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Purpose Individuals with cerebellar ataxia (CA) caused by cerebellar degeneration exhibit larger reactive compensatory responses to unexpected auditory feedback perturbations than neurobiologically typical speakers, suggesting they may rely more on feedback control during speech. We test this hypothesis by examining variability in unaltered speech. Previous studies of typical speakers have demonstrated a reduction in formant variability (centering) observed during the initial phase of vowel production from vowel onset to vowel midpoint. Centering is hypothesized to reflect feedback-based corrections for self-produced variability and thus may provide a behavioral assay of feedback control in unperturbed speech in the same manner as the compensatory response does for feedback perturbations. Method To comprehensively compare centering in individuals with CA and controls, we examine centering in two vowels (/i/ and /ɛ/) under two contexts (isolated words and connected speech). As a control, we examine speech produced both with and without noise to mask auditory feedback. Results Individuals with CA do not show increased centering compared to age-matched controls, regardless of vowel, context, or masking. Contrary to previous results in neurobiologically typical speakers, centering was not affected by the presence of masking noise in either group. Conclusions The similar magnitude of centering seen with and without masking noise questions whether centering is driven by auditory feedback. However, if centering is at least partially driven by auditory/somatosensory feedback, these results indicate that the larger compensatory response to altered auditory feedback observed in individuals with CA may not reflect typical motor control processes during normal, unaltered speech production.

Effect of geraniin extracted from sugar maple (Acer saccharum) leaves on the viability of the phytopathogen Xanthomonas campestris pv. vitians was evaluated with the SYTOX Green nucleic acid stain, penetrating only compromised membranes, and plate counts. In parallel, structural changes of treated bacteria were examined in transmission electron microscopy (TEM). Based on SYTOX Green and plate counts, geraniin at the minimum bactericidal concentration (3.125 mg/ml) increased mortality after 45 min by 37% and 62%, respectively, when compared with controls. According to observations in TEM, geraniin caused morphological alterations of these rod-shaped bacteria, including degradation of their envelopes, as also suggested by the incorporation of SYTOX. These alterations were often accompanied by cytoplasm leakage and the formation of more pronounced whitish areas in the cytoplasm similar to vacuolization. Moreover, multi-membranous and/or –wall systems were at times formed in the treated bacteria. The presence of some extracellular electron-dense material was frequently noted around the treated bacteria. The matrix surrounding control bacteria tended to disappear after geraniin treatment. This study highlights for the first time the effect of geraniin on bacterial ultrastructure, thus contributing to a better understanding of the mechanism by which this molecule exerts antibacterial activity.

Exotic prey fishes that have high thiaminase levels are associated with a thiamine deficiency and reduced fitness in many salmonids. If sensitivity to low thiamine availability differs among the three Atlantic salmon (Salmo salar) populations targeted for reintroduction into Lake Ontario, this could substantially influence their performance. We quantified the effects of a low-thiamine diet and a control diet on tissue thiamine concentrations, survival, growth rate, and reproductive traits (sperm and egg quality) in Atlantic salmon from the three candidate source populations. Fish that consumed the low-thiamine diet had comparable growth rates but lower survival and lower muscle thiamine concentrations (26 nmol·g–1) than control fish (34 nmol·g–1). Sperm count, velocity, motility, and longevity did not differ based on diet. Embryo survival was lower for females fed the low-thiamine diet, and the low-thiamine diet was associated with significantly lower egg thiamine concentrations (11 versus 17 nmol·g–1). The effects of the low-thiamine diet did not differ among the tested populations, which suggests that source population selection is unlikely to fully overcome this potential challenge for re-establishing wild populations.

Mercury is found in Arctic marine mammals that are important in the diet of northern Indigenous peoples. The objectives of the present long‐term study, spanning a 45‐yr period, were to 1) investigate the temporal trends of total mercury (THg; muscle and liver) and selenium (Se; liver) in ringed seals (Pusa hispida) from different regions of the Canadian Arctic; and 2) examine possible relationships with age, diet, and climate parameters such as air temperature, precipitation, climatic indices, and ice‐coverage. Ringed seals were collected by hunters in northern communities in the Beaufort Sea, Central Arctic, Eastern Baffin Island, Hudson Bay, and Ungava/Nunatsiavut regions (Canada) between 1972 and 2017. Mercury levels did not change through time in seal liver, but THg levels in muscle decreased in seals from Hudson Bay (−0.91%/yr) and Ungava/Nunatsiavut (−1.30%/yr). Carbon stable isotope values in seal muscle decreased significantly through time in 4 regions. Selenium‐to‐THg ratios were found to be >1 for all years and regions. Variation partitioning analyses across regions indicated that THg trends in seals were mostly explained by age (7.3–21.7%), climate parameters (3.5–12.5%), and diet (up to 9%); climate indices (i.e., Arctic and North Atlantic Oscillations, Pacific/North American pattern) explained the majority of the climate portion. The THg levels had a positive relationship with Arctic Oscillation for multiple regions. Associations of THg with air temperature, total precipitation, and sea‐ice coverage, as well as with North Atlantic Oscillation and Pacific/North American pattern were found to vary with tissue type and geographical area. Environ Toxicol Chem 2020;39:2462–2474. © 2020 Her Majesty the Queen in Right of Canada. Environmental Toxicology and Chemistry published by Wiley Periodicals LLC on behalf of SETAC. Reproduced with the permission of the Minister of Fisheries and Oceans Canada., Total mercury and selenium concentrations were evaluated through time (1970s–2017) in ringed seals from the Canadian Arctic. Associations between concentrations of trace metal in tissues, age and diet of seals as well as climate parameters were also investigated.

The bay anchovy Anchoa mitchilli is the most abundant fish in Chesapeake Bay (USA) and is a vital link between plankton and piscivores within the trophic structure of this large estuarine ecosystem. Baywide distributions and abundances of bay anchovy eggs and larvae, and larval growth, were analyzed in a 5 yr program to evaluate temporal and spatial variability based on research surveys in the 1995-1999 spawning seasons. Effects of environmental variability and abundance of zooplankton that serve as prey for larval bay anchovy were analyzed. In the years of these surveys, 97.6% of eggs and 98.8% of larvae occurred in the polyhaline lower bay. Median egg and larval abundances differed more than 10-fold for surveys conducted in the 5 yr and were highest in the lower bay. Within years, median larval abundance (ind. m-2) in the lower bay was generally 1-2 orders of magnitude higher than upper-bay abundance. Salinity, temperature, and dissolved oxygen explained 12% of the spatial and temporal variability in egg abundances and accounted for 27% of the variability in larval abundances. The mean, baywide growth rate for larvae over the 5 yr period was 0.75 ± 0.01 mm d-1, and was best explained by zooplankton concentration and feeding incidence. Among years, mean growth rates ranged from 0.68 (in 1999) to 0.81 (in 1998) mm d-1 and were fastest in the upper bay. We identified environmental factors, especially salinity, that contributed to broadscale variability in egg and larval production.

Identifying early gene expression responses to hypoxia (i.e., low dissolved oxygen) as a tool to assess the degree of exposure to this stressor is crucial for salmonids, because they are increasingly exposed to hypoxic stress due to anthropogenic habitat change, e.g., global warming, excessive nutrient loading, and persistent algal blooms. Our goal was to discover and validate gill gene expression biomarkers specific to the hypoxia response in salmonids across multi-stressor conditions. Gill tissue was collected from 24 freshwater juvenile Chinook salmon (Oncorhynchus tshawytscha), held in normoxia [dissolved oxygen (DO) > 8 mg L−1] and hypoxia (DO = 4□5 mg L−1) in 10 and 18°C temperatures for up to six days. RNA-sequencing (RNA-seq) was then used to discover 240 differentially expressed genes between hypoxic and normoxic conditions, but not affected by temperature. The most significantly differentially expressed genes had functional roles in the cell cycle and suppression of cell proliferation associated with hypoxic conditions. The most significant genes (n = 30) were selected for real-time qPCR assay development. These assays demonstrated a strong correlation (r = 0.88; p < 0.001) between the expression values from RNA-seq and the fold changes from qPCR. Further, qPCR of the 30 candidate hypoxia biomarkers was applied to an additional 322 Chinook salmon exposed to hypoxic and normoxic conditions to reveal the top biomarkers to define hypoxic stress. Multivariate analyses revealed that smolt stage, water salinity, and morbidity status were relevant factors to consider with the expression of these genes in relation to hypoxic stress. These hypoxia candidate genes will be put into application screening Chinook salmon to determine the identity of stressors impacting the fish.

Aims Extensive knowledge of perennial forage root systems is essential, given their critical role in below-ground C input. Methods Root length and diameter were quantified periodically from 2016 to 2018 with minirhizotrons in a field experiment with three forage management systems: mixture of timothy (Phleum pratense L.) and tall fescue (Festuca arundinacea Schreb.) fertilized with (i) dairy cattle slurry or (ii) calcic ammonium nitrate, and (iii) mixture of timothy, tall fescue, and alfalfa (Medicago sativa L.) without N fertilization. Root biomass was measured yearly by coring. Results Management systems with the two fertilization sources did not differ in root elongation, but the management system with alfalfa resulted in a slower root elongation after the first defoliation and a lower root mortality in the fall. Root length turnover was greater in the topsoil with dairy cattle slurry than with calcic ammonium nitrate. Fine roots dominated the surface soil and coarse roots the deeper soil layers. Conclusions Root growth and mortality were more contrasted between systems that differed by the presence of alfalfa than by fertilizer source. As many root characteristics are drivers of soil C storage, the choice of perennial species in mixtures appears as a key management factor for sustainable farming systems.

Benzotriazole ultraviolet-stabilizers (BZT-UVs) are commonly used as additives to protect from light-induced degradation in a variety of consumer goods. Despite their widespread presence in aquatic ecosystems, information on the effects of these compounds remains largely unknown. The objectives of the present study were to evaluate the chronic effects of 2 BZT-UVs alone and in a mixture, 2-(2H-benzotriazol-2-yl)-4,6-bis(1-methyl-1-phenylethyl)phenol (UV-234) and 2-(2H-benzotriazol-2-yl)-4,6-di-tert-pentylphenol (UV-328), in juvenile rainbow trout (Oncorhynchus mykiss) chronically exposed (for 28 d) through the diet. Chemical analyses of livers from exposed trout suggested liver accumulation and potential metabolism of the 2 compounds. Hepatic RNA-sequencing analyses revealed specific effects of each compound on gene transcription profiles; UV-234 affected mainly genes involved in cellular metabolism, whereas UV-328 induced the transcription of ribosomal proteins and downregulated genes involved in immune responses. Both compounds regulated iron homeostasis genes in an opposite manner. The mixture of both BZT-UVs did not produce significant evidence of additive or synergistic effects. Environ Toxicol Chem 2020;39:852-862. © 2020 Her Majesty the Queen in Right of Canada. Environmental Toxicology and Chemistry © 2020 SETAC.

IntroductionCFTR modulators triple combo-therapy Elexacaftor/Tezacaftor/Ivacaftor (ETI) has proven to clinically benefit homozygous and heterozygous F508del patients. As a result, an increasing number of pregnancies is expected. Studies of the potential impact of these modulators on the development of the foetus are mandatory.MaterialsWe used the early mouse embryonic lung organ culture model to analyse ex vivo the lung branching process and the relative expression of Fgf10, Fgfr2IIIb, Shh, and Hhip development regulator genes in different conditions: standard culture medium, treatment with ETI or with Forskolin ± Inh172. Development of lung branching and distal bud caliber were evaluated in lung explants from heterozygous F508del Cftrtm1Eur/+ and control Cftrtm1Eur+/+ (WT) mouse embryos at E12.5 during pseudo-glandular stage.ResultsExposure to ETI of the Cftrtm1Eur/+ and WT lung explants induced a significant decrease in lung branching after 48h culture and the percentage of terminal bud dilations was significantly increased. These results were recapitulated by cAMP-dependent CFTR continuous activation by Forskolin and reversed by addition of Inh172.ETI induced a significant decrease in Fgf10, Fgfr2IIIb, Shh and Hhip expression in lung explants of both E12.5 Cftrtm1Eur/+ and WT embryos treated with ETI for 72h.ConclusionOur results provide evidence that the triple association Elexacaftor/Tezacaftor/Ivacaftor alters lung branching morphogenesis of WT and heterozygous F508del mouse embryos during the pseudo-glandular stage. Those results argue for a close monitoring of pregnancies in patients treated with these drugs.Plain LanguageIntroductionThe triple combo-therapy Elexacaftor/Tezacaftor/Ivacaftor (ETI) improves homozygous and heterozygous F508del patients. As a result, an increasing number of pregnancies is expected. Studies of this treatment on the development of the foetus are lacking. We incubated lungs of murine foetus not carrying CFTR mutation or F508del heterozygous. We show that ETI induces significant defect of lung development and the formation of cysts. These results are at least partly due to CFTR activation. Those results argue for a close monitoring of pregnancies in patients treated with these drugs.

A daily consumption of cranberry juice (CJ) is linked to many beneficial health effects due to its richness in polyphenols but could also awake some intestinal discomforts due to its organic acid content and possibly lead to intestinal inflammation. Additionally, the impact of such a juice on the gut microbiota is still unknown. Thus, this study aimed to determine the impacts of a daily consumption of CJ and its successive deacidification on the intestinal inflammation and on the gut microbiota in mice. Four deacidified CJs (DCJs) (deacidification rates of 0, 40, 60, and 80%) were produced by electrodialysis with bipolar membrane (EDBM) and administered to C57BL/6J mice for four weeks, while the diet (CHOW) and the water were ad libitum. Different parameters were measured to determine intestinal inflammation when the gut microbiota was profiled. Treatment with a 0% DCJ did not induce intestinal inflammation but increased the gut microbiota diversity and induced a modulation of its functions in comparison with control (water). The effect of the removal of the organic acid content of CJ on the decrease of intestinal inflammation could not be observed. However, deacidification by EDBM of CJ induced an additional increase, in comparison with a 0% DCJ, in the Lachnospiraceae family which have beneficial effects and functions associated with protection of the intestine: the lower the organic acid content, the more bacteria of the Lachnospiraceae family and functions having a positive impact on the gut microbiota.

Municipal wastewater treatment plant (WWTP) effluents are significant sources of organic and inorganic pollutants to aquatic ecosystems. Several studies have shown that the health of aquatic organisms can be adversely impacted following exposure to these complex chemical mixtures. The objective of this study was to examine the effects of in situ exposure in the St. Lawrence River (QC, Canada) of juvenile yellow perch (Perca flavescens) to a major WWTP effluent. Perch were caged at a reference site in the St. Lawrence River and downstream of a WWTP effluent-influenced site for one, three, and six weeks. Fish kept in controlled laboratory setting were also examined at the beginning of the experiment to evaluate the potential effect of caging on fish. Liver metabolites and gill oxidative stress biomarkers as well as body condition of perch were investigated at four time points (zero, one, three, and six weeks). Nitrogen (δ15N) and carbon (δ13C) stable isotopes as well as tissue concentrations of halogenated flame retardants and trace metals were also analyzed. Results indicated that body condition of perch caged in the effluent increased after three and six weeks of exposure compared to that of reference fish. Perch caged at the WWTP effluent-influenced site also had higher muscle δ13C and slightly depleted muscle δ15N after three and six weeks of exposure, suggesting differences in sewage-derived nutrient assimilation between sites. Concentrations of Σ34 polybrominated diphenyl ether (PBDE) were 2-fold greater in perch exposed downstream of the WWTP compared to those caged at the reference site. Metal concentrations in kidney of perch after three weeks of exposure were significantly lower at the effluent-influenced site. Kidney concentrations of Cd, Cu, Se, As, Zn and Fe were, however, higher after six weeks of exposure, supporting that metal accumulation is time- and element-specific. The metabolomes of perch from the effluent-influenced and reference sites were similar, but were distinct from the laboratory control fish, suggesting a caging effect on fish. Seven liver metabolites (glucose, malate, fumarate, glutamate, creatinine, histamine, and oxypurinol) were significantly more abundant in perch from cages than in the laboratory control perch. The combination of metabolomics and physiological variables provides a powerful tool to improve our understanding of the mechanisms of action of complex environmental pollutant mixtures in wild fish.

The ringed seal is a small phocid seal that has a northern circumpolar distribu-tion. It has long been recognized that body size is variable in ringed seals, and it has been suggested that ecotypes that differ in size exist. This study explores patterns of body size (length and girth) and age-at-maturity across most of the Arctic subspecies’ range using morphometric data from 35 sites. Asymptotic lengths varied from 113 to 151 cm, with sites falling into five distinct size clus-ters (for each sex). Age-at-maturity ranged from 3.1 to 7.4 years, with sites that had early ages of sexual maturity generally having small length-at-maturity and small final body length. The sexes differed in length at some sites, but not in a consistent pattern of dimorphism. The largest ringed seals occurred in western Greenland and eastern Canada, and the smallest occurred in Alaska and the White Sea. Latitudinal trends occurred only within sites in the eastern Canadian Arctic. Girth (with length and season accounted for) was also highly variable but showed no notable spatial pattern; males tended to be more rotund than females. Genetic studies are needed, starting with the “giants” at Kangia (Greenland) and in northern Canada to determine whether they are genetically distinct ecotypes. Additional research is also needed to understand the ecological linkages that drive the significant regional size differences in ringed seals that were confirmed in this study, and also to understand their implications with respect to potential adaptation to climate change.

Polar bears (Ursus maritimus) and ringed seals (Pusa hispida) have a strong predator-prey relationship and are facing climate-associated Arctic habitat loss and harmful dietary exposure to total mercury (THg) and other pollutants. However, little is known about whether both species inhabiting the same area exhibit similar temporal patterns in Hg concentration, niche dynamics, and body fat indices. We used THg, δ13C, and δ15N values of western Hudson Bay polar bear hair (2004-2016) and ringed seal muscle samples (2003-2015) to investigate temporal trends of these variables and multidimensional niche metrics, as well as body fat indices for both species. We found a decline in THg concentration (by 3.8% per year) and δ13C (by 1.5‰) in ringed seals suggesting a change in feeding habits and carbon source use over time, whereas no significant changes occurred in polar bears. In contrast, the polar bear 3-dimensional niche size decreased by nearly half with no change in ringed seal niche size. The δ13C spacing between both species increased by approximately 1.5× suggesting different responses to annual changes in sympagic-pelagic carbon source production. Ringed seal body fat index was higher in years of earlier sea ice breakup with no change occurring in polar bears. These findings indicate that both species are responding differently to a changing environment suggesting a possible weakening of their predator-prey relationship in western Hudson Bay.

Different extracts prepared from wastes (barks, branches, needles, or leaves) of different trees (grey alder, balsam fir, American larch, red maple, sugar maple, white spruce, black spruce, jack pine, white pine, quaking aspen, sweet cherry, and northern red oak) were investigated for their potential use as antibacterial agents for the management of lettuce varnish spot and bacterial leaf spot caused by Pseudomonas cichorii (Swingle) Stapp and Xanthomonas campestris pv. vitians (Brown) Dye, respectively. Extracts were first screened for their antibacterial activities against P. cichorii and X. campestris pv. vitians using the in vitro disk diffusion assay. Based on the diameter of the inhibition zone, ethanol (95%) extract prepared from sugar maple autumn-shed leaves (SMASL) and aqueous ethanol (50%, v/v) extracts prepared from SMASL and from sugar maple green leaves showed the strongest antibacterial activities. Ethanol (95%) SMASL extract was further investigated for its efficacy to manage bacterial diseases when applied on lettuce plants grown in the greenhouse. Foliar application of ethanol (95%) SMASL extract at a concentration of 3.2 g L−1 was shown to significantly (P ≤ 0.05) reduce bacterial leaf spot severity compared with the control without causing phytotoxicity symptoms that could prevent the commercial marketing of the lettuce. Ethanol (95%) SMASL extract (1.6 and 3.2 g L−1) was also shown to significantly reduce varnish spot severity in one experiment out of two. This study identifies for the first time the possibility of exploiting SMASL to manage bacterial diseases affecting horticultural crops.

Objective: In this in vitro study we have used an RNA quantification technique, nanoString, and a conventional protein analysis technique (Western Blot) to assess the genetic and protein expression of B16 murine melanoma cells following a modest magnetic nanoparticle hyperthermia (mNPH) dose equivalent to 30 minutes @ 43°C (CEM43 30) and/or a clinically relevant 8 Gy radiation dose. Methods: Melanoma cells with mNPs(2.5 μg Fe/106 cells) were pelleted and exposed to an alternating magnetic field (AMF) to generate the targeted thermal dose. Thermal dose was accurately monitored by a fiber optic probe and automatically maintained at CEM43 30. All cells were harvested 24 hours after treatment. Results: The mNPH dose demonstrated notable elevations in the thermotolerance/immunogenic HSP70 gene and a number of chemoattractant and toll-like receptor gene pathways. The 8 Gy dose also upregulated a number of important immune and cytotoxic genetic and protein pathways. However, the mNPH/radiation combination was the most effective stimulator of a wide variety of immune and cytotoxic genes including HSP70, cancer regulating chemokines CXCL10, CXCL11, the T-cell trafficking chemokine CXCR3, innate immune activators TLR3, TLR4, the MDM2 and mTOR negative regulator of p53, the pro-apoptotic protein PUMA, and the cell death receptor Fas. Importantly a number of the genetic changes were accurately validated by protein expression changes, i.e., HSP70, p-mTOR, p-MDM2. Conclusion: These results not only show that low dose mNPH and radiation independently increase the expression of important immune and cytotoxic genes but that the effect is greatly enhanced when they are used in combination.

The objective of this study was to investigate the relationship between hygienic indicators and Salmonella contamination in poultry meat from retail markets in China. From July 2016 to December 2016, a total of 2331 samples were collected from different outlets in 20 provinces of China. All the samples were examined for aerobic plate counts, Escherichia coli and Salmonella. The Salmonella serotyping and antimicrobial susceptibility test were also performed. E. coli was found in 45.80% (1091/2331) of poultry samples. E. coli were significantly positive correlated to aerobic plate count. Salmonella was tested positive in 369 (15.83%) samples. In poultry samples, aerobic plate counts and E. coli were significantly higher for samples contaminated with Salmonella. Among 369 Salmonella isolates, a total of 73 serotypes were identified. Nine major serotypes, i.e., Salmonella Enteritidis (25.20%), Corvallis (8.40%), Typhimurium (8.13%), Kentucky (7.86%), Indiana (4.61%), Dabou (4.61%), Agona (4.34%), Rissen (3.79%) and Thompson (2.98%) accounted for 69.92% of all Salmonella isolates. 300 (81.30%) isolates were resistant to at least one antibiotic, 119 (32.25%) isolates were multi-drug resistant. Aerobic plate count and E coli may be considered as good indicators for Salmonella in poultry samples. The results indicated that Salmonella contamination in retail poultry meat in China was much higher than that in the United States and EU countries, but the contamination level was lower than that in Korea and Japan. Good agricultural practices, good manufacturing practices, and hazard analysis critical control point systems for Salmonella control in poultry production at farm, processing, and retail level should be implemented. The results are useful for risk assessment of Salmonella contamination of poultry meat in China and provide valuable information for future national control policy in China.

In 2015, five billion liters of untreated urban wastewater (UWW) were released into the St. Lawrence River (Quebec, Canada) over the course of four days in order to repair the Montreal's sewer interceptor network related to the city's primary wastewater treatment plant. The UWW discharge originated mainly from household, industrial, and hospital sources. The objective of this study was to investigate the toxicological effects of this unprecedented punctual UWW release on aquatic invertebrates to gather information that could help understand the potential impacts to the receiving environment of overflow episodes occurring during heavy rain events. Water samples were collected at four impacted and non-impacted sites during and four weeks after the release. The freshwater crustacean Daphnia magna were experimentally exposed to surface water collected from UWW-impacted sites for 13 days and analyzed for life-history endpoints and suitable biomarkers related to oxidative stress (i.e., catalase, superoxide dismutase, lipid peroxidation, and glutathione-s-transferase) and reproduction (chitinase). Results indicated that D. magna growth and reproduction were significantly increased by exposure to UWWs. These effects were correlated with an increase in chitinase activity, which is primarily controlled by reproductive hormones and involved in growth, suggesting potential impacts on these processes. Results also indicated that some UWW samples might have caused oxidative stress during the release but that it was overcome by antioxidant defenses and did not lead to cellular damage. Overall, current results contribute to a better understanding of the biological impacts of UWW to aquatic invertebrates for a better stormwater management.

Elevated concentrations of persistent organic pollutants (POPs) and emerging halogenated flame retardants (HFRs) have been reported in tissues of the endangered St. Lawrence Estuary (Canada) beluga population as well as in minke whales visiting that same feeding area. This study examined the linkages between blubber concentrations of POPs and emerging HFRs, and transcription in skin of genes involved in the regulation of thyroid and steroid axes in belugas and minke whales from the St. Lawrence Estuary. In belugas, concentrations of PCBs, OCs and hexabromobenzene (HBB) were positively correlated with the transcription of thyroid- and/or steroid-related genes, while Dec-604 CB concentrations were negatively associated with the transcription of glucocorticoid and thyroid genes. In minke whales, PBDE concentrations changed positively with Esrβ transcript levels and HBB concentrations negatively with Nr3c1 transcripts. Present results suggest that several biological functions including reproduction and energetic metabolism may represent potential targets for organohalogens in these whales.

Delisle-Houde, P, Reid, RER, Insogna, JA, Chiarlitti, NA, and Andersen, RE. Seasonal changes in physiological responses and body composition during a competitive season in male and female elite collegiate ice hockey players. J Strength Cond Res 33(8): 2162-2169, 2019-Ice hockey continually overloads athletes with limited time for recovery, which may affect several physiological responses and alter body composition. The purpose of this study was to identify changes in physiological parameters and body composition profiles over the competitive season in elite collegiate ice hockey players. Forty-four players, 24 males (age = 22.7 ± 1.3 years, height = 1.82 ± 0.6 m, and body mass = 86.87 ± 6.44 kg) and 20 females (age = 19.9 ± 1.8 years, height = 1.66 ± 0.7 m, and body mass = 68.76 ± 5.91 kg) participated in 4-minute submaximal exercise tests and body composition assessments at pre-season, mid-season, and end-season. Changes in physiological parameters and body composition were analyzed using repeated-measures analysis of covariance controlling for age. Males' postexercise blood lactate concentration decreased (p ≤ 0.05) from pre- to mid-season (9.3 vs. 6.2 mmol·L) and increased (p ≤ 0.05) from mid- to end-season (6.2 vs. 8.0 mmol·L). Heart rate increased (p ≤ 0.05) after the third and fourth minute of the submaximal test in both sexes from pre- to end-season and from mid- to end-season. Males' body fat percentage decreased (p ≤ 0.05) from mid-season (17.4 vs. 16.1%), whereas increases were observed (p ≤ 0.05) in both sexes from mid- to end-season. This study produced evidence that male and female collegiate hockey athletes' physiological responses and body composition profiles change over the season. Sport scientists working with collegiate hockey teams, may need to revise annual training programs to attenuate reductions in fitness and hopefully prevent injuries.

As one of the highly effective methods to prepare catalysts for photocatalytic reduction of CO2 into value-added chemicals, using metalloporphyrin as light-harvesting mixed ligand to modify metal-organic framework (MOF) is very valuable since it can greatly improve the prophyrin dispersibility and consequently inhibit its potential agglomeration. Herein, we employed a one-pot synthetic strategy to chemically immobilize Cu(II) tetra(4-carboxylphenyl)porphyrin (CuTCPP) into UiO-66 MOF structure through coordination mode. Meanwhile, in-situ growth of TiO2 nanoparticles onto the MOF is actualized with the generation of CuTCPP ⊂ UiO-66/TiO2 (CTU/TiO2) composites. Under Xe lamp irradiation (λ > 300 nm), the catalytic result presents that an optimal value of 31.32 μmol g−1 h−1 CO evolution amount, about 7 times higher than that of pure TiO2 was obtained through the photocatalysis. It is supposed owning to a consistent augment of light absorption derived from chemically implanted porphyrin derivative, which is simultaneously functioning with an efficacious separation of photo-induced carries given by the newly engendered composites between MOF and TiO2, an effective catalytic activity and approving recyclability of CTU/TiO2 can be achieved in the photocatalytic reduction of CO2 into CO.

Ringed seals (Phoca hispida) have been used as bioindicator species of environmental contamination in Canada since the 1970s. In the present study, seals were harvested during subsistence hunts in four regions of the Canadian Arctic: Beaufort Sea, Arctic Archipelago, Hudson Bay, and coastal Labrador. An extensive suite of persistent organic pollutants (POPs) was determined in seal blubber collected for multiple years between 1972 and 2016. Results from this long-term study indicate geographical differences in the contaminant concentrations in seals and the significant general decrease of most POPs, including polychlorinated biphenyls (PCBs), dichlorodiphenyltrichloroethane (DDT) and related compounds, chlordanes (CHL), and hexachlorocyclohexanes (HCH) over time in ringed seals. The highest decrease rates (up to −9.1%/year for α-HCH) were found in seals from the Hudson Bay region where all chemicals investigated have significantly decreased since 1986. Significant increases in concentrations of hexachlorobenzene (HCB) in seals from Labrador and β-HCH in Sachs Harbour, NT and Arctic Archipelago were observed. Site-specific and contaminant-specific associations between climate pattern (i.e., Arctic Oscillation, North Atlantic Oscillation, and Pacific/North American pattern) and mean ice-coverage (total, first-year ice, and old-ice) were found at sites with the longest time trend data (i.e., Arviat, Sachs Harbour/Ulukhaktok and Resolute Bay). Overall, results suggest that North American and international regulations have led to the long-term reduction of most POPs in Canadian Arctic ringed seals by reducing emissions from primary sources. However, other sources of legacy compounds (e.g., environmental reservoirs) as well changes in food web composition and structure in relation to climate changes could also be influencing the very slow rates of decline, or stable levels, of contaminants found in seals at some sites. Further work is warranted to discern between co-variation of climate changes and contaminant concentrations and cause-and-effect relationships.

LPS-activated macrophages require metabolic reprogramming and glucose uptake mediated by hypoxia-inducible factor (HIF)–1 α and glucose transporter 1 (Glut1) expression for proinflammatory cytokine production, especially IL-1β. This process is tightly regulated through activation of MAPK kinases, including the MEK/ERK pathway as well as several transcription factors including HIF-1α. Although MAPK kinase (MEK) 2 deficiency had no significant effect on NO, TNF-α, or IL-12 production in response to LPS challenge, MEK2-deficient murine bone marrow–derived macrophages (BMDMs) exhibited lower IL-10 production. Importantly, MEK2-deficient BMDMs exhibited a preserved ERK1/2 phosphorylation, higher HIF-1α and Glut1 levels, and substantially increased IL-1β as well as IL-6 production in response to LPS stimulation. Knockdown of HIF-1α expression via short interference RNA decreased the level of HIF-1α expression in MEK2-deficient BMDMs and decreased IL-1β production in response to LPS treatment. Furthermore, we performed gain of function experiments by overexpressing MEK2 protein in RAW264.7 cells. LPS stimulation of MEK2 overexpressed in RAW264.7 cells led to a marked decreased IL-1β production. Finally, we investigated the role of Mek1 and Mek2 double and triple mutation on ERK phosphorylation, HIF-1α expression, and IL-1β production. We found that MEK2 is the major kinase, which inversely proportionally regulates HIF-1α and IL-1β expression independent of ERK activation. Our findings demonstrate a novel regulatory function for MEK2 in response to TLR4 activation in IL-1β production through modulating HIF-1α expression.

Chiarlitti, NA, Crozier, M, Insogna, JA, Reid, RER, and Delisle-Houde, P. Longitudinal physiological and fitness evaluations in elite ice hockey: A systematic review. J Strength Cond Res 35(10): 2963-2979, 2021-Ice hockey has greatly evolved since the last review article was published more than 25 years ago. Although players still combine anaerobic and aerobic conditioning, the pace of the game has greatly increased. Players are faster, stronger, and more agile than their predecessors; however, an important emphasis is now placed on maximizing player performance for the play-offs. For the coaching staff, strength and conditioning coaches, and players, an emphasis on mitigating fitness and physiologic losses throughout the season would be beneficial, given the intimate relationship they share with on-ice performance. This systematic review of the literature outlines the current knowledge concerning longitudinal changes in relation to fitness, body composition, and physiologic parameters across an elite hockey season. The search of 4 large scientific databases (i.e., Embase, PubMed, SPORTDiscus, and Web of Science) yielded 4,049 items, which, after removing duplicates and applying inclusion and exclusion criteria, resulted in 23 published scientific articles to be included in this review. The wide span of literature (1956-2020) made inferences difficult giving the degree to which the game of ice hockey has changed; however, more recent research points to an aerobic deconditioning pattern and increased fatigue throughout the season in a specific group of elite hockey players (i.e., university athletes) while showing that ice hockey can lead to many possible histological adaptations. Ultimately, tracking, identifying, and developing methods to mitigate potential negative longitudinal changes will be imperative to influencing individual and team performance in the later parts of the season.

Several studies have established the crucial role of the extracellular signal–regulated kinase (ERK)/mitogen-activated protein kinase pathway in hematopoietic cell proliferation and differentiation. MEK1 and MEK2 phosphorylate and activate ERK1 and ERK2. However, whether MEK1 and MEK2 differentially regulate these processes is unknown. To define the function of Mek genes in the activation of the ERK pathway during hematopoiesis, we generated a mutant mouse line carrying a hematopoietic-specific deletion of the Mek1 gene function in a Mek2 null background. Inactivation of both Mek1 and Mek2 genes resulted in death shortly after birth with a severe anemia revealing the essential role of the ERK pathway in erythropoiesis. Mek1 and Mek2 functional ablation also affected lymphopoiesis and myelopoiesis. In contrast, mice that retained one functional Mek1 (1Mek1) or Mek2 (1Mek2) allele in hematopoietic cells were viable and fertile. 1Mek1 and 1Mek2 mutants showed mild signs of anemia and splenomegaly, but the half-life of their red blood cells and the response to erythropoietic stress were not altered, suggesting a certain level of Mek redundancy for sustaining functional erythropoiesis. However, subtle differences in multipotent progenitor distribution in the bone marrow were observed in 1Mek1 mice, suggesting that the two Mek genes might differentially regulate early hematopoiesis.

The Psilocybe genus is well known for the synthesis of valuable psychoactive compounds such as Psilocybin, Psilocin, Baeocystin and Aeruginascin. The ubiquity of Psilocybin synthesis in Psilocybe has been attributed to a horizontal gene transfer mechanism of a ~20Kb gene cassette. A recently published highly contiguous reference genome derived from long read single molecule sequencing has underscored interesting variation in this Psilocybin synthesis gene cassette. This reference genome has also enabled the shotgun sequencing of spores from many Psilocybe strains to better catalog the genomic diversity in the Psilocybin synthesis pathway. Here we present the de novo assembly of genomes of 81 Psilocybe genomes compared to the P.envy reference genome. Surprisingly, the genomes of Psilocybe galindoi, Psilocybe tampanensis and Psilocybe azurescens lack sequence coverage over the previously described Psilocybin synthesis pathway but do demonstrate amino acid sequence homology to an alternative pathway and may illuminate previously proposed convergent evolution of Psilocybin synthesis.

Atlantic menhaden (Brevoortia tyrannus) support the largest fishery by volume on the United States East Coast, while also playing an important role as a forage species. Managers’ and stakeholders’ increasing concerns about the impact of Atlantic menhaden harvest on ecosystem processes led to an evolution in the assessment and management of this species from a purely single-species approach to an ecosystem approach. The first coastwide stock assessment of Atlantic menhaden for management used a single-species virtual population analysis (VPA). Subsequent assessments used a forward projecting statistical catch-at-age framework that incorporated estimates of predation mortality from a multispecies VPA while analytical efforts continued toward the development of ecosystem models and explicit ecological reference points (ERPs) for Atlantic menhaden. As an interim step while ecosystem models were being developed, a series of ad hoc measures to preserve Atlantic menhaden biomass for predators were used by managers. In August 2020, the Atlantic States Marine Fisheries Commission formally adopted an ecological modeling framework as a tool to set reference points and harvest limits for the Atlantic menhaden that considers their role as a forage fish. This is the first example of a quantitative ecosystem approach to setting reference points on the United States Atlantic Coast and it represents a significant advance for forage fish management. This case study reviews the history of Atlantic menhaden stock assessments and management, outlines the progress on the current implementation of ERPs for this species, and highlights future research and management needs to improve and expand ecosystem-based fisheries management.

The global use of >3000 per- and polyfluoroalkyl substances (PFASs) has given rise to chemical regulatory action. However, limited information exists regarding current and historical emissions for the majority of PFASs under currently implemented regulations. This study employed suspect and nontarget screening to examine the temporal trends of legacy and unregulated PFASs in liver of the endangered beluga whale (Delphinapterus leucas) population from the St. Lawrence Estuary in Canada collected from 2000 to 2017. A suite of 54 PFASs were tentatively identified, and were grouped into nine structurally distinct classes. Single-hydrogenated perfluoro carboxylic acids (H-PFCAs), single-hydrogenated sulfonamides (H-Sulfonamides), as well as other select sulfonamides were detected for the first time in wildlife. Greater concentrations of the majority of PFASs were determined in newborns and juveniles than in adults, suggesting effective placental and lactational transfer of PFASs. Legacy per- and polyfluoroalkyl acids and perfluorooctane sulfonamide in beluga whale liver were found to significantly decrease in concentration between 2000 and 2017, while unregulated short-chain PFAS alternatives, H-PFCAs, and odd-chain FTCAs were found to increase over time. The implementation of suspect and nontarget screening revealed class-specific temporal trends of PFASs in SLE beluga whales, and supported continuous emissions of unregulated PFASs into the environment.

Background Modern sequencing technologies should make the assembly of the relatively small mitochondrial genomes an easy undertaking. However, few tools exist that address mitochondrial assembly directly. Results As part of the Vertebrate Genomes Project (VGP) we develop mitoVGP, a fully automated pipeline for similarity-based identification of mitochondrial reads and de novo assembly of mitochondrial genomes that incorporates both long (> 10 kbp, PacBio or Nanopore) and short (100–300 bp, Illumina) reads. Our pipeline leads to successful complete mitogenome assemblies of 100 vertebrate species of the VGP. We observe that tissue type and library size selection have considerable impact on mitogenome sequencing and assembly. Comparing our assemblies to purportedly complete reference mitogenomes based on short-read sequencing, we identify errors, missing sequences, and incomplete genes in those references, particularly in repetitive regions. Our assemblies also identify novel gene region duplications. The presence of repeats and duplications in over half of the species herein assembled indicates that their occurrence is a principle of mitochondrial structure rather than an exception, shedding new light on mitochondrial genome evolution and organization. Conclusions Our results indicate that even in the “simple” case of vertebrate mitogenomes the completeness of many currently available reference sequences can be further improved, and caution should be exercised before claiming the complete assembly of a mitogenome, particularly from short reads alone.

Some polyphenols have been reported to modulate the expression of several genes related to lipid metabolism and insulin signaling, ameliorating metabolic disorders. We investigated the potential for the polyphenols of two varieties of grumixama, the purple fruit rich in anthocyanins and the yellow fruit, both also rich in ellagitannins, to attenuate obesity-associated metabolic disorders. Mice were fed a high fat and high sucrose diet, supplemented daily with yellow and purple extracts (200 mg per kg of body weight) for eight weeks. Purple grumixama supplementation was found to decrease body weight gain, improve insulin sensitivity and glucose-induced hyperinsulinemia, and reduce hepatic triglyceride accumulation. A decrease in intrahepatic lipids in mice treated with the purple grumixama extract was associated with lipid metabolism modulation by the PPAR signaling pathway. LPL, ApoE, and LDLr were found to be down-regulated, while Acox1 and ApoB were found to be upregulated. Some of these genes were also modulated by the yellow extract. In addition, both extracts decreased oGTT and plasma LPS. The results were associated with the presence of phenolic acids and urolithins. In conclusion, most likely the anthocyanins from the purple grumixama phenolic extract is responsible for reducing obesity and insulin resistance.

Animal models of human diseases are classically fed purified diets that contain casein as the unique protein source. We show that provision of a mixed protein source mirroring that found in the western diet exacerbates diet-induced obesity and insulin resistance by potentiating hepatic mTORC1/S6K1 signaling as compared to casein alone. These effects involve alterations in gut microbiota as shown by fecal microbiota transplantation studies. The detrimental impact of the mixed protein source is also linked with early changes in microbial production of branched-chain fatty acids (BCFA) and elevated plasma and hepatic acylcarnitines, indicative of aberrant mitochondrial fatty acid oxidation. We further show that the BCFA, isobutyric and isovaleric acid, increase glucose production and activate mTORC1/S6K1 in hepatocytes. Our findings demonstrate that alteration of dietary protein source exerts a rapid and robust impact on gut microbiota and BCFA with significant consequences for the development of obesity and insulin resistance., Diet-induced changes in the microbiome have been associated with obesity. Here, using a mouse model, the authors show that a mixed protein source found in western diets exacerbates diet-induced obesity and insulin resistance by potentiating hepatic mTORC1/S6K1 signaling via microbial production of branched-chain fatty acids (BCFA).

Whole-genome sequencing projects are increasingly populating the tree of life and characterizing biodiversity1–4. Sparse taxon sampling has previously been proposed to confound phylogenetic inference5, and captures only a fraction of the genomic diversity. Here we report a substantial step towards the dense representation of avian phylogenetic and molecular diversity, by analysing 363 genomes from 92.4% of bird families—including 267 newly sequenced genomes produced for phase II of the Bird 10,000 Genomes (B10K) Project. We use this comparative genome dataset in combination with a pipeline that leverages a reference-free whole-genome alignment to identify orthologous regions in greater numbers than has previously been possible and to recognize genomic novelties in particular bird lineages. The densely sampled alignment provides a single-base-pair map of selection, has more than doubled the fraction of bases that are confidently predicted to be under conservation and reveals extensive patterns of weak selection in predominantly non-coding DNA. Our results demonstrate that increasing the diversity of genomes used in comparative studies can reveal more shared and lineage-specific variation, and improve the investigation of genomic characteristics. We anticipate that this genomic resource will offer new perspectives on evolutionary processes in cross-species comparative analyses and assist in efforts to conserve species., A dataset of the genomes of 363 species from the Bird 10,000 Genomes Project shows increased power to detect shared and lineage-specific variation, demonstrating the importance of phylogenetically diverse taxon sampling in whole-genome sequencing.

The search for bioactive compounds from enzymatic hydrolysates has increased in the last few decades. Fish by-products have been shown to be rich in these valuable molecules, for instance, herring milt is a complex matrix composed of lipids, nucleotides, minerals, and proteins. However, limited information is available on the potential health benefits of this by-product. In this context, three industrial products containing herring milt hydrolysate (HMH) were tested in both animal and cellular models to measure their effects on obesity-related metabolic disorders. Male C57Bl/6J mice were fed either a control chow diet or a high-fat high-sucrose (HFHS) diet for 8 weeks and received either the vehicle (water) or one of the three HMH products (HMH1, HMH2, and HMH3) at a dose of 208.8 mg/kg (representing 1 g/day for a human) by daily oral gavage. The impact of HMH treatments on insulin and glucose tolerance, lipid homeostasis, liver gene expression, and the gut microbiota profile was studied. In parallel, the effects of HMH on glucose uptake and inflammation were studied in L6 myocytes and J774 macrophages, respectively. In vivo, daily treatment with HMH2 and HMH3 improved early time point glycemia during the oral glucose tolerance test (OGTT) induced by the HFHS diet, without changes in weight gain and insulin secretion. Interestingly, we also observed that HMH2 consumption partially prevented a lower abundance of Lactobacillus species in the gut microbiota of HFHS diet-fed animals. In addition to this, modulations of gene expression in the liver, such as the upregulation of sucrose nonfermenting AMPK-related kinase (SNARK), were reported for the first time in mice treated with HMH products. While HMH2 and HMH3 inhibited inducible nitric oxide synthase (iNOS) induction in J774 macrophages, glucose uptake was not modified in L6 muscle cells. These results indicate that milt herring hydrolysates reduce some metabolic and inflammatory alterations in cellular and animal models, suggesting a possible novel marine ingredient to help fight against obesity-related immunometabolic disorders.

Referral to hematology for anemia is common. In paroxysmal nocturnal hemoglobinuria (PNH), cells deficient in the glycosylphosphatidyl inositol (GPI) anchor are lysed by complement. Eculizumab improves overall survival and quality of life while reducing hemolysis, transfusion requirements, and thrombosis. We evaluated the frequency of screening for PNH in patients with unexplained anemia. Key clinical features, laboratory data, and investigations were recorded for patients referred for anemia since 2010, without a specific cause found. PNH testing was done by flow cytometry. 540 patients had: anemia not yet diagnosed (NYD, n=318 (including unexplained iron deficiency, n=92; DAT-negative hemolysis, n=9)); anemia of chronic disease, n=173; and pancytopenia NYD, n=49. 82.4% had LDH testing done; 85.0% total bilirubin; 78.7% reticulocyte counts; and 40.6% haptoglobin level; 131 (24.2%) had possible hemolysis. PNH testing was done in 56 (10.4%). Those screened for PNH were more likely to have: younger age (P=0.04); a history of thrombosis (P

Modern sequencing technologies should make the assembly of the relatively small mitochondrial genomes an easy undertaking. However, few tools exist that address mitochondrial assembly directly. As part of the Vertebrate Genomes Project (VGP) we have developed mitoVGP, a fully automated pipeline for similarity-based identification of mitochondrial reads and de novo assembly of mitochondrial genomes that incorporates both long (>10 kbp, PacBio or Nanopore) and short (100-300 bp, Illumina) reads. Our pipeline led to successful complete mitogenome assemblies of 100 vertebrate species of the VGP. We have observed that tissue type and library size selection have considerable impact on mitogenome sequencing and assembly. Comparing our assemblies to purportedly complete reference mitogenomes based on short-read sequencing, we have identified errors, missing sequences, and incomplete genes in those references, particularly in repeat regions. Our assemblies have also identified novel gene region duplications, shedding new light on mitochondrial genome evolution and organization.

A tradeoff between forage acquisition and predation avoidance contributes to shape space use by herbivores. The manipulation of structural components of the habitat, such as forage and forest cover may alter this tradeoff. The idea of influencing space use of herbivores is appealing for wildlife managers that aim to locally modify herbivore densities and increase their vulnerability to hunting. We attempted to manipulate the tradeoff between forage acquisition and risk avoidance of white-tailed deer Odocoileus virginianus on Anticosti Island (Quebec, Canada) using experimental hunting fields varying in forage production (fertilized or unfertilized fields) and residual forest cover (30 or 60-m-wide forested strips between fields). In this system with high deer density, no natural predator and limited forage, fecal group surveys and camera traps demonstrated greater use of fertilized fields. Residual forest cover did not impact habitat use, suggesting that use of the experimental fields was mainly driven by the benefits of foraging compared to the costs of avoiding hunters. Deer vulnerability to hunting, however, differed with residual forest cover: hunters saw more deer per hour in fields separated by 30-m-wide forested strips compared to fields separated by 60-m-wide forested strips. That hunters did not detect the difference in deer use between fertilized and unfertilized fields suggests that deer vulnerability to hunting and deer use could be modified by different structural components of the habitat. Our results provide useful insights for wildlife managers that have to deal with conflicting goals such as maintaining hunter satisfaction with high observation rates of deer while reducing the negative impacts of high deer densities on their body condition and, on the composition and structure of forests.

Freshwater unionoid mussels have a unique life cycle involving a temporary parasitic phase. Their larvae (glochidia) attach to the gills or fins of fish hosts where they remain encysted until metamorphosis into free-living juveniles. The physiological response of fish during the critical period of glochidial attachment is not well understood, but recent work suggests that glochidia retention and survival is enhanced in stressed and cortisol-injected hosts. In this study, the early changes induced by glochidiosis were investigated for the first time at the transcriptional level. In 2 separate experiments, juvenile yellow perch Perca flavescens were inoculated with glochidia of Elliptio complanata (a host generalist) and Lampsilis radiata (a host specialist) following a standardized procedure. The transcriptional levels of 5 genes involved in the fish response to stress were assessed in the host liver and gills 24 h post-infection using quantitative real-time PCR. The number of encysted glochidia did not significantly differ between fish inoculated with E. complanata and L. radiata. Both species induced a 3-fold increase of 70 kDa heat-shock protein gene (hsp70) transcription in host liver. However, only E. complanata influenced the transcription of cortisol-regulated genes, notably glucocorticoid receptor DNA-binding factor 1 (grlf1). This gene, known to modulate tissue responsiveness to cortisol, was downregulated in infected fish compared to controls. Our findings suggest that different glochidia species interact with their fish host in distinct ways. Additional studies are required to address this hypothesis and further investigate the significance of the observed host transcriptional responses.

Blueberry consumption can prevent obesity-linked metabolic diseases, and it has been proposed that the polyphenol content of blueberries may contribute to these effects. Polyphenols have been shown to favorably impact metabolic health, but the role of specific polyphenol classes and whether the gut microbiota is linked to these effects remain unclear. We aimed to evaluate the impact of whole blueberry powder and blueberry polyphenols on the development of obesity and insulin resistance and to determine the potential role of gut microbes in these effects by using fecal microbiota transplantation (FMT). Sixty-eight C57BL/6 male mice were assigned to one of the following diets for 12 wk: balanced diet (Chow); high-fat, high-sucrose diet (HFHS); or HFHS supplemented with whole blueberry powder (BB), anthocyanidin (ANT)-rich extract, or proanthocyanidin (PAC)-rich extract. After 8 wk, mice were housed in metabolic cages, and an oral glucose tolerance test (OGTT) was performed. Sixty germ-free mice fed HFHS diet received FMT from one of the above groups biweekly for 8 wk, followed by an OGTT. PAC-treated mice were leaner than HFHS controls although they had the same energy intake and were more physically active. This observation was reproduced in germ-free mice receiving FMT from PAC-treated mice. PAC- and ANT-treated mice showed improved insulin responses during OGTT, and this finding was also reproduced in germ-free mice following FMT. These results show that blueberry PAC and ANT polyphenols can reduce diet-induced body weight and improve insulin sensitivity and that at least part of these beneficial effects are explained by modulation of the gut microbiota.

Assessing the applicability of theory to major adaptive radiations in deep time represents an extremely difficult problem in evolutionary biology. Neoaves, which includes 95% of living birds, is believed to have undergone a period of rapid diversification roughly coincident with the Cretaceous&ndash, Paleogene (K-Pg) boundary. We investigate whether basal neoavian lineages experienced an ecological release in response to ecological opportunity, as evidenced by density compensation. We estimated effective population sizes (Ne) of basal neoavian lineages by combining coalescent branch lengths (CBLs) and the numbers of generations between successive divergences. We used a modified version of Accurate Species TRee Algorithm (ASTRAL) to estimate CBLs directly from insertion&ndash, deletion (indel) data, as well as from gene trees using DNA sequence and/or indel data. We found that some divergences near the K-Pg boundary involved unexpectedly high gene tree discordance relative to the estimated number of generations between speciation events. The simplest explanation for this result is an increase in Ne, despite the caveats discussed herein. It appears that at least some early neoavian lineages, similar to the ancestor of the clade comprising doves, mesites, and sandgrouse, experienced ecological release near the time of the K-Pg mass extinction.

Background Drought stress is one of the major factors limiting wheat production globally. Improving drought tolerance is important for agriculture sustainability. Although various morphological, physiological and biochemical responses associated with drought tolerance have been documented, the molecular mechanisms and regulatory genes that are needed to improve drought tolerance in crops require further investigation. We have used a novel 4-component version (for overexpression) and a 3-component version (for underexpression) of a barley stripe mosaic virus-based (BSMV) system for functional characterization of the C2H2-type zinc finger protein TaZFP1B in wheat. These expression systems avoid the need to produce transgenic plant lines and greatly speed up functional gene characterization. Results We show that overexpression of TaZFP1B stimulates plant growth and up-regulates different oxidative stress-responsive genes under well-watered conditions. Plants that overexpress TaZFP1B are more drought tolerant at critical periods of the plant’s life cycle. Furthermore, RNA-Seq analysis revealed that plants overexpressing TaZFP1B reprogram their transcriptome, resulting in physiological and physical modifications that help wheat to grow and survive under drought stress. In contrast, plants transformed to underexpress TaZFP1B are significantly less tolerant to drought and growth is negatively affected. Conclusions This study clearly shows that the two versions of the BSMV system can be used for fast and efficient functional characterization of genes in crops. The extent of transcriptome reprogramming in plants that overexpress TaZFP1B indicates that the encoded transcription factor is a key regulator of drought tolerance in wheat.

Fibrin sheath formation around long-term indwelling central venous catheters is common and usually benign. Fibrin sheath can persist after catheter removal and rarely leads to complications. This is a report of three pediatric oncology patients that required cardiac surgery for cardiac embolization of a "ghost" catheter several years after catheter removal. One case required tricuspid valve replacement for complete tricuspid valve destruction and two had erosion through the atrial wall. The severity of these rare complications mandates follow-up of "ghost" catheters in pediatric oncology patients.

Organic matters such as cellulose are key components in municipal sewage, and its degradation consume significant aeration energy in biological process. Pre-harvesting organic particles by chemical enhanced primary treatment (CEPT) could prevent energy consumption while increase bioenergy potential in anaerobic digestion (AD). This study provides biological proof of an “substrate-acetate-methane pathway” that may result in energy positive practice in sewage treatment. When applying CEPT sludge in AD, a stable methane yield at 0.42 m3/kg VSSin was achieved. Meanwhile, the results of mass balance suggested that for biogas conversion of CEPT sewage sludge, cellulose and protein degradation played a key factor at low organic loading operation (2 gVSS/L-day, SRT = 15 days), while lipid degradation was more significant at high loading operation (3 gVSS/L-day, SRT = 20 days). Microbial analysis revealed high abundance of cellulolytic bacteria, cellulosome related genes, and methanogens; and low abundance of syntrophs, suggesting effective degradation and uptake of amorphous cellulose to acetate. An unexpected result showed that cellulosome genes were identified from two high abundance species of Methanosarcina. In line with the reduced total volatile fatty acids and propionate (to 1,200 and 600 mg/L, respectively), such cellulolytic and methanogenic synergy implies unique syntrophs bypass for bioenergy production. With the combination of CEPT sludge and AD, the net energy of sewage treatment could increase from −0.36 kWh to 0.06 kWh per cubic meter wastewater treated, including reduced energy consumption in aeration process.

The exploration of photocatalysts used in converting CO2 into applicable organic products is of significant importance for addressing the universal problems of both global warming and energy shortage. In this work, the sensitizer Cu(II) tetra(4-carboxylphenyl)porphyrin (CuTCPP) was successfully combined with hydroxylated commercial P25 (TiO2) by hydrothermal treatment (denoted as P25m). The as-prepared composite CuTCPP/P25m shows photocatalytic activity for CO2 reduction to give methane under UV-vis irradiation. The characterizations entailed in our work not only confirm the effective combination of the composite, but exhibit a stronger light absorption capability than P25m. During the photocatalytic evaluation, the photocatalytic system employing 0.5% CuTCPP/P25m (CuTCPP account for 0.5% in the total amount) engendered approximately 46 times higher methane than generated by P25m alone. This impressive amelioration can be attributed to a strengthened capability of CuTCPP/P25m in light absorption and enhanced separation efficiency of photo-induce electrons and holes.

Developing bird embryos may be affected by a number of thyroid disrupting chemicals through maternal transfer. However, thyroid disruption in developing embryos of wild birds remains largely unstudied, especially with respect to exposure to ubiquitous environmental contaminant classes including halogenated flame retardants (HFRs). The objective of the present study was to investigate responses of the hypothalamic-pituitary-thyroid (HPT) axis of developing birds that are exposed to elevated concentrations of HFRs in their environment. Ring-billed gulls (Larus delawarensis) were collected at the external pipping stage (i.e., just prior to hatching) from two sub-populations that are differentially exposed to HFRs in the St. Lawrence River (QC, Canada). Plasma levels of thyroid hormones (THs) and transcription levels of thyroid-related genes in three tissues (i.e., liver, thyroid gland and brain) were related to liver concentrations of HFRs in pipping gulls from these two colonies. Liver polybrominated diphenyl ether (PBDE) concentrations were negatively correlated with plasma total T4 and total T4/T3 in pipping ring-billed gulls. Moreover, plasma TH levels and hepatic PBDE concentrations were correlated with the transcription of genes involved in metabolism (deiodinases type 1, 2 and 3) and synthesis (sodium iodide symporter and thyroglobulin) in the thyroid gland, negative feedback loop (thyrotropin and corticotropin releasing hormones) in the brain and the pituitary and targeted action (TH receptors) in the three tissues of gulls. The present study suggested that the alteration of TH homeostasis in developing wild birds through changes in the transcription of several thyroid-related genes may be related to potential PBDE-mediated effects.

Protein concentrates were prepared from defatted barley (Hordeum vulgare L.) flour using alkaline and enzymatic treatments. Milder enzymatic treatments included (i) a bi-enzymatic method involving the use of starch-hydrolyzing enzymes, and (ii) a tri-enzymatic method using the former bi-enzymatic treatment followed by digestion with glucanase. The concentrate obtained through alkaline extraction (AI-BP) was comprised mainly of low molecular weight fractions of proteins. Bi-enzymatic treatment produced a protein concentrate with the highest protein content (49.0%), while those obtained by the tri-enzymatic treatment followed by an isoelectric precipitation step (TEI-BP) gave the highest protein recovery yield (78.3%). In both of the latter concentrates, 35 kDa B-hordeins were the major protein fraction. Divergence in secondary/tertiary structure elements (AI-BP; TEI-BP) was obtained and attributed to the difference in the protein profiles. Further characterization of protein concentrates indicated that they exhibit pseudoplastic behavior. Emulsifying capacity of concentrates was comparable to that of whey protein isolate.

Five generally recognised as safe (GRAS) salts with antimicrobial activity were investigated for their potential use as bactericides for the control of lettuce varnish spot [Pseudomonas cichorii (Swingle) Stapp]. The phytotoxicity of salts was first assessed using greenhouse and in vitro assays. Greenhouse assays revealed that salts showed different levels of phytotoxicity. Potassium sorbate, sodium benzoate, and sodium carbonate at higher concentrations caused a noticeable decrease of growth along with foliar phytotoxicity symptoms while sodium metabisulfite and sodium bicarbonate caused exclusively foliar symptoms. Based on the phytotoxic doses 5% determined in vitro, salts can be ranked in ascending order of phytotoxicity as follows: sodium bicarbonate, potassium sorbate, sodium carbonate, sodium benzoate, and sodium metabisulfite. When applied at concentrations causing mild to moderate foliar symptoms of phytotoxicity and no noticeable effect on growth, salts did not significantly affect (p ≤ 0.01) survival of P. cichorii on lettuce leaf tissue and did not significantly reduce (p ≤ 0.01) varnish spot severity. Although sodium metabisulfite was applied at concentrations higher than the minimum inhibitory concentration and minimum bactericidal concentration, it did not affect P. cichorii survival on leaf tissue.

Interactions of vanillin with barley proteins (alkaline-based & tri-enzymatic-based barley protein concentrates, AI-BP & TEI-BP) and two control proteins (pea protein concentrate, PPC; whey protein isolate, WPI) were assessed by (a) quantifying the vanillin unbound to the protein at equilibrium, (b) characterizing the structure of protein-vanillin complexes by fluorescence spectrophotometry, and (c) conducting sensory evaluation. Effects of heat- and high-pressure-treatments of proteins on these interactions were also evaluated. The interaction between vanillin and barley proteins, estimated using Klotz plots of unbound vanillin, was found to be non-cooperative, while the quenching of the protein-vanillin complex fluorescence was related to changes in protein binding site hydrophobicity upon vanillin complexation. Using unbound vanillin, native WPI showed the lowest degree of binding, while high-pressure-treated AI-BP concentrate showed the least interaction. Fluorescence spectroscopy analysis revealed the weakest vanillin interaction with heat-treated PPC, followed by heat-treated WPI. The flavor intensity perception results obtained by the sensory evaluation of high protein cookies were well correlated with those predicted by Klotz plots of unbound vanillin., while the consumers' palettes saturation results were comparable to those estimated by the fluorescence spectroscopy. Correlating analytical data with consumers’ perception contributes to the understanding of protein/flavor interactions in foods.

Monoclonal antibodies (mAbs) are the fastest growing class of biopharmaceuticals. The specific therapeutic tasks vary among different mAbs, which may include neutralization of soluble targets, activation of cytotoxic pathways, targeted drug delivery, and diagnostic imaging. The specific therapeutic goal defines which interactions of the antibody with its multiple physiological partners are most critical for function, and which ones are irrelevant or indeed detrimental. In this work, we explored the ability of the glycan chains to affect IgG1 interaction with two key receptor families, FcRn and γ-type Fc receptors, as well as the influence of glycan composition on the conformation and stability of the antibody molecule. Three different glycan-modified forms of IgG1 (fully deglycosylated, hypergalactosylated and hypersialylated) were produced and characterized alongside the unmodified mAb molecule. Biophysical measurements did not reveal any changes that would be indicative of alterations in the higher order structure or increased aggregation propensity for any of the three glycoforms compared to the unmodified mAb, although the CH2 domain was shown to have reduced thermal stability in the fully deglycosylated form. No significant changes were observed for the hypergalactosylated and hypersialylated forms of IgG1 with regards to binding to FcRn, FcγRIIA and FcγRIIIA, suggesting that neither half-life in circulation nor their ability to induce an immune response are likely to be affected by these modifications of the glycan chains. In contrast, no measurable binding was observed for the deglycosylated form of IgG1 with either FcγRIIA or FcγRIIIA, although this form of the antibody retained the ability to associate with FcRn. These highly specific patterns of attenuation of Fc receptor recognition can be exploited in the future for therapeutic purposes.

Flame retardants (FRs) are widely reported in tissues of seabirds including birds sampled from remote areas. There is evidence that FRs can disrupt the hypothalamic-pituitary-thyroid (HPT) axis in seabirds, although information is limited on thyroid-related mechanisms and effects. This study investigated the associations between concentrations of polybrominated diphenyl ethers (PBDEs) and other FRs, and changes in the HPT axis in northern fulmars (Fulmarus glacialis) from the Faroe Islands (North Atlantic). Plasma concentrations of thyroid hormones (THs), hepatic deiodinase type 1 (D1) activity, and transcription of selected TH-related genes in liver were used as markers of HPT axis changes. Liver concentrations of a certain PBDE congeners and other FRs including pentabromoethylbenzene (PBEB), dechlorane 602 (Dec-602), and dechlorane plus (DP) were associated with changes in thyroid status. Specifically, liver PBDE, PBEB and Dec-602 concentrations were associated with plasma TH levels (free thyroxine [FT4] and total triiodothyronine [TT3]). Liver DP concentrations were positively correlated with the TT4:FT4 ratios and mRNA levels of UDP-glucuronyltransferase-1, while those of PBEB were negatively associated with TT4:TT3 ratios and D1 activity. D1 activity was also positively associated with the tri-, tetra- and hexa-BDE congeners. Moreover, transcription of ABCC2, a hepatic TH transporter, was associated with certain liver PBDE concentrations. Although PBDEs and other FRs may be potential inhibitors of D1 activity, only a few of the targeted FRs had modest associations with hepatic D1 activity. Regardless, the relationships reported herein indicated that exposure to moderate levels of FRs can be associated with thyroid axis perturbation at the molecular/biochemical levels in this North Atlantic seabird species.

Non‐native species may be introduced either intentionally or unintentionally, and their impact can range from benign to highly disruptive. Non‐native salmonids were introduced into Lake Ontario, Canada, to provide recreational fishing opportunities; however, the establishment of those species has been proposed as a significant barrier to the reintroduction of native Atlantic salmon (Salmo salar) due to intense interspecific competition. In this study, we compared population differences of Atlantic salmon in transcriptome response to interspecific competition. We reared Atlantic salmon from two populations (LaHave River and Sebago Lake) with fish of each of three non‐native salmonids (Chinook salmon Oncorhynchus tshawytscha, rainbow trout O. mykiss, and brown trout S. trutta) in artificial streams. We used RNA‐seq to assess transcriptome differences between the Atlantic salmon populations and the responses of these populations to the interspecific competition treatments after 10 months of competition in the stream tanks. We found that population differences in gene expression were generally greater than the effects of interspecific competition. Interestingly, we found that the two Atlantic salmon populations exhibited similar responses to interspecific competition based on functional gene ontologies, but the specific genes within those ontologies were different. Our transcriptome analyses suggest that the most stressful competitor (as measured by the highest number of differentially expressed genes) differs between the two study populations. Our transcriptome characterization highlights the importance of source population selection for conservation applications, as organisms with different evolutionary histories can possess different transcriptional responses to the same biotic stressors. The results also indicate that generalized predictions of the response of native species to interactions with introduced species may not be appropriate without incorporating potential population‐specific response to introduced species.