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The inability to thoroughly examine diatom type material existing only in resin-mounted permanent slides is a common frustration for diatomologists. Here, we present an efficient, inexpensive, and straightforward technique to extract siliceous exoskeletons of diatoms from permanent slides prepared with commonly used mounting media. Van Heurck's slide constituting an isotype duplicate of Proschkinia bulnheimii var. belgica, an entity with an uncertain taxonomic status, was deconstructed to allow thorough examination using scanning electron microscopy. Numerous specimens of the taxon, including intact frustules and specimens with complete areola occlusions, were recovered and documented. The extracted diatom material was sufficient to prepare two scanning electron microscopy specimens and reconstruct the permanent slide. The proposed approach may help overcome many of the taxonomic bottlenecks associated with the low resolution of information provided by older diatom descriptions and permanent slide observations.

Freshwater red algae have been collected on the African continent since the early 1800s. However, the collections have been sparse and geographically restricted. The present study sought to bring t...

Worldwide the use of pesticides has increased, especially in the industry and agriculture sector even though they contain highly toxic substances. The use of pesticides has various negative effects on the aquatic ecosystem and organisms within these ecosystems. The paper aimed to assess the effects of increased concentrations of malaria vector control insecticides (Dichlorodiphenyltrichloroethane (DDT) and Deltamethrin (DTM)) on the freshwater diatom community structure using a microcosm approach as well as determine whether a mixture (DDT 1:1 Deltamethrin) exposure will have a greater influence on the diatom community when compared to single exposures of these insecticides. Diatoms were exposed to a high and low concentration (based on LC50 data for freshwater Xenopus laevis from the USEPA Ecotox database) of DDT, DTM and a mixture in lentic microcosms over a total period of 28 days. Results indicated that irrespective of exposure concentrations, DDT, DTM and a mixture had negative effects on the diatom community including functionality and vitality as these insecticides induced changes to their chloroplasts. There was an increased percentage dead cells for all exposures compared to the control, with the insecticides having a phototoxic effect on the diatom community. Exposure to the selected insecticides caused a significant decrease in some diatom metrics indicating the negative effects these insecticides have on the diatom metrics. Therefore, diatoms may prove to be useful as bio-indicators in ecotoxicology studies when assessing the effects of any insecticide exposures.

Diatoms are siliceous micro-algae and have been used with increasing frequency as bioindicators in aquatic ecosystems. Typically, European diatom indices have been modified and augmented with data on taxa endemic to and commonly found in other parts of the world. In order to further test the application of diatom indices, water quality and diatom sampling were performed in the Bloukrans River system, Eastern Cape Province of South Africa. Nine sites with contrasting water quality were sampled along the length of the river in February, May and July 2018. Multivariate statistical analysis (Canonical Correspondence Analysis) was employed to elucidate spatiotemporal differences in diatom community structure. Canonical correspondence analysis indicated that differences in diatom community assemblages were best explained by dissolved oxygen, temperature, nitrate, conductivity and phosphate. Diatom-based indices incorporated in OMNIDIA software were also applied to assess the integrity of the water quality as indicated by diatom communities. Several foreign indices (e.g. the trophic diatom index (TDI), biological diatom index (BDI)) and the South African Diatom Index (SADI) were used in the study. The SADI demonstrated that the Bloukrans River was impacted and had significant correlations with water quality variables (p

Monitoring of wetland ecosystems is crucial as these ecosystems provide numerous services and resources to both humans and the biota found therein. Wetlands are characterised by variations in inundation time and depth and therefore it is often difficult to make use of invertebrates and fish as biological indicators. Diatoms may be used for monitoring of wetland ecosystems as they are widely distributed, are microscopic with few habitat restrictions, communities are species rich and they respond rapidly to environmental changes. Very little information is available on wetland diatom communities in South Africa. Wetland ecosystems include Ramsar sites such as Lake Sibaya which faces increased forestry and rural development within the lake's catchment area. Therefore, this study aimed to determine the diatom community structure of Lake Sibaya and its response to changes in water quality. Water and diatom samples were collected from four sites in Lake Sibaya during August 2015, December 2015 and February 2016. All samples were collected and analysed according to standard methodologies. From the results it was clear that the lake had a lower diatom diversity than that described in a previous study in 1966, with Cocconeis placentula, Gomphonema sp., Epithemia adnata and Nitzschia sp. being the dominant taxa. Both the diatom community structure and measured water quality parameters showed the lake to be nutrient enriched. However, as nutrients accumulate in wetlands it is unknown whether the increased nutrients arise from anthropogenic disturbances or natural sources.

Background: Although the Kruger National Park (KNP) is a protected area, it is not exempted from anthropogenically induced impacts, which often compromise river water flow and quality. Measures of river water quality in South Africa have conventionally been based on water chemistry as well as different ecological indicator groups such as fish and macroinvertebrates. Diatoms have been shown to be useful indicators of changes in water quality resulting from pollution and land-use impacts.Objectives: To determine the applicability of diatoms for hind-casting water quality in the KNP and to compare recent diatom community composition with those from the 1980s.Methods: In this study, pH and electrical conductivity (EC) were used to evaluate temporal changes in water quality of three rivers within the KNP. Additionally, we made use of historic diatom samples from three of the five perennial rivers to evaluate if diatom communities reflected changes in water conditions between 1983 and 2015.Results: Diatom community structure was significantly different between 1983 and 2015. Diatom-based index scores (SPI) indicated an improvement in water quality for the Letaba and Olifants rivers.Conclusion: Diatoms were shown to be useful indicators of current water quality and are also useful for determining temporal changes.

The current study focuses on four species from the primarily marine diatom genus Craspedostauros that were observed growing attached to numerous sea turtles and sea turtle-associated barnacles from Croatia and South Africa. Three of the examined taxa, C. danayanus sp. nov., C. legouvelloanus sp. nov., and C. macewanii sp. nov., are described based on morphological and, whenever possible, molecular characteristics. The new taxa exhibit characters not previously observed in other members of the genus, such as the presence of more than two rows of cribrate areolae on the girdle bands, shallow perforated septa, and a complete reduction of the stauros. The fourth species, C. alatus, itself recently described from museum sea turtle specimens, is reported for the first time from loggerhead sea turtles rescued in Europe. A 3-gene phylogenetic analysis including DNA sequence data for three sea turtle-associated Craspedostauros species and other marine and epizoic diatom taxa indicated that Craspedostauros is monophyletic and sister to Achnanthes. This study, being based on a large number of samples and animal specimens analyzed and using different preservation and processing methods, provides new insights into the ecology and biogeography of the genus and sheds light on the level of intimacy and permanency in the host-epibiont interaction within the epizoic Craspedostauros species.

Petalonema alatum (Borzì ex Bornet & Flahault) Correns is a nitrogen fixing, subaerial cyanobacterium characterized by a blue-green trichome surrounded by a very broad, lamellated mucous sheath. It typically grows on dripping limestone rocks in temperate regions, but it has also been observed in some calcareous lakes and limestone springs. Although the species is known to be present in the Americas, Europe and Asia, no records could be found for its presence in Africa. In the last decade, it was sampled twice from rock surfaces in cave overhangs in the Free State Province of South Africa, representing a first record of its presence in Africa. A taxonomic description, microscope images as well as detailed geographical distributions of P. alatum are provided.

Luisa Riato was supported by a Coaltech Research Association Research Fellowship. J.C. Taylor is the recipient of South African National Research Foundation (NRF) incentive funding.

Two new freshwater species of Achnanthidium Kutzing are described from Eastern Ghats Mountain range of Peninsular India based on light and scanning electron microscopy observations. Achnanthidium initium sp. nov. belongs to the group of Achnanthidium taxa that have terminal raphe fissures curved to opposite sides of the valve. This taxon is characterized by distinctive fascia, raphe endings extending to the valve margin, lineate distal raphe endings and 2-5 linear areola per striae. Achnanthidium linannulum sp. nov. belongs to the group of Achnanthidium taxa with terminal raphe fissures curved to the same side of the valve. This species is characterized by the presence of occluded areolae near the margin, striae orientation and the weakly bent internal distal ends of the raphe. These new species are known only from their type locality, oligotrophic Masilla Waterfalls from Kolli Hills, Eastern Ghats.

Cholnoky described several new Surirella taxa from Africa and we have re-investigated this material. As many other of his contemporary authors, especially in the case of description of new African diatoms, Cholnoky did not indicate holotypes. In the present paper original materials are re-evaluated, lectotypes and a holotype are designated and also epitypes whenever it was appropriate. Taxa later transferred to Stenopterobia have not been taken into account. A short description of the seven species concerned (Surirella anassae, S. chasei, S. coei, S. oliffii, S. ostentata = Surirella ovata var. africana, S. pseudotenuis and S. pseudothienemannii) is given based on the original light microscopic descriptions. Additional morphological information based on scanning electron microscopy is added if available. The presently known ecology and distribution of the taxa is given as are other remarks, based on own observations. For each of the seven taxa Cholnoky's original drawings are presented, which were later re-drawn for publication and which are kept in the archive of the South African National Diatom Collection. The results are discussed referring to the outcome of the digitization project of African Surirellaceae (diatoms, microscopic algae) in the frame of the African Plants Initiative.

Natural lakes are rarely found in South Africa and are usually restricted to coastal regions. One of the larger coastal lakes is Lake Sibaya, which is situated in North-Eastern Kwa-Zulu Natal, a subtropical summer rainfall region. In 1966 a survey of this and other smaller lakes connected to the Lake Sibaya system was conducted and diatom samples were collected, of which three were examined by R.E.M. Archibald, and from which nine new species were described. Archibald illustrated these new taxa using line drawings; the interpretation of such illustrations for species identification is sometimes difficult. For this reason we have re-examined the type material with the aim of producing light microscope (LM) and scanning electron microscope (SEM) micrographs of the species in question. All nine taxa described and illustrated by Archibald were found again in the type slides and photographed from the holotype slides using LM. Unfortunately the preserved type material was stored in un-buffered formalin and had degraded to a point where it could no longer be used for SEM. Additional desiccated samples collected during later expeditions between 1966 and 1972 were selected, based on similarity of locality and substratum, and used to obtain SEM micrographs. Again, all taxa could be documented from material in these additional samples. Of the nine taxa described, we transferred four to more appropriate genera, as they were originally described as species of Achnanthes and Navicula. Although Archibald’s line drawings were detailed and accurate, it was necessary to document these types using LM and SEM in order to make accurate designations at generic level and to facilitate identification of these taxa if found in other localities

Background and aims – Large-celled Eunotia species from tropical central Africa are documented in order to define morphological variation within species and to describe new or poorly documented taxa.Methods – Samples were collected from the Congo River between Kisangani and Bumba in the Democratic Republic of the Congo. These samples were prepared for diatom analysis and examined according to standard methods and documented using both light and scanning electron microscopy.Key results – A single population of Eunotia zygodon is used to demonstrate the high degree of change in gross cell morphology during its life cycle, changes previously observed in cultures of this genus. Cells of this taxon from each extremity of the reproductive cycle could be, and probably often were, placed in discrete taxa during sample analysis, especially as this taxon occurs rather infrequently. We also describe Eunotia leonardii as new to science. It has an undulate valve margin and is closely related to Eunotia serra and Eunotia georgii but differs in respect to overall cell size and the structure of the terminal raphe endings. The bi-undulate Eunotia papilio var. africana is raised to the rank of species and named Eunotia fuseyi as it is clearly a discrete taxon from E. papilio s. str.

Water quality and algal populations in the Vaal River Barrage Reservoir have been monitored extensively for many decades, because of its importance as a water source for the most densely populated area in South Africa. Although Aulacoseira granulata (Ehrenberg) Simonsen is frequently found and at it times dominates algal assemblages in the Barrage, Aulacoseira ambigua (F.Meister) Tuji & D.M.Williams has never before been recorded at this locality. During a countrywide proficiency-testing scheme for algae counting, coordinated by Rand Water, spiral-shaped diatom colonies with distinctly curved cells were detected during May 2015. Upon investigation, it was found that the spiral colonies were Aulacoseira ambigua f. japonica, its presence in the fresh waters of South Africa being recorded for the first time. Since their first appearance during May 2015, colonies of Aulacoseira ambigua f. japonica have been constantly present in the surface waters of the Barrage. Their presence at this site can be linked to increasing eutrophication in the Vaal River, because the spiral form is known to prefer eutrophic conditions. Centric diatoms rarely form spiral colonies and there is some confusion in the literature as to the identity of this particular form, therefore in this paper we discuss this taxon, its nomenclature and ecological significance.Keywords: algae, curved diatom cells, phytoplankton, spiral colonies, Vaal River Barrage Reservoir

In this paper we describe Navicula nielsfogedii sp. nov., a commonly occurring diatom through central and southern Africa and distributed from the sub-tropical zones of South Africa to tropical central Africa. We have examined the material of the most closely related species described from Africa, Navicula feuerbornii f. africana Foged and suggest that this species may be conspecific with Navicula heimansioides Lange-Bertalot and to have no link to the taxon N. feuerbornii Hustedt sensu Simonsen. With reference to Navicula feuerbornii f. africana we also discuss the changes over time in diatom species concepts, what we have dubbed 'species concept drift', and the consequences this holds for accurately identifying diatom taxa. As the newly described species is widely distributed and common in some samples from tropical and subtropical Africa we conclude that it may be a useful additional indicator organism for water quality monitoring in the region.

Rivers are impacted by pollutants from anthropogenic activities such as urbanisation and agricultural practices. Whilst point source pollution has been widely studied and in some cases remediated, non-point pollutant sources remain pervasive, particularly in developing countries that lack economic and human specialist capacity. Monitoring of pollution levels in many regions is additionally challenged by a lack of robust indicators for nitrogen inputs, however, diatom community indices and analysis of variation in microphytobenthos (MBP) stable isotope analysis variations have potential. The present study investigates variations and utilities in benthic diatom indices and MPB δ15N along different river sections (n = 31) of an austral river between two seasons (wet and dry), testing for relationships with key environmental variables (physical, water and sediment), in the context of N monitoring. One hundred and eighteen diatom taxa belonging to 36 genera were identified, with physical (water flow), water (nitrate, P and total dissolved solids) and sediment (B, Ca, Cr, Na, N, P, SOM, Pb and Zn) variables correlating to one or more of the 12 diatom indices presented. In particular, Biological Diatom Index, Biological Index of Water Quality, Central Economic Community, Index of Artois-Picardie Diatom (IDAP) and Sladecek's Index were strongly explained by sediment variables, whilst Descy's Pollution Index and Schiefele and Schreiner's Index were explained by water and physical variables. Whilst MPB δ15N were within the “no impact” level in the wet and dry seasons at reference (i.e. unpolluted) sites, all sites located in agricultural or urban areas, and downstream of sewage discharges, had a wider range that encompassed increasing organic impacts (“inorganic impacts” to high “organic impacts”). Temperature and turbidity (negative), as well as dissolved oxygen, waterway width and depth (positive), significantly affected MPB δ15N, whilst effects of chemistry variables were less apparent. Overall, we found that MPB δ15N signatures were significantly correlated with Trophic Diatom Index, the Specific Pollution Sensitivity Index and the Artois-Picardie Diatom Index, suggesting the utility of diatoms and MPB δ15N in assessments of aquatic pollution. In turn, MPB δ15N values are strong indicators of N pollution across spatial and seasonal gradients. Thus, the results showed the effects of sediment variables on diatoms to be strong, indicating that sediment rather than water characteristics more strongly structure diatom communities. Thus, sediment variables should be sampled when conducting bioassessment studies.

Despite more than 150 years of diatom research in India, cymbelloid taxa have rarely been investigated when compared to the other parts of the world. A new freshwater species of Encyonema Kutzing was discovered from the mountain ranges of Peninsular India and is described based on light and scanning electron microscopy observations. This paper provides a comparison of the new taxa with morphologically similar taxa of the genus Encyonema. Encyonema keshrii, sp. nov., is characterized on the basis of distinctive morphological characters including valve and apex shape as well as striae density. Enccyonema keshrii, sp. nov., is found to be a wide spread taxon with distribution across the Eastern Ghats, Western Ghats and the Eastern Himalayas of Indian subcontinent.

A first survey was done on algae present in the Sundays River from its source to its confluence with the sea. Species found in the upstream sections of the river included indicators of good water quality, but the quality deteriorated downstream with peaks in algal abundance being ascribed to peaks in nutrient concentrations. Cyanobacteria and euglenoids were present in the upper and middle reaches of the river, but were absent downstream. Dinoflagellates became more important downstream, especially in the estuary. Dominant species, reaching high concentrations along the river, included Nitzschia frustulum, Nitzschia capitellata, Carteria klebsii, Chlorella vulgaris and Anabaena species. The presence of the diatom Eolimna comperei is a first record of its occurrence in South Africa. The Sundays River can be described as a brackish, hard water system with high nutrient concentrations in certain sections. The most important contributors to high nutrient concentrations were point sources in the vicinity of towns along the river banks, as well as diffuse sources contributing to high nitrogen concentrations in the fertile Sundays River valley. Increasing salinities were due to pollution, evaporation and agricultural activities in the valley

Summary Diatom taxa in India were first documented by Ehrenberg and subsequently many studies have focused on the Western Ghats and Himalayan mountains while other regional environments were rarely explored. In the current study, the freshwater environs of the saline Lonar Crater Lake were investigated and two new Nitzschia species have been described. Nitzschia kociolekii sp. nov. and Nitzschia tripudio sp. nov. were sampled from bird feeding ponds associated with Lonar Lake. The morphological characters of the new species are similar to N. amphibia and N. frustulum but differ in terms of striae pattern, polymorphic areolae development, fibula and stria density. In addition, larger specimens of N. williamsii, a recently described taxon from Bangalore wetlands of Peninsular India, were found in a waterfalls flowing into Lonar Lake. All three taxa are freshwater diatoms and are possibly endemic to Peninsular India.

This paper provides a description of the zooplankton and epiphytic diatom communities of permanent and temporary freshwater pans in the Mpumalanga Highveld region of South Africa. Few studies have investigated the biota of pans in this area, which is seriously threatened by mining and agricultural development. Nineteen pan sites within a 20 kmradius covering a wide range of water chemistries were sampled once for zooplankton, epiphytic diatoms and water physico-chemical data in 2009. Collected zooplankton and diatom samples were identified to species or genus level. Many of the zooplankton taxa reported in this study were not recorded in similar pan studies in South Africa and southern Africa. The study revealed a difference among the compositions of zooplankton and diatom communities between temporary pans and permanent pans. Zooplankton found exclusively in freshwater temporary pans included cladocerans (Megafenestra aurita and Scapholeberis kingi), calanoids (Mesocyclops major and Thermodiaptomus mixtus), a cyclopoid (Acanthocyclops vernalis) and a rotifer (Platyias quadricornis). Permanent pans were characterized by taxa such as cladocerans (Ceriodaphnia rigaudi and Dunhevedia crassa), a calanoid (Metadiaptomus transvaalensis), cyclopoids (Paracyclops fimbriatus and Eucyclops gibsoni) and rotifers (Brachionus dimidiatus and Brachionus plicatilis). The most commonly occurring diatom taxa in temporary pans included taxa indicative of slightly acidic to circumneutral, dystrophic and nutrient-poor waters such as Nitzschia acidoclinata, Gomphonema gracile and Eunotia bilunaris. Permanent pan assemblages were characterized by taxa typical of saline waters, including Nitzschia frustulum, Amphora veneta and Planothidium engelbrechtii. Species of the genera Pinnularia and Eunotia were almost totally absent from permanent pans.Key words: zooplankton, epiphytic diatoms, pans, wetlands, South Africa.

International audience; Contaminant-related stress on aquatic biota is difficult to assess when lethal impacts are not observed. Diatoms, by displaying deformities (teratologies) in their valves, have the potential to reflect sub-lethal responses to environmental stressors such as metals and organic compounds. For this reason, there is great interest in using diatom morphological aberrations in biomonitoring. However, the detection and mostly the quantification of teratologies is still a challenge; not all studies have succeeded in showing a relationship between the proportion of abnormal valves and contamination level along a gradient of exposure. This limitation in part reflects the loss of ecological information from diatom teratologies during analyses when all deformities are considered. The type of deformity, the severity of aberration, species proneness to deformity formation, and propagation of deformities throughout the population are key components and constraints in quantifying teratologies. Before a metric based on diatom deformities can be used as an indicator of contamination, it is important to better understand the “ecological signal” provided by this biomarker. Using the overall abundance of teratologies has proved to be an excellent tool for identifying contaminated and non-contaminated environments (presence/absence), but refining this biomonitoring approach may bring additional insights allowing for a better assessment of contamination level along a gradient. The dilemma: are all teratologies significant, equal and/or meaningful in assessing changing levels of contamination? This viewpoint article examines numerous interrogatives relative to the use of diatom teratologies in water quality monitoring, provides selected examples of differential responses to contamination, and proposes solutions that may refine our understanding and quantification of the stress. This paper highlights the logistical problems associated with accurately evaluating and interpreting teratologies and stimulates more discussion and research on the subject to enhance the sensitivity of this metric in bioassessments.

This study focused on the spring-fed upper reaches of the economically important Great Fish River with the aim of determining if diatoms could be used for biomonitoring in semi-arid conditions in southern Africa. Five sites were monitored monthly from 2010 to 2012. Of the 269 diatom taxa belonging to 51 genera identified, the dominant taxa were mostly those considered to be pollution-tolerant: Amphora pediculus, Craticula buderi, Fragilaria biceps, Nitzschia frustulum, Nitzschia paleacea, Planothidium lanceolatum and Rhopalodia gibba. A number of diatombased numerical indices were used to infer water quality, including the generic diatom index, the specific pollution sensitivity index, the biological diatom index, and percentage pollution-tolerant valves, which forms part of the UK trophic diatom index. All index scores showed the Great Fish River to be impacted, and showed significant correlations of diatom species abundance with pH, NO3-N, electrical conductivity, NH4-N and CaCO3. Analysis revealed EC and NO3-N as the main environmental drivers affecting diatom commnity composition, followed by pH and PO4-P. The percentage of diatom deformities at all sites was high, at 3.5%. Diatom indices showed the river to be impacted by decades of agricultural activity, which was confirmed by chemical water analysis. Thus diatom indices can be used for biomonitoring in semi-arid areas.Keywords: agricultural impacts, aquatic ecosystem, biomonitoring, deformed valves, epilithic diatoms, freshwater, Karoo

SUMMARY The terrestrial diatom Microcostatus schoemanii sp. nov. is described from dry soils of the Faan Meintjies Nature Reserve (North-West Province, South Africa). Microcostatus cholnokyi sp. nov. and Microcostatus angloensis sp. nov. are described from sandy soils at a colliery near the town of Kriel (Mpumalanga Province, South Africa). The morphology of these taxa is examined using both light and scanning electron microscopy and new taxa are compared with similar species. In M. schoemanii the density of the striae combined with the valve outline and the distance between the central raphe endings are the main distinguishing morphological features. M. cholnokyi is differentiated by the presence of a conopeum and the distinct structure of the microcostae. M. angloensis is similar to M. schoemanii but differentiated by the shape of the cell and the apices, the angle of striation and the distance in between the proximal raphe endings.

Abdominal and groin injuries are common problems encountered by athletes across a wide variety of sports. They range from benign but annoying, such as exercise-related transient abdominal pain (ETAP), to the activity-limiting and possibly career-ending condition of athletic hernia. This article covers ETAP, rectus abdominus injuries, osteitis pubis, athletic hernia, and abdominal/groin hernias to provide an update on the current pathophysiology and treatment of common abdominal and pelvic conditions in the athlete.

The inclusion of diatoms into the current suite of biomonitoring tools in use in South Africa, as well as the use of European and other diatom indices in South Africa, and in particular the Crocodile and West Marico water management area, is discussed. The indices, when compared to chemical analyses, proved useful in providing an indication of the quality of the investigated waters. Several widely distributed diatom species were shown to have similar ecological tolerances in South Africa when compared to Europe. Although most of the diatoms encountered in the study were cosmopolitan, several possibly endemic species were recorded. The occurrence of endemic species, not included in existing diatom indices may lead to miscalculations of diatom indices. It is concluded that although diatom indices developed in Europe and elsewhere are useful at the present to indicate water quality, a diatom index unique to South Africa including endemic species will have to be formulated.

Two new diatom taxa belonging to the genus Surirella, S. ebalensis and S. congolensis, are described from material of the Congo Basin, downstream Kisangani, DR Congo. The first taxon is a small, rather common species in the studied material; the second a somewhat larger diatom that was only sporadically observed. The morphology of both taxa is examined with light and scanning electron microscopy. The differences between the new and other closely related taxa such as S. agonaensis and S. bonsaensis, and S. takoradiensis, S. tenuissima and S. pseudotenuissima, respectively, are discussed.

Two little-known diatom taxa have been encountered in the saprobic and anthropogenically impacted waters of the Vaal River, South Africa. Eolimna archibaldii, an extremely small-celled species, is described as new to science. Navicula adamantiformis Archibald is transferred to the taxonomically-appropriate genus Navigiolum Lange-Bertalot, Cavacini, Tagliaventi and Alfinto, as no specific characters of N. adamantiformis coincide with Navicula sensu stricto.

Diatoms have become important organisms for monitoring freshwaters and their value has been recognised for cross-border water quality monitoring in the European Union. If South Africa is to include diatoms in the current suite of bioindicators, then thorough testing of diatom-based techniques is required. This paper provides guidance on methods through all stages of diatom collection, preparation and examination for the purposes of water quality assessment.African Journal of Aquatic Science 2005, 30(1): 65–75

Historical diatom records provide a means of retrospectively determining water quality and inferring ecological condition in rivers and streams. In this study we re-sampled sites originally sampled 48 years previously. We then determined the scores for the Biological Diatom Index (BDI) and the South African Diatom Index (SADI) for each dataset. The results revealed that the present day conditions in this relatively undisturbed locality were almost identical to those reflected by the samples collected half a century before. This illustrates the value of historical diatom data for the purposes of determining antecedent water quality. Keywords : diatoms, water quality, South Africa, Biological Diatom Index, South African Diatom Index

Diploneis fenestrata, a new aerophilic diatom is described from Lumangwe falls, Zambia. This novel species occurs as an epiphyte on the roots and stems of trees located within the spray zone of the falls. Its morphology was examined with both light and scanning electron microscopy. Diploneis fenestrata is distinguished from other taxa in the genus Diploneis by its prominent square openings ranging in number from 4-14 occurring within the area of the longitudinal canal only at the outer cell wall. The occurrence of these characteristic square openings found in the genus Diploneis is further discussed.

During a survey of the freshwater diatom flora of the Senegal River, an unknown Placoneis species was observed that was initially identified as Placoneis gastrum. Detailed morphological analysis using both light and scanning electron microscopy observations revealed sufficient morphological differences to separate this species as Placoneis cocquytiae sp. nov. The new species is characterized by a rather broadly lanceolate to elliptic-lanceolate valve outline with rostrate, protracted, broadly rounded apices. The central area has an irregular shape due to the shortening of several striae. An isolated pore is lacking. The new species is compared with similar Placoneis and Navicula s.l. taxa and a short biogeographical analysis based on confirmed African records is presented. So far, P. cocquytiae is also present in Zambia and Lake Tanganyika.

A study was made of the type material of Achnanthidium exiguum (Grunow) Czarnecki. This often encountered and apparently ubiquitous species was originally described as Stauroneis exilis by Kützing from the island of Trinidad and later re–named as Achnanthes exigua by Grunow. The type material for this taxon (Kützing sample 397), housed in the Van Heurck collection at the National Botanic Garden of Belgium, Meise was investigated and the ultrastructure of this taxon was documented using both LM and SEM observations. A new Antarctic taxon, formerly identified as A. exigua, was described as a new species, Achnanthidium australexiguum sp. nov. The position of both taxa within the genus Achnanthidium is briefly discussed.

An ecologically healthy Mooi River system is important for maintaining the quality of potable water of Potchefstroom and surrounding areas. However, this system is under constant threat from anthropogenic pollution arising from both agricultural and mining activities in its catchment. A survey of planktonic algal and cyanoprokaryote assemblages in Klerkskraal, Boskop and Potchefstroom reservoirs was undertaken during 1999–2000 and 2010–2011. In all three dams, total algal and cyanoprokaryote concentrations were lower during the second survey (2010–2011), suggesting an improvement in ecosystem health. However, results also show a change from a Chrysophyceae-dominated community to one dominated by Bacillariophyceae. Increased numbers of diatom species that usually occur in eutrophic impoundments (Melosira varians, Cyclotella meneghiniana and Aulacoseira granulata) indicate an increase in the trophic status of the reservoirs, especially that of Boskop Dam, a trend mirrored by increases in conductivity as well as phosphorus and ammonium concentrations in all three reservoirs. It can therefore be concluded that although the ecosystem health of the Mooi River system is currently still good, further increases in nutrients such as phosphorus can cause proliferation of problem species (detected in enrichment cultures) and a deterioration of its water quality http://www.wrc.org.za/Pages/KH_WaterSA.aspx?dt=5&L0=1&L1=4 http://www.wrc.org.za/Pages/DisplayItem.aspx?ItemID=10488&FromURL=%2fPages%2fKH_AdvancedSearch.aspx%3fdt%3d5%26ms%3d%26d%3dVolume%26e%3d39+No.+5%2c+October+2013%26start%3d1 http://dx.doi.org/10.4314/wsa.v39i5.16 http://dx.doi.org/10.4314/wsa.v39i5.16

Chemical monitoring of water resources is time-consuming and comparatively expensive and may not always provide a composite reflection of actual water quality. Biotic indices using faunal elements, such as macroinvertebrates and fish, are already in place in South Africa as part of the National Biomonitoring Programme for Aquatic Ecosystems (NBPAE). As yet periphyton communities are not included in this programme due to perceived difficulties in the application of these methods. Diatom samples were collected from 10 sites in the Vaal and Wilge Rivers for a period of one year. Diatom cells from these communities were enumerated and diatom-based indices were calculated using OMNIDIA v.3. Diatom index scores were correlated to physical and chemical water quality variables over different time periods and at different concentrations. It was found that the tested diatom indices in general have the best correlation with average chemical data for a one-month period, starting six weeks prior to biological sampling. The Biological Diatom Index showed the strongest relationship to general water quality, while the Eutrophication and Pollution Index showed the strongest relationship to dissolved inorganic phosphorus. Results of correlation analyses obtained in South Africa were comparable to those obtained in several European studies. Hence, it is concluded that diatom-based indices, if implemented in South Africa, will provide a valuable addition to South Africa’s suite of tools for the biological monitoring of water quality.

This study was undertaken to determine the present ecological state of rivers and streams in the Buffelspoort Valley Conservancy (BVC), against which later potential changes in, and impacts on, water quality could be measured. After very brief training, all field work, including site selection and sample collection, was carried out by the members of the Conservancy. All samples collected by the members of the Conservancy were of an adequate quality for analysis and yielded meaningful results. This study demonstrates that there is great potential for the use of diatoms in community monitoring programmes, mainly due to the ease and rapidity with which samples can be collected. The participation of communities is also vital in gaining a more complete overview of the diatom species occurring in South Africa.Keywords: community participation; diatoms; river monitoring; water qualityAfrican Journal of Aquatic Science 2009, 34(2): 173–182

Gomphonema grande sp. nov. is described from a single sample collected from the Congo River Basin, Tropical Africa. The morphological features of the new species are described and documented through light microscopy and scanning electron microscopy analyses. Gomphonema grande differs from most species of the genus by its relatively large size, robust valves, unique shape, and distinctive suite of valve features such as a labium-shaped internal stigma opening. Further discussion on the diverse nature of certain characters in the genus Gomphonema is presented.

Three data sources (physico-chemistry, bio-monitoring and eco-toxicology) are currently used in South Africa to establish environmental water quality conditions. Environmental water quality in turn is key information required for the “ecological reserve determination” of river reaches. Bio-monitoring in South Africa has been limited in recent times mostly to the use of the SASS procedure which relies on invertebrates only. This paper describes the re-introduction of a diatom-based water quality assessment as an added-value bio-monitoring tool. A specific example is discussed citing the response of diatom assemblages to diffuse pollution from acid mine drainage and how effective diatoms are as indicators of ecological integrity and river recovery measured downstream of the area of impact. The advantages of applying this bio-monitoring technique over other biological measures are presented in the context of technological advances in rapid image processing, species identification and software applications of diatom-based water quality indices. The valuable records of the diatom assemblages of the past, held in the South African Diatom Collection at the CSIR (KwaZulu-Natal), can now be accessed and interpreted as historical environmental water quality reference points for several rivers in South Africa.

Water quality assessment protocols based on the use of diatoms are now well developed and their value substantiated at an international level. The use of diatoms is not designed or intended to be a “rapid” technology. The detailed level of information generated from the procedure outweighs perceived disadvantages of the additional time required for sample preparation and analysis to species level. The method is applicable across a wide range of aquatic ecosystem types, namely freshwater, brackish, and estuarine, and is inclusive of both lentic and lotic environments, wetlands and their associated damp, marginal and littoral zones. Details provided by diatom assemblages support palaeoecological investigations, historical reconstruction of water quality and the determination of prevailing water quality conditions. Deliberate determination of responses to management strategies or impacts arising from a variety of anthropogenic activities can be achieved via the simple expedient of retrieving living material from introduced artificial substrates. Previous studies in South Africa and elsewhere have shown that on a site-by-site basis the use of diatoms provides a fine level of diagnostic resolution of the causes underlying changes in water quality and environmental condition. The South African Diatom Collection (“the Collection”), a repository of diatom specimens and records that spans the length and breadth of this country, contains an as-yet unutilised wealth of ecological and taxonomic information. More importantly, the historical data analysis records provide an insight into water quality conditions prevailing 40 to 50 years ago – in many cases prior to the “development” of many of our rivers, streams and wetlands. The real value of its existence underpins the great potential for renewed attention to the value of diatom-based approaches to water quality assessments. In addition, the Collection provides a ready-made foundation on which a locally relevant tool for water quality assessment may be established to augment the current use of invertebrate indicators. It is now appropriate that the full potential of the use of diatoms in water quality assessments, and the information contained in the Collection, be developed and utilised for water quality assessment in South Africa. Key words: diatoms, water quality, Cholnoky, Archibald, biotic indices Water SA Vol.31(1) 2005: 41-46

In this paper we describe Actinellopsis murphyi gen. et spec. nov. a small heteropolar and dorsiventral diatom from a seep habitat in Zambia. This novel taxon has the chief distinguishing characteristic, along with its cell symmetry, of having the raphe positioned wholly in the valve face and not extending onto the mantle. It is further placed within the Peroniaceae as it possesses a straight raphe on the valve face and rimoportulae, and the frustules are heteropolar with regard to the length of the raphe. We also transfer the fossil diatom Actinella giraffensis to Actinellopsis as the morphological characteristics of this taxon are consistent with those of the generitype.

Anatoliy Levanets and Leon van Rensburg 2010, AndCork Publishers, Potchefstroom, South Africa Soft cover, 134 pages ISBN 978-0-620-48118-2; price R50.00 (South Africa), US$15.00 (International); prices include postage Obtainable from 20868421@nwu.ac.za or levanets@mail.ru; electronic copy available on request

South Africa has a long legacy of diatom research. The eminent diatomist Dr BJ Cholnoky spent much of his working life examining and enumerating diatom communities found in Southern Africa. Most if not all of Cholnoky's collected diatom material in the form of mounted material on glass slides accompanied by diatom analysis sheets is stored in the South African Diatom Collection currently housed at the CSIR in Durban. As Cholnoky only employed enumeration methods yielding a margin of error of 2% or less, Cholnoky's results should provide an accurate reflection of the structure of the diatom communities that he examined. It is the aim of the present study to demonstrate the value of these historical diatom analyses for inferring past water quality conditions using the diatom-based index method. Data for the Jukskei-Crocodile River system were obtained from the South African Diatom Collection for the period 1956/1957. The nomenclature of the diatoms listed on Cholnoky's data sheets was modernised and the data then entered into OMNIDIA v3.1. Diatom index scores generated from OMNIDIA v3.1 were in general in agreement with Cholnoky's own assessment of water quality (especially with reference to organic pollution). It is concluded that the diatom analysis records housed in the South African Diatom Collection constitute a valuable resource for the assessment of past conditions of rivers and streams.. Water SA Vol. 31 (2) 2005: pp.237-246

Rivers, streams and associated habitats have been sampled for diatoms in the relatively understudied Congo and Zambezi sister basins. The primary purpose of the sampling effort was to collect samples for biological monitoring purposes and the establishment of a diatom-based monitoring programme. However, a large number of possibly endemic and novel taxa have been encountered in this region making the application of diatom-based indices at a species level difficult. In this paper we describe a new species of Stenopterobia from the Ntumbachushi Falls in the Luapula Province of Zambia. This taxon is closely related to Stenopterobia delicatissima but chiefly differentiated by a lower number of striae, a well-defined unornamented lanceolate axial area and shortened ribs which do not fuse with the fenestrae. This taxon also shows some similarity to Stenopterobia delicatissima var. ghanaensis but the valves are consistently narrower.

The applicability of a European numerical diatom index, the Specific Pollution sensitivity Index (SPI), was tested in a river system where the SPI scores were compared both to chemical water quality and to scores yielded using a macro-invertebrate index of riverine health namely the South African Scoring System (SASS 5). This investigation showed that the SPI reflects certain elements of water quality with a high degree of accuracy. Due to the broad species base of SPI, few problems were encountered when using this system in the Southern Hemisphere. The conclusion is that SPI or a similar diatom index will provide a valuable addition to the suite of biomonitoring tools currently in use in South Africa. WaterSA Vol.30 (3) 2004: 325-332