1. Chemoproteomic, biochemical and pharmacological approaches in the discovery of inhibitors targeting human α/β-hydrolase domain containing 11 (ABHD11)
- Author
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Jarmo T. Laitinen, Steffi Goffart, Tapio Nevalainen, Jayendra Z. Patel, Dina Navia-Paldanius, Tuomo Laitinen, Juha R. Savinainen, Hermina Jakupović, Tiina Jääskeläinen, Sanna Pasonen-Seppänen, and Miriam López Navarro
- Subjects
Models, Molecular ,Proteomics ,0301 basic medicine ,Serine Proteinase Inhibitors ,Stereochemistry ,Pharmaceutical Science ,Biology ,Esterase ,Amidase ,Chemical library ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Thioesterase ,Fatty acid amide hydrolase ,Cell Line, Tumor ,Drug Discovery ,Hydrolase ,Animals ,Humans ,chemistry.chemical_classification ,Brain ,Mitochondria ,Mice, Inbred C57BL ,Monoacylglycerol lipase ,HEK293 Cells ,030104 developmental biology ,Enzyme ,chemistry ,Biochemistry ,030220 oncology & carcinogenesis ,Arylformamidase ,Female ,Thiolester Hydrolases ,Serine Proteases - Abstract
ABHD11 (α/β-hydrolase domain containing 11) is a non-annotated enzyme belonging to the family of metabolic serine hydrolases (mSHs). Its natural substrates and products are unknown. Using competitive activity-based protein profiling (ABPP) to identify novel inhibitors of human (h)ABHD11, three compounds from our chemical library exhibited low nanomolar potency towards hABHD11. Competitive ABPP of various proteomes revealed fatty acid amide hydrolase (FAAH) as the sole off-target among the mSHs. Our fluorescent activity assays designed for natural lipase substrates revealed no activity of hABHD11 towards mono- or diacylglycerols. A broader profiling using para-nitrophenyl (pNP)-linked substrates indicated no amidase/protease, phosphatase, sulfatase, phospholipase C or phosphodiesterase activity. Instead, hABHD11 readily utilized para-nitrophenyl butyrate (pNPC4), indicating lipase/esterase-type activity that could be exploited in inhibitor discovery. Additionally, a homology model was created based on the crystal structure of bacterial esterase YbfF. In contrast to YbfF, which reportedly hydrolyze long-chain acyl-CoA, hABHD11 did not utilize oleoyl-CoA or arachidonoyl-CoA. In conclusion, the present study reports the discovery of potent hABHD11 inhibitors with good selectivity among mSHs. We developed substrate-based activity assays for hABHD11 that could be further exploited in inhibitor discovery and created the first homology-based hABHD11 model, offering initial insights into the active site of this poorly characterized enzyme.
- Published
- 2016
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