1. RNA-sequencing reveals altered skeletal muscle contraction, E3 ligases, autophagy, apoptosis, and chaperone expression in patients with critical illness myopathy
- Author
-
Monica Llano-Diez, Yu Bai, Haruka Okamoto, Jesper Gromada, Wen Fury, and Lars Larsson
- Subjects
Male ,0301 basic medicine ,Critical Illness Myopathy ,lcsh:Diseases of the musculoskeletal system ,Muscle Proteins ,Apoptosis ,0302 clinical medicine ,Gene expression ,Orthopedics and Sports Medicine ,Aged, 80 and over ,Muscle Weakness ,biology ,Calpain ,RNA sequencing ,Middle Aged ,Muscle atrophy ,Muscular Atrophy ,medicine.anatomical_structure ,Female ,medicine.symptom ,Muscle Contraction ,Muscle contraction ,Adult ,medicine.medical_specialty ,Critical Illness ,Ubiquitin-Protein Ligases ,Mechanical loading ,Critical illness myopathy ,03 medical and health sciences ,Muscular Diseases ,Internal medicine ,Autophagy ,medicine ,Humans ,Intensive care unit ,Muscle, Skeletal ,Myopathy ,Molecular Biology ,Aged ,Sequence Analysis, RNA ,business.industry ,Research ,Skeletal muscle ,Cell Biology ,030104 developmental biology ,Endocrinology ,Skeletal muscle transcriptomics ,biology.protein ,lcsh:RC925-935 ,Transcriptome ,business ,030217 neurology & neurosurgery ,Molecular Chaperones - Abstract
Background Critical illness myopathy (CIM) is associated with severe skeletal muscle wasting and impaired function in intensive care unit (ICU) patients. The mechanisms underlying CIM remain incompletely understood. To elucidate the biological activities occurring at the transcriptional level in the skeletal muscle of ICU patients with CIM, the gene expression profiles, potential upstream regulators, and enrichment pathways were characterized using RNA sequencing (RNA-seq). We also compared the skeletal muscle gene signatures in ICU patients with CIM and genes perturbed by mechanical loading in one leg of the ICU patients, with an aim of reducing the loss of muscle function. Methods RNA-seq was used to assess gene expression changes in tibialis anterior skeletal muscle samples from seven critically ill, immobilized, and mechanically ventilated ICU patients with CIM and matched control subjects. We also examined skeletal muscle gene expression for both legs of six ICU patients with CIM, where one leg was mechanically loaded for 10 h/day for an average of 9 days. Results In total, 6257 of 17,221 detected genes were differentially expressed (84% upregulated; p
- Published
- 2019
- Full Text
- View/download PDF