributor to aging and age‐related diseases. However, it is still unknown whether senolytics impact on cognitive function during the aging process. We found that both pharmacogenetic clearance of p16Ink4a senescent cells or treatment with senolytic cocktail Dasatinib and Quercetin, reduced senescent microglia in the hippocampus and improved cognitive function in aged mice.

Forest rings are 50-1600 m diameter circular structures found in boreal forests around the globe. They are believed to be chemically reducing chimney features, having an accumulation of reduced species in the middle of the ring and oxidation processes occurring at the ring's edges. It has been suggested that microorganisms could be responsible for charge transfer from the inside to the outside of the ring. To explore this, we focused on the changes in bacterial and archaeal communities in the ring edges of two forest rings, the 'Bean' and the 'Thorn North' ring, in proximity to each other in Ontario, Canada. The drier samples from the methane-sourced Bean ring were characterized by the abundance of bacteria from the classes Deltaproteobacteria and Gemmatimonadetes. Geobacter spp. and methanotrophs, such as Candidatus Methylomirabilis and Methylobacter, were highly abundant in these samples. The Thorn North ring, centred on an H2 S accumulation in groundwater, had wetter samples and its communities were dominated by the classes Alphaproteobacteria and Anaerolineae. This ring's microbial communities showed an overall higher microbial diversity supported by higher available free energy. For both rings, the species diversity was highest near the borders of the 20-30 m broad ring edges.

Plants interact simultaneously with each other and with soil biota, yet the relative importance of competition vs. plant?soil feedback (PSF) on plant performance is poorly understood. Using a meta-analysis of 38 published studies and 150 plant species, we show that effects of interspecific competition (either growing plants with a competitor or singly, or comparing inter- vs. intraspecific competition) and PSF (comparing home vs. away soil, live vs. sterile soil, or control vs. fungicide-treated soil) depended on treatments but were predominantly negative, broadly comparable in magnitude, and additive or synergistic. Stronger competitors experienced more negative PSF than weaker competitors when controlling for density (inter- to intraspecific competition), suggesting that PSF could prevent competitive dominance and promote coexistence. When competition was measured against plants growing singly, the strength of competition overwhelmed PSF, indicating that the relative importance of PSF may depend not only on neighbour identity but also density. We evaluate how competition and PSFs might interact across resource gradients; PSF will likely strengthen competitive interactions in high resource environments and enhance facilitative interactions in low-resource environments. Finally, we provide a framework for filling key knowledge gaps and advancing our understanding of how these biotic interactions influence community structure.

Differences in the direction and degree to which invasive alien and native plants are influenced by mycorrhizal associations could indicate a general mechanism of plant invasion, but whether or not such differences exist is unclear. Here, we tested whether mycorrhizal responsiveness varies by plant invasive status while controlling for phylogenetic relatedness among plants with two large grassland datasets. Mycorrhizal responsiveness was measured for 68 taxa from the Northern Plains, and data for 95 taxa from the Central Plains were included. Nineteen percent of taxa from the Northern Plains had greater total biomass with mycorrhizas while 61% of taxa from the Central Plains responded positively. For the Northern Plains taxa, measurable effects often depended on the response variable (i.e., total biomass, shoot biomass, and root mass ratio) suggesting varied resource allocation strategies when roots are colonized by arbuscular mycorrhizal fungi. In both datasets, invasive status was nonrandomly distributed on the phylogeny. Invasive taxa were mainly from two clades, that is, Poaceae and Asteraceae families. In contrast, mycorrhizal responsiveness was randomly distributed over the phylogeny for taxa from the Northern Plains, but nonrandomly distributed for taxa from the Central Plains. After controlling for phylogenetic similarity, we found no evidence that invasive taxa responded differently to mycorrhizas than other taxa. Although it is possible that mycorrhizal responsiveness contributes to invasiveness in particular species, we find no evidence that invasiveness in general is associated with the degree of mycorrhizal responsiveness. However, mycorrhizal responsiveness among species grown under common conditions was highly variable, and more work is needed to determine the causes of this variation.

AimPlant species continue to be moved outside of their native range by human activities. Here, we aim to determine whether, once introduced, plants assimilate into native communities or whether they aggregate, thus forming mosaics of native‐ and alien‐rich communities. Alien species might aggregate in their non‐native range owing to shared habitat preferences, such as their tendency to establish in high‐biomass, species‐poor areas.LocationTwenty‐two herbaceous grasslands in 14 countries, mainly in the temperate zone.Time period2012?2016.Major taxa studiedPlants.MethodsWe used a globally coordinated survey. Within this survey, we found 46 plant species, predominantly from Eurasia, for which we had co‐occurrence data in their native and non‐native ranges. We tested for differences in co‐occurrence patterns of 46 species between their native (home) and non‐native (away) range. We also tested whether species had similar habitat preferences, by testing for differences in total biomass and species richness of the patches that species occupy in their native and non‐native ranges.ResultsWe found the same species to show different patterns of association depending on whether they were in their native or non‐native range. Alien species were negatively associated with native species; instead, they aggregated with other alien species in species‐poor, high‐biomass communities in their non‐native range compared with their native range.Main conclusionsThe strong differences between the native (home) and non‐native (away) range in species co‐occurrence patterns are evidence that the way in which species associate with resident communities in their non‐native range is not species dependent, but is instead a property of being away from their native range. These results thus highlight that species might undergo important ecological changes when introduced away from their native range. Overall, we show origin‐dependent associations that result in novel communities, in which alien‐rich patches exist within a mosaic of native‐dominated communities. Fil: Stotz, Gisela C.. University of Alberta; Canadá Fil: Cahill Jr, James F.. University of Alberta; Canadá Fil: Bennett, Jonathan A.. University of Alberta; Canadá Fil: Carlyle, Cameron N.. University of Alberta; Canadá Fil: Bork, Edward W.. University of Alberta; Canadá Fil: Askarizadeh, Diana. University of Tehran; Israel Fil: Bartha, Sandor. Centre for Ecological Research; Hungría Fil: Beierkuhnlein, Carl. University of Bayreuth; Alemania Fil: Boldgiv, Bazartseren. National University of Mongolia; Mongolia Fil: Brown, Leslie. University of South Africa; Sudáfrica Fil: Cabido, Marcelo Ruben. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto Multidisciplinario de Biología Vegetal. Universidad Nacional de Córdoba. Facultad de Ciencias Exactas Físicas y Naturales. Instituto Multidisciplinario de Biología Vegetal; Argentina Fil: Campetella, Giandiego. Universita Degli Di Camerino; Italia Fil: Chelli, Stefano. Universita Degli Di Camerino; Italia Fil: Cohen, Ofer. Universitat Tel Aviv; Israel Fil: Díaz, Sandra Myrna. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto Multidisciplinario de Biología Vegetal. Universidad Nacional de Córdoba. Facultad de Ciencias Exactas Físicas y Naturales. Instituto Multidisciplinario de Biología Vegetal; Argentina Fil: Enrico, Lucas. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto Multidisciplinario de Biología Vegetal. Universidad Nacional de Córdoba. Facultad de Ciencias Exactas Físicas y Naturales. Instituto Multidisciplinario de Biología Vegetal; Argentina Fil: Ensing, David. Queens University; Canadá Fil: Erdenetsetseg, Batdelger. National University of Mongolia; Mongolia Fil: Fidelis, Alessandra. Universidade Estadual Paulista Julio de Mesquita Filho; Brasil Fil: Garris, Heath W.. Covenant College; Estados Unidos Fil: Henry, Hugh A. L.. Western Ontario University; Canadá Fil: Jentsch, Anke. University of Bayreuth; Alemania Fil: Hassan, Mohammad. Islamic Azad University; Irán Fil: Koorem, Kadri. University of Tartu; Estonia Fil: Manning, Peter. Senckenberg Biodiversity and Climate Research Centre; Alemania Fil: Mitchell, Randall. University of Akron; Estados Unidos Fil: Moora, Mari. University of Tartu; Estonia Fil: Overbeck, Gerhard E.. Universidade Federal do Rio Grande do Sul; Brasil Fil: Pither, Jason. University of British Columbia; Canadá Fil: Reinhart, Kurt O.. United States Department of Agriculture ; Estados Unidos Fil: Sternberg, Marcelo. Universitat Tel Aviv; Israel Fil: Tungalag, Radnaakhand. National University of Mongolia; Mongolia Fil: Undrakhbold, Sainbileg. National University of Mongolia; Mongolia Fil: van Rooyen, Margaretha. University of Pretoria; Sudáfrica Fil: Wellstein, Camilla. Free University of Bozen; Italia Fil: Zobel, Martin. University of Tartu; Estonia Fil: Fraser, Lauchlan H.. Thompson Rivers University; Canadá

Adipose tissue inflammation and dysfunction are associated with obesity‐related insulin resistance and diabetes, but mechanisms underlying this relationship are unclear. Although senescent cells accumulate in adipose tissue of obese humans and rodents, a direct pathogenic role for these cells in the development of diabetes remains to be demonstrated. Here, we show that reducing senescent cell burden in obese mice, either by activating drug‐inducible “suicide” genes driven by the p16Ink4a promoter or by treatment with senolytic agents, alleviates metabolic and adipose tissue dysfunction. These senolytic interventions improved glucose tolerance, enhanced insulin sensitivity, lowered circulating inflammatory mediators, and promoted adipogenesis in obese mice. Elimination of senescent cells also prevented the migration of transplanted monocytes into intra‐abdominal adipose tissue and reduced the number of macrophages in this tissue. In addition, microalbuminuria, renal podocyte function, and cardiac diastolic function improved with senolytic therapy. Our results implicate cellular senescence as a causal factor in obesity‐related inflammation and metabolic derangements and show that emerging senolytic agents hold promise for treating obesity‐related metabolic dysfunction and its complications.

Soil biota and plant diversity Soil biota, including symbionts such as mycorrhizal fungi and nitrogen-fixing bacteria, as well as fungal and bacterial pathogens, affect terrestrial plant diversity and growth patterns (see the Perspective by van der Putten). Teste et al. monitored growth and survival in Australian shrubland plant species paired with soil biota from plants of the same species and from other plants that use different nutrient acquisition strategies. Plant-soil feedbacks appear to drive local plant diversity through interactions between the different types of plants and their associated soil biota. Bennett et al. studied plant-soil feedbacks in soil and seeds from 550 populations of 55 species of North American trees. Feedbacks ranged from positive to negative, depending on the type of mycorrhizal association, and were related to how densely the same species occurred in natural populations. Science , this issue p. 134 , p. 173 ; see also p. 181

Most studies on microbial phototrophic Fe(II) oxidation (photoferrotrophy) have focused on purple bacteria, but recent evidence points to the importance of green-sulfur bacteria (GSB). Their recovery from modern ferruginous environments suggests that these photoferrotrophs can offer insights into how their ancient counterparts grew in Archean oceans at the time of banded iron formation (BIF) deposition. It is unknown, however, how Fe(II) oxidation rates, cell–mineral aggregate formation, and Fe-mineralogy vary under environmental conditions reminiscent of the geological past. To address this, we studied the Fe(II)-oxidizer Chlorobium ferrooxidans KoFox, a GSB living in co-culture with the heterotrophic Geospirillum strain KoFum. We investigated the mineralogy of Fe(III) metabolic products at low/high light intensity, and in the presence of dissolved silica and/or fumarate. Silica and fumarate influenced the crystallinity and particle size of the produced Fe(III) minerals. The presence of silica also enhanced Fe(II) oxidation rates, especially at high light intensities, potentially by lowering Fe(II)-toxicity to the cells. Electron microscopic imaging showed no encrustation of either KoFox or KoFum cells with Fe(III)-minerals, though weak associations were observed suggesting co-sedimentation of Fe(III) with at least some biomass via these aggregates, which could support diagenetic Fe(III)-reduction. Given that GSB are presumably one of the most ancient photosynthetic organisms, and pre-date cyanobacteria, our findings, on the one hand, strengthen arguments for photoferrotrophic activity as a likely mechanism for BIF deposition on a predominantly anoxic early Earth, but, on the other hand, also suggest that preservation of remnants of Fe(II)-oxidizing GSB as microfossils in the rock record is unlikely.

Summary Clearing senescent cells extends healthspan in mice. Using a hypothesis‐driven bioinformatics‐based approach, we recently identified pro‐survival pathways in human senescent cells that contribute to their resistance to apoptosis. This led to identification of dasatinib (D) and quercetin (Q) as senolytics, agents that target some of these pathways and induce apoptosis preferentially in senescent cells. Among other pro‐survival regulators identified was Bcl‐xl. Here, we tested whether the Bcl‐2 family inhibitors, navitoclax (N) and TW‐37 (T), are senolytic. Like D and Q, N is senolytic in some, but not all types of senescent cells: N reduced viability of senescent human umbilical vein epithelial cells (HUVECs), IMR90 human lung fibroblasts, and murine embryonic fibroblasts (MEFs), but not human primary preadipocytes, consistent with our previous finding that Bcl‐xl siRNA is senolytic in HUVECs, but not preadipocytes. In contrast, T had little senolytic activity. N targets Bcl‐2, Bcl‐xl, and Bcl‐w, while T targets Bcl‐2, Bcl‐xl, and Mcl‐1. The combination of Bcl‐2, Bcl‐xl, and Bcl‐w siRNAs was senolytic in HUVECs and IMR90 cells, while combination of Bcl‐2, Bcl‐xl, and Mcl‐1 siRNAs was not. Susceptibility to N correlated with patterns of Bcl‐2 family member proteins in different types of human senescent cells, as has been found in predicting response of cancers to N. Thus, N is senolytic and acts in a potentially predictable cell type‐restricted manner. The hypothesis‐driven, bioinformatics‐based approach we used to discover that dasatinib (D) and quercetin (Q) are senolytic can be extended to increase the repertoire of senolytic drugs, including additional cell type‐specific senolytic agents.

The onset of the Middle Permian Emeishan Large Igneous Province (ELIP), is commonly implicated in the Guadalupian mass extinction, one of the largest Phanerozoic extinction events, yet the contribution of the ELIP to this biotic event remains unresolved because of a lack of appropriate age constraints. In this study, we examined claystone beds overlying the cherty limestone of the Maokou Formation and underlying the flood basalts of the ELIP that were emplaced around the Guadalupian-Lopingian Boundary. Integrated petrographic, mineralogical, elemental, and isotopic features indicate that the studied claystones contain significant components from mafic volcanic ash that was likely associated with the emplacement of the ELIP. Zircons from the claystones yield U Pb ages of ~262.5 Ma, which predates the subaerial eruptive phase of the ELIP (259.1–260.4 Ma), but is comparable to the J. altudaensis conodont biostratigraphic zone (~263 Ma, Middle Capitanian Stage) which is contemporaneous with the emplacement of early-stage Emeishan subaqueous pillow basalts and mafic volcaniclastics. Our data provide a crucial new constraint on the lower age limit for the onset of the ELIP, which was likely associated with violent submarine eruptions and thus could have contributed to the loss of marine fauna during the Guadalupian mass extinction.

Prior to atmospheric oxygenation, ecosystems were exposed to higher UV radiation fluxes relative to modern surface environments. Iron–silica mineral coatings have been evoked as effective UV radiation shields in early terrestrial settings. Here we test whether similar protection applied to planktonic cyanobacteria within the Archean water column. Based on experiments done under Archean seawater conditions, we report that Fe(III)–Si-rich precipitates absorb up to 70% of incoming UV-C radiation, with a reduction of, The means by which planktonic cyanobacteria were able to persist through the Archean despite high fluxes of UV radiation are unclear. Here, the authors show that Fe(III)-Si rich precipitates in the Archean photic zone could have provided early planktonic cyanobacteria an effective shield against UV-C radiation.

As a consequence of Earth's surface oxygenation, ocean geochemistry changed from ferruginous (iron(II)-rich) into more complex ferro-euxinic (iron(II)-sulphide-rich) conditions during the Paleoproterozoic. This transition must have had profound implications for the Proterozoic microbial community that existed within the ocean water and bottom sediment; in particular, iron-oxidizing bacteria likely had to compete with emerging sulphur-metabolizers. However, the nature of their coexistence and interaction remains speculative. Here, we present geochemical and microbiological data from the Arvadi Spring in the eastern Swiss Alps, a modern model habitat for ferro-euxinic transition zones in late Archean and Proterozoic oceans during high-oxygen intervals, which enables us to reconstruct the microbial community structure in respective settings for this geological era. The spring water is oxygen-saturated but still contains relatively elevated concentrations of dissolved iron(II) (17.2 +/- 2.8M) and sulphide (2.5 +/- 0.2M) with simultaneously high concentrations of sulphate (8.3 +/- 0.04mM). Solids consisting of quartz, calcite, dolomite and iron(III) oxyhydroxide minerals as well as sulphur-containing particles, presumably elemental S-0, cover the spring sediment. Cultivation-based most probable number counts revealed microaerophilic iron(II)-oxidizers and sulphide-oxidizers to represent the largest fraction of iron- and sulphur-metabolizers in the spring, coexisting with less abundant iron(III)-reducers, sulphate-reducers and phototrophic and nitrate-reducing iron(II)-oxidizers. 16S rRNA gene 454 pyrosequencing showed sulphide-oxidizing Thiothrix species to be the dominating genus, supporting the results from our cultivation-based assessment. Collectively, our results suggest that anaerobic and microaerophilic iron- and sulphur-metabolizers could have coexisted in oxygenated ferro-sulphidic transition zones of late Archean and Proterozoic oceans, where they would have sustained continuous cycling of iron and sulphur compounds.

The mechanisms underpinning the deposition of fine-grained, organic-rich sediments are still largely debated. Specifically, the impact of the interaction of clay particles with reactive, planktonic cyanobacterial cells to the sedimentary record is under studied. This interaction is a potentially major contributor to shale depositional models. Within a lab setting, the flocculation and sedimentation rates of these materials can be examined and measured in a controlled environment. Here, we detail a protocol for measuring the sedimentation rate of cyanobacterial/clay mixtures. This methodology is demonstrated through the description of two sample experiments: the first uses kaolin (a dehydrated form of kaolinite) and Synechococcus sp. PCC 7002 (a marine coccoid cyanobacteria), and the second uses kaolin and Synechocystis sp. PCC 6803 (a freshwater coccoid cyanobacteria). Cyanobacterial cultures are mixed with varying amounts of clay within a specially designed tank apparatus optimized to allow continuous, real-time video and photographic recording. The sampling procedures are detailed as well as a post-collection protocol for precise measurement of chlorophyll a from which the concentration of cyanobacterial cells remaining in suspension can be determined. Through experimental replication, a profile is constructed that displays sedimentation rate.

Aims: To reduce the inorganic fertilizers used to grow Asian vegetables (Luffa and Bitter gourds) by incorporating cover crops without compromising yield in piedmont soils of North Carolina Study Design: A split-split plot design was used in this study with two main plot treatments and four rates of fertilizer as subplot treatments with four replications. Place and Duration of Study: The study was conducted at the North Carolina AT AJEA, 5(5): 475-481, 2015; Article no.AJEA.2015.047 476 Results: Both luffa and bitter gourd yields increased with increase in rate of fertilizer. Cover crop treatment produced higher yields of luffa and bitter gourd compared to no cover crop treatment for all four fertilizer treatments. Statistical analysis has shown significantly higher yields (p=0.05) in T3 & T4 treatments for both luffa and bitter gourd. Cover crop residue incorporated in to the soil decomposed and released nitrogen which was utilized by the vegetable crops and the effect was evident in increased yields in cover crop treatment plots. Conclusion: Asian vegetables (luffa and bitter gourd) were grown in piedmont soils of North Carolina and the study showed that T3 & T4 treatments produced higher yields than all other treatments. This study provides evidence that Asian vegetables – such as luffa and bitter gourd – can be grown successfully in the piedmont region of North Carolina.

Microbialites provide some of the oldest direct evidence of life on Earth. They reached their peak during the Proterozoic and declined afterward. Their decline has been attributed to grazing and/or burrowing by metazoans, to changes in ocean chemistry, or to competition with other calcifying organisms. The freshwater microbialites at Laguna Bacalar (Mexico) provide an opportunity to better understand microbialite growth in terms of interaction between grazing organisms versus calcium carbonate precipitation. The Laguna Bacalar microbialites are described in terms of their distinct mesostructures. Stromatolites display internal lamination, attributed to the precipitation of calcite and the upward migration of cyanobacteria during periods of low sedimentation. Thrombolitic stromatolites show internal lamination in addition to internal clotting. The clotting is seen as a result of binding and/or trapping of micritic peloids by cyanobacteria and attributed to periods of high sedimentation. The carbonates in both microbialites had similar C- and O-stable–isotopic signatures, both enriched in ^(13)C relative to bivalves, suggesting photosynthetic CO_2 uptake was the trigger for carbonate precipitation. This implies that the rate of microbialite growth is largely a function of ambient carbonate saturation state, while the texture is especially dependent on accretion rates and sediment deposition on their surface. Importantly, the coexistence with grazing animals suggests no significant inhibition on microbialite growth, thereby calling into question the decline of microbialite as a result of metazoan evolution. Varying sedimentation rates are likely important in controlling the distribution of thrombolite–stromatolite packages in the geological record, given the importance of this factor at Bacalar.

Generalist pathogens can exhibit differential success on different hosts, resulting in complex host range patterns. Several factors operate to reduce realized host range relative to potential host range, particularly under field conditions. We explored factors influencing host range of the naturally occurring generalist ascomycete grass seed pathogen Pyrenophora semeniperda .W e measured potential host range in laboratory experiments at high inoculum loads with 26 grass species, including the primary host Bromus tectorum, and developed models to predict susceptibility and tolerance based on host traits, including germination speed, seed hardness, seed size, and phylogenetic relations. We also examined pathogen and host density effects on infection and mortality. All species tested were at least somewhat susceptible to the pathogen at high inoculum loads, but both infection and mortality varied widely. Species more closely related to the original host (B. tectorum) were more susceptible to infection, whereas species with slower germination were less tolerant and therefore more likely to suffer mortality. Infection and mortality were sharply reduced as inoculum load was reduced. Intermediate loads had major negative impacts on dormant B. tectorum seeds but generally minimal effects on native species. In addition, field seed bank studies determined that P. semeniperda rarely exploits native grass species as hosts. This marked reduction in realized host range relative to potential host range indicates that laboratory host range studies are potentially a poor predictor of either the current or possible future realized host range for wildland plant pathogens.

Microorganisms have been observed to oxidize Fe(II) at neutral pH under anoxic and microoxic conditions. While most of the mixotrophic nitrate-reducing Fe(II)-oxidizing bacteria become encrusted with Fe(III)-rich minerals, photoautotrophic and microaerophilic Fe(II) oxidizers avoid cell encrustation. The Fe(II) oxidation mechanisms and the reasons for encrustation remain largely unresolved. Here we used cultivation-based methods and electron microscopy to compare two previously described nitrate-reducing Fe(II) oxidizers ( Acidovorax sp. strain BoFeN1 and Pseudogulbenkiania sp. strain 2002) and two heterotrophic nitrate reducers ( Paracoccus denitrificans ATCC 19367 and P. denitrificans Pd 1222). All four strains oxidized ∼8 mM Fe(II) within 5 days in the presence of 5 mM acetate and accumulated nitrite (maximum concentrations of 0.8 to 1.0 mM) in the culture media. Iron(III) minerals, mainly goethite, formed and precipitated extracellularly in close proximity to the cell surface. Interestingly, mineral formation was also observed within the periplasm and cytoplasm; intracellular mineralization is expected to be physiologically disadvantageous, yet acetate consumption continued to be observed even at an advanced stage of Fe(II) oxidation. Extracellular polymeric substances (EPS) were detected by lectin staining with fluorescence microscopy, particularly in the presence of Fe(II), suggesting that EPS production is a response to Fe(II) toxicity or a strategy to decrease encrustation. Based on the data presented here, we propose a nitrite-driven, indirect mechanism of cell encrustation whereby nitrite forms during heterotrophic denitrification and abiotically oxidizes Fe(II). This work adds to the known assemblage of Fe(II)-oxidizing bacteria in nature and complicates our ability to delineate microbial Fe(II) oxidation in ancient microbes preserved as fossils in the geological record.

The eye lens consists of a layer of epithelial cells that overlay a series of differentiating fiber cells that upon maturation lose their mitochondria, nuclei and other organelles. Lens transparency relies on the metabolic function of mitochondria contained in the lens epithelial cells and in the immature fiber cells and the programmed degradation of mitochondria and other organelles occurring upon lens fiber cell maturation. Loss of lens mitochondrial function in the epithelium or failure to degrade mitochondria and other organelles in lens fiber cells results in lens cataract formation. To date, the mechanisms that govern the maintenance of mitochondria in the lens and the degradation of mitochondria during programmed lens fiber cell maturation have not been fully elucidated. Here, we demonstrate using electron microscopy and dual-label confocal imaging the presence of autophagic vesicles containing mitochondria in lens epithelial cells, immature lens fiber cells and during early stages of lens fiber cell differentiation. We also show that mitophagy is induced in primary lens epithelial cells upon serum starvation. These data provide evidence that autophagy occurs throughout the lens and that mitophagy functions in the lens to remove damaged mitochondria from the lens epithelium and to degrade mitochondria in the differentiating lens fiber cells for lens development. The results provide a novel mechanism for how mitochondria are maintained to preserve lens metabolic function and how mitochondria are degraded upon lens fiber cell maturation.

Eggplant is a popular vegetable consumed all over the world. Cover cropping is an efficient way of recycling nutrients and reducing inorganic fertilizer requirements to maintain the sustainability of the soil without affecting productivity and profitability. Eggplants (Solanum melongena) (Japanese varieties Hansel and Kamo) were grown in a Piedmont soil with two main treatments, cover crop (CC) and no cover crop (NC), and four sub-fertilizer treatments (T1: 0-0-0, T2: 56-28-112, T3: 84-56-168, and T4: 168-112-224 N-P-K kg/ha), using four replications. The Hansel variety eggplant yield was significantly higher than the Kamo variety. Eggplant yields from CC treatments for both varieties were significantly higher (p &lt, 0.001) than the yields from NC treatments. No significant difference was observed in the yields between T1 and T2 treatments, but the yields from T3 were significantly higher than T1 and T2 and yields from T4 were significantly higher than T3 yields. N released through mineralization of cover crop mixture ranged from 13.33 g/kg at the beginning of the growing season and increased to 18.32 g/kg at the end of the growing season. These results suggest that Japanese eggplants can be successfully grown in the Piedmont area of North Carolina in rotation with cover crops for higher yields.

The distribution of many trace metals in the oceans is controlled by biological uptake. Recently, Liu et al. (2015) demonstrated the propensity for a marine cyanobacterium to adsorb cadmium from seawater, suggesting that cell surface reactivity might also play an important role in the cycling of metals in the oceans. However, it remains unclear how variations in cyanobacterial growth rates and nutrient supply might affect the chemical properties of their cellular surfaces. In this study we used potentiometric titrations and Fourier Transform Infrared (FT-IR) spectrometry to profile the key metabolic changes and surface chemical responses of a Synechococcus strain, PCC 7002, during different growth regimes. This included testing various nitrogen (N) to phosphorous (P) ratios (both nitrogen and phosphorous dependent), nitrogen sources (nitrate, ammonium and urea) and growth stages (exponential, stationary, and death phase). FT-IR spectroscopy showed that varying the growth substrates on which Synechococcus cells were cultured resulted in differences in either the type or abundance of cellular exudates produced or a change in the cell wall components. Potentiometric titration data were modeled using three distinct proton binding sites, with resulting pKa values for cells of the various growth conditions in the ranges of 4.96–5.51 (pKa 1 ), 6.67–7.42 (pKa 2 ) and 8.13–9.95 (pKa 3 ). According to previous spectroscopic studies, these pKa ranges are consistent with carboxyl, phosphoryl, and amine groups, respectively. Comparisons between the titration data (for the cell surface) and FT-IR spectra (for the average cellular changes) generally indicate (1) that the nitrogen source is a greater determinant of ligand concentration than growth phase, and (2) that phosphorus limitation has a greater impact on Synechococcus cellular and extracellular properties than does nitrogen limitation. Taken together, these techniques indicate that nutritional quality during cell growth can noticeably influence the expression of cell surface ligands and their measurable densities. Given that cell surface charge ultimately affects metal adsorption, our results suggest that the cycling of metals by Synechococcus cells in the oceans may vary regionally.

Due to the lack of an ozone layer in the Archean, ultraviolet radiation (UVR) reached early Earth's surface almost unattenuated; as a consequence, a terrestrial biosphere in the form of biological soil crusts would have been highly susceptible to lethal doses of irradiation. However, a self-produced external screen in the form of nanoparticular Fe(III) minerals could have effectively protected those early microorganisms. In this study, we use viability studies by quantifying colony-forming units (CFUs), as well as Fe(II) oxidation and nitrate reduction rates, to show that encrustation in biogenic and abiogenic Fe(III) minerals can protect a common soil bacteria such as the nitrate-reducing Fe(II)-oxidizing microorganisms Acidovorax sp. strain BoFeN1 and strain 2AN from harmful UVC radiation. Analysis of DNA damage by quantifying cyclobutane pyrimidine dimers (CPD) confirmed the protecting effect by Fe(III) minerals. This study suggests that Fe(II)-oxidizing microorganisms, as would have grown in association with mafic and ultramafic soils/outcrops, would have been able to produce their own UV screen, enabling them to live in terrestrial habitats on early Earth.

Understanding how plant communities are organized requires uncovering the mechanism(s) regulating plant species coexistence and relative abundance. Negative soil feedbacks may affect plant communities by suppressing dominant species, causing rarity of most plants, or reducing the competitive abilities of all species. Here, three soil feedback experiments were used to differentiate the effects of soil feedbacks on mid- to late-successional and semiarid grasslands. Then I tested whether the direction and degree of soil feedback accounts for variation in relative abundance among species that coexist within each plant community. Negative soil feedbacks predominated across all species and sites and were individually discernible for 40% of plant species. Negative soil feedbacks affected rare to dominant plant species. Negative soil feedbacks, capable of having negative frequency-dependent effects, have the potential to act as a fundamental driver of species coexistence.

The negative effect of conspecific trees on seedling recruitment in temperate forests has been well documented at the population level for several common species. In 2007, we estimated the survival of 2210 recently germinated seedlings of nine tree species transplanted near conspecific and heterospecific trees, a surrogate for describing distance-dependent mortality, as part of an experiment with landscape-level replication across eight mixed-deciduous forests in the southern Appalachian Mountains of North Carolina. Forest composition was variable but they had a number of woody species in common. Prior to establishing the field experiment, we used a forest inventory database for the region to classify the recruitment patterns of tree species and formulate predictions for species. The field experiment, conducted as a drought was progressing, revealed that four of the nine species planted had variable survival around conspecifics compared with heterospecifics suggesting variation in distance-dependent mortality. Acer saccharum and Tsuga canadensis both had greater mortality near conspecifics than heterospecifics, while Fagus grandifolia and Prunus serotina showed the opposite pattern. Species classified as having greater recruitment around conspecifics, according to the forest inventory data, suffered greater overall levels of mortality in our field experiment. Possibly because of the progressing drought, none of the four species predicted to be most affected by distance-dependent sources of mortality based on the forest inventory data exhibited the predicted patterns of survival near conspecific vs. heterospecific trees in the field experiment. Furthermore, two of the four species (A. saccharum and T. canadensis) classified as being least affected by conspecific trees actually had greater survival near heterospecifics than conspecifics. Although we identified effects of canopy tree type in four of the nine comparisons, negative effects of conspecific trees were observed for only two (A. saccharum and T. canadensis) of nine species and mostly contradicted predictions based on patterns from forest inventory data. The inconsistency between patterns from the forest inventory data and from experiments indicates that there may be localized, complex interactions that make generalizations about neighbor effects on tree seedling survival difficult.

OGG1 and MSH2/MSH3 promote CAG repeat expansion at Huntington's disease (HD) locus in vivo during removal of oxidized bases from DNA. CSB, a transcription-coupled repair (TCR) protein, facilitates repair of some of the same oxidative lesions. In vitro, a knock down CSB results in a reduction of transcription-induced deletions at CAG repeat tract. To test the role of CSB in vivo, we measured intergenerational and somatic expansion of CAG tracts in HD mice lacking CSB, OGG1, or both. We provide evidence that CSB protects CAG repeats from expansion by either active reduction of the tract length during parent-child transmission, or by antagonizing the action of OGG1, which tends to promote expansion in somatic cells. These results raise a possibility that actions of transcription-coupled and base excision repair pathways lead to different outcomes at CAG tracts in vivo.

Centaurea stoebe L. subsp. micranthos is native to Eurasia and is invasive in the western portion of the US. Negative impacts of C. stoebe micranthos present in the eastern US have not been recorded. In this study, we examine the effects of C. stoebe micranthos on species diversity on an eastern grassy bald, compare the competitive abilities of plant species from eastern and western grasslands against C. stoebe micranthos, and assess the production of allelopathic compounds in an eastern population of C. stoebe micranthos. Field observations indicated that increasing C. stoebe micranthos abundance was not associated with decreasing abundance or diversity of species. In a greenhouse experiment, C. stoebe micranthos growing with plant species from an eastern grassland were smaller than C. stoebe micranthos growing with species from western grasslands, suggesting that species from the eastern grassland are more competitive against C. stoebe micranthos. We found no evidence that the eastern population of C. stoebe micranthos has allelopathic effects. While the invasion dynamics may change over time, the possibility that C. stoebe micranthos may never become invasive in the studied grassy bald should be weighed when considering control measures here and throughout the eastern US. This study illustrates that invasion dynamics can vary geographically and that land managers need relevant information to gauge an appropriate and economical response.

Canopy disturbances such as windthrow events have obvious impacts on forest structure and composition aboveground, but changes in soil microbial communities and the consequences of these changes are less understood. We characterized the densities of a soil-borne pathogenic oomycete (Pythium) and a common saprotrophic zygomycete (Mortierella) in nine pairs of forest gaps created by windthrows and adjacent forest understories. We determined the levels of Pythium necessary to cause disease by performing pathogenicity experiments using two Pythium species, a range of Pythium densities, and two common tree species (Acer rubrum and Prunus serotina) from the study sites. Three years post-disturbance, densities of Mortierella remained suppressed in soil from forest gaps compared to levels in intact forest understories while varying across sites and sampling dates. Pythium were infrequently detected likely because of soil handling effects. Expression of disease symptoms increased with increasing inoculum density for seedlings of P. serotina with each Pythium spp. having a similar effect on this species. Conversely, A. rubrum appeared resistant to the two species of Pythium. These results suggest that Pythium densities at sites where they were detected are sufficient to cause disease and possibly affect establishment of susceptible species like P. serotina. Because early seral environments have lower loads of the saprotrophic Mortierella, pathogen loads may follow a similar pattern, causing susceptible species to establish more frequently in those habitats than in late-seral forests. Forest disturbances that alter the disease landscape may provide an additional mechanism for explaining succession of temperate forests in addition to the shade-tolerance paradigm.

The quality and interpretability of the paleobiological record depends on the preservation of morphological and geochemical fossils. Siliceous microfossils and sedimentary pigments are often cornerstones in paleoecology, although the microbial and geochemical processes conducive to their preservation remain poorly constrained. We examined sediments from an alpine lake in Banff National Park (Alberta, Canada) where diatom frustules are completely dissolved within 50 years of deposition. Diatom dissolution, silica recycling, and diagenetic alteration of algal pigments were investigated, in conjunction with porewater geochemistry and microelectrode profiling of the sediment–water interface. Analysis of sediment trap material showed ~90% of biogenic silica (BSi) production is lost prior to burial. Silica flux calculations, based on dissolved silica (as H4SiO4) in pore-waters, show a further ~6% of total BSi is returned to the water column from the upper 4 cm of sediments, implying that only ~4% of total BSi is permanently archived in sediments. In situ sediment pH and O2 profiles reveal that aerobic respiration by bacteria fully consumes oxygen by a depth of 4 mm into the sediment, with associated strong pH and redox gradients. During sedimentation and early diagenesis, diatoms undergo loss of extracellular polymeric substances that coat their frustules, promoting silica dissolution and leading to the loss of the microfossil record by a depth of 3.25 cm. Sedimentary pigments similarly undergo rapid degradation, but diatom-related carotenoids persist below the depth of silica dissolution. This work provides new insights on diagenetic processes in lakes, with broad implications for the interpretation of sedimentary proxies for algal production.