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Long-term studies of mountain lions (Puma concolor) in Southern California have documented persistent small population sizes and the lowest genetic variation of any mountain lion population, except for the Federally endangered mountain lion subspecies, the Florida panther (Puma concolor coryi). There is overwhelming molecular evidence supporting inbreeding and low genetic diversity in these Southern California populations but there is a lack of phenotypical evidence of inbreeding depression. The primary goal of this study was to assess male mountain lions, in Southern California, for teratospermia (>60% abnormal sperm production), one of the first signs of inbreeding depression in mountain lions that are associated with decreased reproduction and population decline. From December 2019 to December 2020, we surveyed mountain lions during live captures, after mortality events, and in images collected from camera traps in the following populations: Santa Monica Mountains, Santa Susana Mountains, Santa Ana Mountains, and the Eastern Peninsular Range. Mountain lions were sampled for known physical abnormalities associated with inbreeding depression such as teratospermia, cryptorchidism, and distal tail kinks. For teratospermia, we extracted testes from five males post-mortem to assess sperm morphology. Epididymal sperm evaluations revealed all males were teratospermic. Across all samples, on average, 93% of observed spermatozoa were abnormal. We physically examined 32 mountain lions (males and females) for distal tail kinks, and we observed one individual affected. We examined 15 male mountain lions for cryptorchidism, and we observed one unilaterally cryptorchid male and one male with testes that differed significantly in size, likely reflecting asynchronous migration of the testes during puberty. Further, we identified three other animals in camera-trap images that had distal tail kinks, for a total of four. In conclusion, from December 2019 to December 2020, we identified nine individuals exhibiting physical signs of inbreeding depression. These reproductive and physical signs of inbreeding depression in Southern California mountain lions increase the urgency of conservation efforts in the region.

Wildlife strongly alter behaviour in response to human disturbance; however, fundamental questions remain regarding the influence of human infrastructure and activity on animal movement. The Covid‐19 pandemic created a natural experiment providing an opportunity to evaluate wildlife movement during a period of greatly reduced human activity. Speculation in scientific reviews and the media suggested that wildlife might be increasing movement and colonizing urban landscapes during pandemic slowdowns. However, theory predicts that animals should move and use space as efficiently as possible, suggesting that movement might actually be reduced relative to decreased human activity. We quantified space use, movement, and resource‐selection of 12 GPS‐collared mountain lions (eight females, four males) occupying parklands in greater Los Angeles during the Spring 2020 California stay‐at‐home order when human activity was far below normal. We also tested the hypothesis that reduced traffic on Los Angeles area roadways increased permeability of these barriers to animal movement. Contrary to expectations that wildlife roamed more widely during pandemic shutdowns, resident mountain lions used smaller areas and moved shorter distances relative to their historical behaviour in greater Los Angeles. They also relaxed avoidance of anthropogenic landscape features such as trails and development, which likely facilitated increased travelling efficiency. However, there was no detectable change in road‐crossing, despite reduced traffic volume. Our results support the theoretical prediction that animals maximize movement efficiency and suggest that carnivores incur energetic costs while avoiding humans. While mountain lions may restrict movement at the landscape level relative to barriers, they appear to increase distances moved at finer scales when avoiding human activity – highlighting the scale‐dependent nature of animal responses to human disturbance. Avoiding humans can reduce direct mortality of large carnivores and is often suggested to be an important mechanism promoting coexistence in shared landscapes. However, energetic costs incurred by increased movement and space‐use while avoiding human activity may have important consequences for population viability, predator–prey interactions, community structure, and human–wildlife conflict. Management providing sufficient wild prey and education regarding best practices for protection of domestic animals are important for conserving large carnivores in human‐dominated landscapes.

Fragmentation of wildlife populations is increasing on a global scale and understanding current population genetic structure, genetic diversity, and genetic connectivity is key to informing wildlife management and conservation. We genotyped 992 pumas (Puma concolor) at 42 previously developed microsatellite loci and identified 10 genetic populations throughout the states of California and Nevada, USA. Although some genetic populations had large effective population sizes, others were small and inbred. Genetic diversity was extremely variable (heterozygosity, uHe = 0.33–0.53), with some populations nearly as low as an endangered subspecies, the Florida Panther (P. c. coryi, uHe = 0.24). Specifically, pumas in the Sierra Nevada were genetically diverse and formed the largest genetic source population in the region. In contrast, coastal and southern populations surrounded by urbanization had low genetic diversity, fragmented gene flow, and tended to be genetic sinks. The strong population genetic structuring of pumas across California (FST = 0.05–0.39) is vastly different than other genetic studies in less-urbanized states, including our analysis in Nevada, where pumas had few barriers to gene flow and weak population differentiation. Our results have far-reaching conservation and management implications for pumas and indicate large-scale fragmentation in one of North America’s most biodiverse and rapidly-urbanizing regions.

Pumas are the most widely distributed felid in the Western Hemisphere. Increasingly, however, human persecution and habitat loss are isolating puma populations. To explore the genomic consequences of this isolation, we assemble a draft puma genome and a geographically broad panel of resequenced individuals. We estimate that the lineage leading to present-day North American pumas diverged from South American lineages 300–100 thousand years ago. We find signatures of close inbreeding in geographically isolated North American populations, but also that tracts of homozygosity are rarely shared among these populations, suggesting that assisted gene flow would restore local genetic diversity. The genome of a Florida panther descended from translocated Central American individuals has long tracts of homozygosity despite recent outbreeding. This suggests that while translocations may introduce diversity, sustaining diversity in small and isolated populations will require either repeated translocations or restoration of landscape connectivity. Our approach provides a framework for genome-wide analyses that can be applied to the management of similarly small and isolated populations., Pumas are experiencing increased isolation as human persecution and habitat loss fragment the populations of this once widespread species. Here, the authors estimate the genomic consequences of this isolation by analyzing the genomes of ten pumas from across North and South America.

Extinction risk is elevated in small, isolated populations due to demographic and genetic interactions. Therefore, it is critical to model these processes realistically in population viability analyses (PVA) to inform local management and contribute to a greater understanding of mechanisms within the extinction vortex. We conducted PVA's for two small mountain lion populations isolated by urbanization in southern California to predict population growth, extinction probability, and loss of genetic diversity with empirical data. Specifically, we (1) provide the first PVA for isolated mountain lions in the Santa Ana Mountains (SAM) that considers both demographic and genetic risk factors and (2) test the hypothesis that variation in abundance and mortality between the SAM and Santa Monica Mountains (SMM) result in differences in population growth, loss of heterozygosity, and extinction probability. Our models predicted 16-21% probability of local extinction in the SAM due purely to demographic processes over 50 yr with current low levels or no immigration. Our models also predicted that genetic diversity will further erode in the SAM such that concern regarding inbreeding depression is warranted unless gene flow is increased, and that if inbreeding depression occurs, rapid local extinction will be highly likely. Dynamics of the two populations were broadly similar, but they also exhibited differences driven by larger population size and higher mortality in the SAM. Density-independent scenarios predicted a rapidly increasing population in the SMM, whereas growth potential did not differ from a stable trend in the SAM. Demographic extinction probability and loss of heterozygosity were greater in the SMM for density-dependent scenarios without immigration. However, higher levels of immigration had stronger, positive influences on both demographic viability and retention of genetic diversity in the SMM driven by lower abundance and higher adult survival. Our results elucidate demographic and genetic threats to small populations within the extinction vortex, and how these vary relative to demographic structure. Importantly, simulating seemingly attainable increases in connectivity was sufficient to greatly reduce extinction probability. Our work highlights that conservation of large carnivores is achievable within urbanized landscapes, but requires land protection, connectivity, and strategies to promote coexistence with humans.

Understanding natural and human-caused mortality for top predators persisting in human-dominated landscapes is critical for conserving their populations. We estimated survival and cause-specific mortality rates and investigated factors influencing mortality risk of mountain lions by radio-tracking 58 individuals (33 males, 25 females) across the highly fragmented landscape in greater Los Angeles, California from 2002 to 2019. Mortality risk did not differ strongly between subadults (annual survival [ŝ] = 0.68, SE = 0.08) and adults (ŝ = 0.81, SE = 0.04). However, the different age-classes were subjected to mortality risks from different sources as subadults were more likely to be killed by conspecifics, whereas adults were more likely to die from human-caused mortality. Male subadults were frequently killed by territorial adult males in the isolated Santa Monica Mountains, mortality that may be exacerbated by substantial anthropogenic barriers to dispersal in this landscape. We also tracked kittens tagged at natal dens in the Santa Monica Mountains and estimated survival to independence to be 0.63 (SE = 0.13). Higher mortality from anthropogenic causes for adults, whose survival has the greatest influence on population growth and extinction probability for mountain lions, highlights the importance of mitigation strategies to reduce human-caused mortality. Our work provides novel information about patterns of survival and mortality of mountain lions from the most urbanized landscape occupied by large carnivores in North America.

Understanding population and individual-level behavioral responses of large carnivores to human disturbance is important for conserving top predators in fragmented landscapes. However, previous research has not investigated resource selection at predation sites of mountain lions in highly urbanized areas. We quantified selection of natural and anthropogenic landscape features by mountain lions at sites where they consumed their primary prey, mule deer (Odocoileus hemionus), in and adjacent to urban, suburban, and rural areas in greater Los Angeles. We documented intersexual and individual-level variation in the environmental conditions present at mule deer feeding sites relative to their availability across home ranges. Males selected riparian woodlands and areas closer to water more than females, whereas females selected developed areas marginally more than males. Females fed on mule deer closer to developed areas and farther from riparian woodlands than expected based on the availability of these features across their home ranges. We suggest that mortality risk for females and their offspring associated with encounters with males may have influenced the different resource selection patterns between sexes. Males appeared to select mule deer feeding sites mainly in response to natural landscape features, while females may have made kills closer to developed areas in part because these are alternative sites where deer are abundant. Individual mountain lions of both sexes selected developed areas more strongly within home ranges where development occurred less frequently. Thus, areas near development may represent a trade-off for mountain lions such that they may benefit from foraging near development because of abundant prey, but as the landscape becomes highly urbanized these benefits may be outweighed by human disturbance.

Implantation of radiotransmitters in juvenile carnivores allows researchers to study little-known life stages. In the field, we successfully implanted 7 mountain lion (Puma concolor) kittens from 2 litters in the Santa Monica Mountains (Los Angeles and Ventura Co., CA), 1 in 2004 and 1 in 2010, with intraperitoneal very high frequency radiotransmitters. We used Global Positioning System location data downloaded from their mothers' collars to locate the dens in their absence, and we hand-captured the kittens at 3–4 weeks of age. The implant surgery proceeded without complication and the mothers returned promptly afterward. The transmitters allowed us to track these young mountain lions for 13–17 months, from neonates to subadults. Upon necropsy of 3 of the individuals as subadults, the implants appeared to have had no negative impacts on the animals. Implantable radiotransmitters provided a safe and effective method for following young mountain lions. © 2012 The Wildlife Society.

Author(s): Moriarty, Joanne Gale; Riley, Seth P. D.; Serieys, Laurel E.; Sikich, Jeff A.; Schoonmaker, Cathy M.; Poppenga, Robert H. | Abstract: A 15-year study of carnivores in an urban landscape in southern California has revealed a high incidence of exposure of non-target wildlife to anticoagulant rodenticides (ARs). All carnivore species studied, including mountain lions, coyotes, bobcats, and gray foxes, have tested positive for exposure to the toxicants. Anticoagulant residues have been detected in post-mortem liver samples at a rate of 83-93% of individuals tested, for coyotes, bobcats, and mountain lions, the three species for which we have extensive sampling. We have also documented mortalities caused directly by exposure to ARs in all four species, particularly in the canids. In both felid species, we found a positive correlation between AR exposure and mange disease, specifically notoedric mange. The incidence of fatal mange infection in bobcats has been at epizootic levels since 2002 in our study area, and more recently outbreaks of the disease have been documented in several other populations in California, all apparently (where testing has been done) in association with exposure to ARs. There are no previously reported instances of epizootics of notoedric mange in any wild felid population. Carnivore exposure to these toxicants appears to be largely secondary (or tertiary, as may be the case in mountain lions) through consumption of their natural prey. In our most recent work, we have evaluated AR exposure of carnivore prey species, including rodents and lagomorphs. We have documented exposure in ground squirrels and woodrats, both of which are regularly consumed by gray foxes, coyotes, and bobcats. Overall, we have found widespread exposure of non-target wildlife to these toxicants, with potentially significant consequences for some species.