1. Review of Methodological Approaches to Human Milk Small Extracellular Vesicle Proteomics
- Author
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Jean-François Beaulieu, Emanuela Ferretti, Jamie Kraft, Illimar Altosaar, Brett Vahkal, and Minyoung Chung
- Subjects
0301 basic medicine ,Isolation procedures ,Computational biology ,Review ,exosomes ,Biology ,Proteomics ,Microbiology ,Biochemistry ,Extracellular vesicles ,Protein detection ,03 medical and health sciences ,0302 clinical medicine ,proteomics ,Humans ,Data-independent acquisition ,Molecular Biology ,mass spectrometry ,Milk, Human ,Computational Biology ,Reproducibility of Results ,food and beverages ,human milk ,Extracellular vesicle ,Milk Proteins ,QR1-502 ,Microvesicles ,030104 developmental biology ,030220 oncology & carcinogenesis ,Proteome ,extracellular vesicles ,Ultracentrifugation - Abstract
Proteomics can map extracellular vesicles (EVs), including exosomes, across disease states between organisms and cell types. Due to the diverse origin and cargo of EVs, tailoring methodological and analytical techniques can support the reproducibility of results. Proteomics scans are sensitive to in-sample contaminants, which can be retained during EV isolation procedures. Contaminants can also arise from the biological origin of exosomes, such as the lipid-rich environment in human milk. Human milk (HM) EVs and exosomes are emerging as a research interest in health and disease, though the experimental characterization and functional assays remain varied. Past studies of HM EV proteomes have used data-dependent acquisition methods for protein detection, however, improvements in data independent acquisition could allow for previously undetected EV proteins to be identified by mass spectrometry. Depending on the research question, only a specific population of proteins can be compared and measured using isotope and other labelling techniques. In this review, we summarize published HM EV proteomics protocols and suggest a methodological workflow with the end-goal of effective and reproducible analysis of human milk EV proteomes.
- Published
- 2021