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Mulberry (Morus spp.) is a cross-pollinating and highly hybridized plant of which productivity are greatly varied in different varieties. Accurate distinction among mulberry varieties and understanding of phylogenetic relationship among them would be crucial for the development of sericulture. We have analysed molecular distinction among four mulberry species and varieties cultivated in DPR Korea by using nuclear ribosomal internal transcribed spacer (ITS) sequences and inter simple sequence repeat (ISSR) markers. ITS sequences doesn’t represent a remarkable interspecific distinction among four mulberry species used in our study, suggesting that it could not be employed to identify them. ISSR analysis using 16 random primers generated 158 different markers ranging from 100 to 4000 bp in size. The results showed the inter-specific genetic variation (55.34%) was slightly higher than intra-specific genetic variation (44.66%), with comparatively low average number of migrants per generation (Nm) among populations (0.3886). Using ISSR primers selected in this study, in the future, the suitable breeding strategy might be established in raising of elite mulberry varieties on the basis of interspecific hybridization.

Makgeolli is a traditional rice wine favored by the general public in Korea. This study investigated the fermentation and sensory characteristics of using wild yeast strains for brewing makgeolli. A non-Saccharomyces cerevisiae strain was isolated from nuruk and termed Y197-13. It showed 98% similarity to Pichia anomala and had an optimal growth temperature of 25 degrees C. Makgeolli was manufactured using koji, jinju nuruk, and improved nuruk as fermentation agents. Y197-13 makgeolli brewed with koji had alcohol and solids contents of 11.1% and 13.9%, respectively. Sweet sensory characteristics were attributed to residual sugars in makgeolli with 6% alcohol. The makgeolli had a fresh sour taste and carbonated taste. Volatile component analysis showed the isoamyl alcohol, phenylethyl alcohol, isoamyl acetate, and fatty acid, including ethyl oleate and ethyl linoleate, relative peak area was higher in Y197-13 makgeolli than in makgeolli with Saccharomyces cerevisiae. These results suggest the wild yeast, Y197-13, as a candidate for brewing makgeolli.

A total of 90 finishing pigs (52 ± 1.46 kg) were randomly assigned to one of three dietary treatments as: TRT1 [CON (basal diet)], TRT2 [CON + 0.05% yeast hydrolysate (YH)], and TRT3 (CON + 0.1% YH) for an 8 wk trial. Each treatment had six replications and five (three gilts and two barrow) pigs per pen. In weeks 4 and 8, YH supplement linearly increased (P

A volatile herbal extract (VHE), consisting of 150 g/kg anethole, 15 g/kg bebaudioside A, 2.1 g/kg thymol, 2.0 g/kg eugenol and 2.3 g/kg cinnamic aldehyde, was fed to sows and their weaned offspring to evaluate its effect on the reproductive performance of sows and the growth performance of weaned piglets. A total of 18 sows (Landrace × Yorkshire) were randomly assigned to dietary treatments based on average parity (1.78) with nine replicates per treatment. The feeding period was 35 days, from d 7 before farrowing to d 7 after weaning. The lactation period was 21 d. A total of 96 piglets were randomly selected from each sow treatment group and allocated to 24 replicate pens with four pigs (mixed sex) per pen. The feeding period of weaned piglets was 35 days (phase 1, days 1-7; phase 2, days 8-21; phase 3, days 22-35). Dietary treatments in sows and weaned piglets consisted of a basal control diet with or without 500 mg/kg VHE. The data showed that VHE supplementation had no effect on the reproductive performance of sows, but improved the growth performance of weaned piglets, in which the increase of average daily gain during days 1-7 (P=0.006) and 1-35 (P=0.032) and feed efficiency during days 22-35 (P=0.026) and 1-35 (P=0.020) in weaned piglets were observed. Therefore, supplementing VHE to the diet of sows and their weaned offspring was beneficial to the growth performance of weaned piglets.

Bromodomain and extraterminal domain (BET) proteins are epigenetic readers that regulate gene expression. We investigated whether variants in BET genes are associated with survival outcomes for lung cancer. To do this, the associations between 77 variants in BET family genes and survival outcomes were analyzed in 773 non‐small‐cell lung cancer (NSCLC) patients who underwent surgery (349 and 424 patients in the discovery and validation cohorts, respectively). We found that six variants were significantly associated with overall survival (OS) in the discovery cohort, and one variant (rs2506711C>T) was replicated in the validation cohort. BRD3 rs2506711C>T is located in the repressed area and has a strong linkage disequilibrium with rs2427964C>T in the promoter region. BRD3 rs2427964C>T was significantly associated with worse OS in the discovery cohort, validation cohort, and combined analysis. In a luciferase assay, promoter activity in the BRD3 rs2427964 T allele was significantly higher than that in the BRD3 rs2427964 C allele, which selectively bound with the transcriptional repressor SIN3A. Knockdown of BRD3 with BRD3‐specific siRNA decreased the proliferation and migration of lung cancer cells while also increasing the rate of apoptosis. These results suggest that BRD3 rs2427964C>T increases BRD3 expression through increased promoter activity, which is associated with poor prognosis for lung cancer., In this study, we investigated the association of BET gene variants with survival of patients with non‐small‐cell lung cancer (NSCLC). We observed that the rs2427964C>T SNP in the BRD3 promoter region was associated with poorer survival outcome. BRD3 promoter activity was higher in rs2427964_T than in rs2427964_C, which selectively bound with the transcriptional repressor SIN3A. Additionally, BRD3 silencing decreased the proliferation and migration of NSCLC cells. Our data suggest that elevated BRD3 expression regulated by rs2427964C>T leads to reduced overall survival in patients with NSCLC.

Background & Aims Tumor necrosis factor alpha (TNFα) is considered a major tissue damage-promoting effector in Crohn’s disease (CD) pathogenesis. Patient-derived intestinal organoid (enteroid) recapitulates the disease-specific characteristics of the intestinal epithelium. This study aimed to evaluate the intestinal epithelial responses to TNFα in enteroids derived from healthy controls and compare them with those of CD patient-derived enteroids. Methods Human enteroids derived from patients with CD and controls were treated with TNFα (30 ng/mL), and cell viability and gene expression patterns were evaluated. Results TNFα induced MLKL-mediated necroptotic cell death, which was more pronounced in CD patient-derived enteroids than in control enteroids. Immunohistochemistry and RNA sequencing revealed that treatment with TNFα caused expansion of the intestinal stem cell (ISC) populations. However, expanded ISC subpopulations differed in control and CD patient-derived enteroids, with LGR5+ active ISCs in control enteroids and reserve ISCs, such as BMI1+ cells, in CD patient-derived enteroids. In single-cell RNA sequencing, LGR5+ ISC-enriched cell cluster showed strong expression of TNFRSF1B (TNFR2) and cyclooxygenase-prostaglandin E2 (PGE2) activation. In TNFα-treated CD patient-derived enteroids, exogenous PGE2 (10 nmol/L) induced the expansion of the LGR5+ ISC population and improved organoid-forming efficiency, viability, and wound healing. Conclusions TNFα increases necroptosis of differentiated cells and induces the expansion of LGR5+ ISCs. In CD patient-derived enteroids, TNFα causes LGR5+ stem cell dysfunction (expansion failure), and exogenous PGE2 treatment restored the functions of LGR5+ stem cells. Therefore, PGE2 can be used to promote mucosal healing in patients with CD., Graphical abstract

Background/Aims: Pleural fluid adenosine deaminase (ADA) levels are useful in discriminating tuberculous pleural effusions (TPEs) from malignant pleural effusions (MPEs). However, some patients with MPE exhibit high-ADA levels, which may mimic TPEs. There is limited data regarding the differential diagnosis between high-ADA MPE and high-ADA TPE. This study aimed to identify the predictors for distinguishing high-ADA MPEs from high-ADA TPEs.Methods: Patients with TPE and MPE with pleural f luid ADA levels ≥ 40 IU/L were included in this study. Clinical, laboratory, and radiological data were compared between the two groups. Independent predictors and their diagnostic performance for high-ADA MPEs were evaluated using multivariate logistic regression analysis and receiver operating characteristic curve.Results: A total of 200 patients (high-ADA MPE, n = 30, and high-ADA TPE, n = 170) were retrospectively included. In the multivariate analysis, pleural fluid ADA, pleural f luid carcinoembryonic antigen (CEA), and pleural nodularity were independent discriminators between high-ADA MPE and high-ADA TPE groups. Using pleural ADA level of 40 to 56 IU/L (3 points), pleural CEA level ≥ 6 ng/mL (6 points), and presence of pleural nodularity (3 points) for predicting high-ADA MPEs, a sum score ≥ 6 points yielded a sensitivity of 90%, specificity of 96%, positive predictive value of 82%, negative predictive value of 98%, and area under the receiver operating characteristic curve of 0.965.Conclusions: A scoring system using three parameters may be helpful in guiding the differential diagnosis between high-ADA MPEs and high-ADA TPEs.

Anti-death receptor 5 (DR5) antibody is a potential therapeutic agent for liver fibrosis because it exhibits anti-fibrotic effects by inducing the apoptosis of activated hepatic stellate cells (HSCs), which are responsible for hepatic fibrogenesis. However, the clinical applications of anti-DR5 antibodies have been limited by their low agonistic activity against DR5. In this study, an anti-DR5 antibody-curcumin conjugate (DCC) was prepared to investigate its effect on the clearance of activated HSCs. The DCC was synthesized through a coupling reaction between a maleimide-functionalized curcumin derivative and a thiolated anti-DR5 antibody. No significant differences were observed in the uptake behaviors of activated HSCs between the bare anti-DR5 antibodies and DCC. Owing to the antioxidant and anti-inflammatory effects of curcumin, DCC-treated HSCs produced much lower levels of reactive oxygen species and inducible nitric oxide synthase than the bare anti-DR5 antibody-treated HSCs. Additionally, the anti-fibrotic effects of DCC on activated HSCs were more prominent than those of the bare anti-DR5 antibodies, as demonstrated by the immunocytochemical analysis of α-smooth muscle actin. DCC preferentially accumulated in the liver after its systemic administration to mice with liver fibrosis. Thus, DCC may serve as a potential therapeutic agent for treating liver fibrosis.

The purpose of this study was to evaluate the effects of dietary supplementation of Quillaja saponin (QS) on growth performance, nutrient digestibility, fecal microbiota, and fecal gas emission in growing pigs. A total of 50 crossbred growing pigs [(Yorkshire × Landrace) × Duroc] with an initial body weight of 23.83 ± 1.95 kg were randomly assigned to one of two treatments for a 56 d trial with five replicate pens per treatment and five pigs (two barrows and three gilts) per pen. Dietary treatments including control diet and control diet supplemented with 200 mg·kg−1 QS. The average daily gain was significantly increased during days 0–56, whereas the fecal ammonia emission on day 56 and fecal coliform bacteria counts on day 28 were significantly decreased in pigs fed with QS-containing diet. However, dietary supplementation of QS had no significant effects on apparent total tract digestibility. In conclusion, dietary supplementation of 200 mg·kg−1 QS had beneficial effects on growth performance, fecal microbiota, and fecal gas emission in growing pigs. Considering the carry-over effects, the adaption period should be at least 28 d when supplementing 200 mg·kg−1 QS to the diet of growing pigs for improving the growth performance.

A total of 160 growing pigs (24.69 ± 1.89 kg) were randomly assigned to one of four treatments in a 2 × 2 factorial design with two different levels of nutrient density diet with or without 0.3% probiotic (Lactobacillus plantarum). Each treatment had eight replicates with five pigs (three gilts and two barrows) per pen. At the end of the trial, pigs fed 0.3% probiotic supplement had significantly increased body weight, whereas the average daily gain and gain to feed ratio was significantly increased in both probiotic and high-nutrient density (HD) diet. The nutrient digestibility of dry matter was significantly increased in pigs fed HD diet, whereas nitrogen and gross energy digestibility and blood characters immunoglobulin and lymphocyte counts were significantly increased in both HD and probiotic groups. Inclusion of HD diet with 0.3% probiotic significantly decreased NH3 and H2S gas emission. Moreover, nitrogen and energy showed a significant interaction between probiotic and density diet. In summary, dietary probiotics with HD diet increased the growth performance, nutrient digestibility, blood profile, and reduced gas emission. We suggest that 0.3% probiotic with HD diet could serve as an alternative feed additive to enhance the growth performance of growing pigs.

A total of 360 one-day-old broiler chicks were randomly assigned to four treatments with five replicate cages and 18 birds per cage for a 35 d trial to investigate the effects of supplementing Achyranthes japonica Nakai (AJN) root extract in low crude protein (CP) diet on growth performance and carcass traits. Experimental diets were divided as standard CP content diet, low CP content (LCP) diet, and LCP diet supplemented with 0.025% or 0.050% AJN root extract. Dietary CP reduction impaired growth performance and carcass traits, whereas supplementing AJN root extract improved growth performance and carcass traits.

Bacterial β-glucuronidase in the intestine is involved in the conversion of 7-ethyl-10- hydroxycamptochecin glucuronide (derived from irinotecan) to 7-ethyl-10-hydroxycamptothecin, which causes intestinal bleeding and diarrhea (side effects of anti-cancer drugs). Twelve compounds (1-12) from Polygala tenuifolia were evaluated in terms of β-glucuronidase inhibition in vitro. 4-O-Benzoyl-3'-O-(O-methylsinapoyl) sucrose (C3) was highly inhibitory at low concentrations. C3 (an uncompetitive inhibitor) exhibited a ki value of 13.4 μM; inhibitory activity increased as the substrate concentration rose. Molecular simulation revealed that C3 bound principally to the Gln158-Tyr160 enzyme loop. Thus, C3 will serve as a lead compound for development of new β- glucuronidase inhibitors.

Three undescribed cassane-type diterpenoids (CAs), caesalpulcherrins K-M (1–3), together with three known ones (4–6) were isolated from the aerial parts of Caesalpinia pulcherrima (L.) Sw (Fabaceae). Their structures were elucidated via analysis of NMR (1 D and 2 D) and HRESIMS data. The character for caesalpulcherrin K possessing the olefin bond at C-11 and C-12 in its cassane skeleton was observed, which belonged to a small group among more than 450 CAs. That is, only fifteen derivatives have been reported up to now, to our knowledge. Biological evaluation revealed that compounds 1–6 exhibited moderate anti-inflammatory activity, with an IC50 value from 6.04 ± 0.34 to 8.92 ± 0.65 μM. Furthermore, compounds 5 and 6 exhibited significant α-glucosidase inhibitory activity at 10 μM.

Objective To investigate differences in the heritability of skeletodental characteristics between twin pairs with skeletal Class I and Class II malocclusions. Methods Forty Korean adult twin pairs were divided into Class I (C-I) group (0° ≤ angle between point A, nasion, and point B [ANB]) ≤ 4°; mean age, 40.7 years) and Class II (C-II) group (ANB > 4°; mean age, 43.0 years). Each group comprised 14 monozygotic and 6 dizygotic twin pairs. Thirty-three cephalometric variables were measured using lateral cephalograms and were categorized as the anteroposterior, vertical, dental, mandible, and cranial base characteristics. The ACE model was used to calculate heritability (A > 0.7, high heritability). Thereafter, principal component analysis (PCA) was performed. Results Twin pairs in C-I group exhibited high heritability values in the facial anteroposterior characteristics, inclination of the maxillary and mandibular incisors, mandibular body length, and cranial base angles. Twin pairs in C-II group showed high heritability values in vertical facial height, ramus height, effective mandibular length, and cranial base length. PCA extracted eight components with 88.3% in the C-I group and seven components with 91.0% cumulative explanation in the C-II group. Conclusions Differences in the heritability of skeletodental characteristics between twin pairs with skeletal Class I and II malocclusions might provide valuable information for growth prediction and treatment planning.

BACKGROUND & AIMS This multicenter cohort study aimed to compare the real-world biochemical response rates during tenofovir alafenamide (TAF), tenofovir disoproxil fumarate (TDF), and entecavir (ETV) treatment in chronic hepatitis B virus (HBV) infection patients. METHODS Overall, 1282 treatment-naive patients with CHB who commenced TAF (n = 270), TDF (n = 617), or ETV (n = 395) were analysed for biochemical response rates during the antiviral treatment using a time-dependent Cox proportional hazard model after the inverse probability of treatment weighting (IPTW). RESULTS Patients treated with ETV were older (55.1 ± 11.5 years) than TAF or TDF (P

Digestibility of pet food can affect the health of dog, especially of aged animals. To maintain the health of dogs in an overall good status it is necessary to provide nutritionally balanced food. For example, the digestibility of dogs was known to be decreased along aging. In addition, losing teethes is an often event in aged dogs that could induce a problem to eat a large size dry pet food. Nonetheless, few detailed information is available on the most suited feeding for aged dogs. As part of the nutritional study of food for aged dogs, in this study, we tested whether food type impacts on digestibility on adult versus senior dogs. The methodology to measure the digestibility of nutrients was chosen the index method using chromium oxide. Dogs were fed the same commercial dry or wet diets, which were supplemented with 0.5% chromium oxide. The wet food was prepared by adding twice volume of water in the dry food prior to incubated overnight (14–16 hours) at room temperature. After five days, their feces were collected up to a total weight of > 200 g which was the amount to analyze undigested nutrients in feces as 3 repeats. In the apparent total tract digestibility analysis of the experimental breed, no difference in the digestibility of crude protein, crude fat, crude fiber, ash, and energy was observed regarding the moisture content of the food. Noteworthy, the digestibility of nitrogen free extract was significantly increased in senior dogs fed dry dog food compared with adult dogs fed the same diet, whereas no difference was observed between senior and adult dogs fed wet food. The small breed dogs showed similar results to the experimental breed dogs. However, the digestibility of crude fat was additionally affected by age and food type unlike the experimental breed dogs. This finding suggests that the food moisture content affects the digestibility of nutrients in dogs with aging. Hence, it may be helpful to determine the nutrient contents in foods for senior dogs depending on the food type.

Background and objective This study was carried out to develop an effective technique for raising seedlings of Veronica pyrethrina Nakai, a native plant species in the Korean Peninsula, in plug trays. Methods To investigate the optimum plug cell size and sowing media, we sowed seed in to plug trays with 34, 21, and 10 mL cells and filled with a commercial horticultural substrate and mixtures of peatmoss and perlite in 1:1, 3:1, and 4:1 ratios. Fertilization levels were set at 0, 500, 1000 and 2000 mg • L−1. Results Plug cell size did not significantly influence the seedling growth of V. pyrethrina. By substrate type, the growth rate was highest in the horticultural substrate, followed by 4:1, 3:1, and 1:1. Growth by fertilization level was higher in all fertilized treatment groups than in the control group, and there was no difference among 500, 1000, and 2000 mg • L−1. Conclusion The results of this study proved that it is most suitable for raising seedlings of V. pyrethrina to sow the seeds in a 10 mL cell plug tray filled with horticultural substrates, and apply fertilizers with less than 500 mg • L−1 concentration.

Mitogen-activated protein kinases (MPKs) play roles as critical signal components in the environmental stress responses and developmental processes in plants. Calcium ion (Ca2+) is one of the most essential ubiquitous intracellular second messengers involved in many signal transduction pathways in plants. It was previously known that MPKs are activated by the increasing Ca2+ concentration. However, the mechanism of how Ca2+ activates MPKs is not elucidated yet. In this study, we revealed that Ca2+ could activate MPK signaling pathway via inhibiting the activity of a dual-specificity protein phosphatase1 (DsPTP1) by Ca2+/calmodulin (CaM). We showed that DsPTP1 directly interacts with MPK6 in vitro and in vivo. DsPTP1 was able to inactivate the active MPK6 by dephosphorylation. Interestingly, the DsPTP1-mediated dephosphorylation of MPK6 was strongly inhibited by Ca2+/CaM. Moreover, this inhibition was caused by the binding of CaM to the calmodulin-binding domain II (CaMBDII) of DsPTP1. This study implies that Ca2+/CaM is involved in the activation of MPKs through the inhibition of DsPTP1.

Background Pharmacokinetic-pharmacodynamic (PK/PD) targets of vancomycin therapy have been recognized for methicillin-resistant Staphylococcus aureus infections but not for other gram-positive bacterial infections. Therefore, we investigated whether vancomycin concentration targets such as the trough level and ratio of the area under the curve to minimum inhibitory concentration (AUC/MIC) are associated with the treatment outcome in enterococcal bacteremia. Methods A retrospective cohort analysis enrolled patients with bacteremia caused by vancomycin-susceptible Enterococcus faecium and Enterococcus faecalis who were treated with vancomycin from January 2007 to December 2017 at a tertiary hospital located in Seoul, South Korea. Patients without vancomycin concentrations were excluded from the study. The primary outcome was 28-day all-cause mortality. Results A total of 37 patients were enrolled—26 with E. faecium infection and 11 with E. faecalis infection. The 28-day all-cause mortality rate was 21.6 %. In univariate analysis, vancomycin trough level (≤ 15 µg/mL; p = 0.042), age (p = 0.044), and septic shock (p = 0.049) were associated with 28-day mortality but not AUC24/MIC (> 389; p = 0.479). In multivariate analysis, vancomycin trough concentration (≤ 15 µg/mL; p = 0.041) and younger age (p = 0.031) were associated with 28-day mortality in patients with enterococcal bacteremia. Conclusions In this study, a vancomycin trough level of 15 µg/mL or lower was associated with 28-day mortality in enterococcal bacteremia. However, relatively large prospective studies are needed to examine the efficacy of vancomycin PK/PD parameters in patients with enterococcal bacteremia.

Background Inflammatory bowel disease (IBD) is a chronic inflammatory disease of the gastrointestinal tract whose occurrence is attributed to various factors, including genetic factors, immune response, microbial changes, and oxidative stress. Microbial-targeted therapy has emerged as an alternative to immunosuppressive therapy for IBD. Methods The effects of an atypical commensal Escherichia coli strain harboring an additional catalase gene (compared to typical E. coli strain) on dextran sulfate sodium (DSS)-induced colitis were explored in mice. Results The atypical E. coli (atEc) significantly restored body weight, reduced disease activity score, and improved histological scores in mice with colitis. Hydrogen peroxide levels in colitis mice were noticeably decreased when the mice were administered atEc. The proinflammatory cytokine levels were decreased and regulatory T cell numbers were increased after the administration of atEc. The abundance of Firmicutes was significantly recovered, while that of Proteobacteria decreased in atEc -treated mice compared with that in vehicle-treated wild-type mice. To investigate the role of interleukin (IL)-17A in mediating the anti-inflammatory effects of the atEc, IL-17A‒knockout mice were orally administered atEc. Clinical and immune responses and microbial composition were significantly reduced in IL-17A‒knockout mice compared with those in wild-type mice. Conclusions atEc ameliorates colonic inflammation by controlling hydrogen peroxide levels, immune responses (including regulatory T cells and IL-17A), and microbial composition. atEc could be a novel candidate of probiotic for IBD treatment.

Tremella fuciformis TFC6 mycelia was isolated from its fruiting body. T. fuciformis TFCUV5 was obtained from TFC6 mycelia by ultraviolet mutagenesis to improve extracellular-polysaccharide (EPS) yield. In addition, we investigated the physicochemical properties and functionality of EPS for industrial applications and the effect of EPS on enhancement of the moisturizing factor and antiwrinkle effect in skin cells. The EPS yield was improved upon fermentation by the mutant strain through optimization of the medium composition and culture conditions to a maximum of 8.4 g/L; the productivity was 1.9 g/L-day under optimal culture conditions (initial pH 7.0 at 25°C, 300 rpm, 2 vvm). EPS with a molecular weight of 1.79 × 106 (± 0.721%) comprised mannose, xylose, glucuronic acid, fucose, and glucose. EPS extract increased both moisture and the antiwrinkle factor in skin cells. Therefore, EPS from TFCUV5 might have potential to be used in the cosmetics industry.

Summary Seven species belonging to Suborder Hoplolaimina are characterised using integrative taxonomy, considering both morphological and molecular phylogenetic analyses of the 28S-rRNA, ITS-rRNA and COI gene sequences. It is evident that, as more populations of Pratylenchus zeae are continuously characterised, the species continues to display an ever-increasing intraspecific genetic variation within the 28S-rRNA and ITS-rRNA genes. However, the COI gene sequences exhibit minimum intraspecific variation and thus might be the most powerful DNA barcoding marker for the precise identification of P. zeae and should therefore be recommended as a complementary technique in the identification process of the species. Pratylenchus zeae, Meloidogyne graminicola and Heterodera pratensis are characterised herein for the first time in Korea, while the presence in Korea of P. penetrans, P. scribneri, H. avenae, and M. marylandi, is molecularly confirmed.

Developing methods to improve the regenerative capacity of somatic stem cells (SSCs) is a major challenge in regenerative medicine. Here, we propose the forced expression of LIN28A as a method to modulate cellular metabolism, which in turn enhances self-renewal, differentiation capacities, and engraftment after transplantation of various human SSCs. Mechanistically, in undifferentiated/proliferating SSCs, LIN28A induced metabolic reprogramming from oxidative phosphorylation (OxPhos) to glycolysis by activating PDK1-mediated glycolysis-TCA/OxPhos uncoupling. Mitochondria were also reprogrammed into healthy/fused mitochondria with improved functional capacity. The reprogramming allows SSCs to undergo cell proliferation more extensively with low levels of oxidative and mitochondrial stress. When the PDK1-mediated uncoupling was untethered upon differentiation, LIN28A-SSCs differentiated more efficiently with an increase of OxPhos by utilizing the reprogrammed mitochondria. This study provides mechanistic and practical approaches of utilizing LIN28A and metabolic reprogramming in order to improve SSCs utility in regenerative medicine.

Short-chain fatty acids (SCFAs) are metabolic products produced during the microbial fermentation of non-digestible fibers and play an important role in metabolic homeostasis and overall gut health. In this study, we investigated the effects of supplementation with multispecies probiotics (MSPs) containing Bacillus amyloliquefaciens, Limosilactobacillus reuteri, and Levilactobacillus brevis on the gut microbiota, and fecal SCFAs and lactate levels of weaned pigs. A total of 38 pigs weaned at 4 weeks of age were fed either a basal diet or a diet supplemented with MSPs for 6 weeks. MSP administration significantly increased the fecal concentrations of lactate (2.3-fold; p < 0.01), acetate (1.8-fold; p < 0.05), and formate (1.4-fold; p < 0.05). Moreover, MSP supplementation altered the gut microbiota of the pigs by significantly increasing the population of potentially beneficial bacteria such as Olsenella, Catonella, Catenibacterium, Acidaminococcus, and Ruminococcaceae. MSP supplementation also decreased the abundance of pathogenic bacteria such as Escherichia and Chlamydia. The modulation of the gut microbiota was observed to be strongly correlated with the changes in fecal SCFAs and lactate levels. Furthermore, we found changes in the functional pathways present within the gut, which supports our findings that MSP modulates the gut microbiota and SCFAs levels in pigs. The results support the potential use of MSPs to improve the gut health of animals by modulating SCFAs production.

A total of 16 sows (Landrace × Yorkshire) were used in a 33-d trial (7 d before expected parturition) to determine the effects of dietary-coated omega-3 fatty acid supplementation on reproduction performance, growth performance, nutrient digestibility, and blood profiles in lactating sows and suckling piglets. Pigs were randomly allotted into two treatments with eight replicates per treatment, and the parity was 4.9. The dietary treatments were as follows: CON, corn–soybean-meal-based diet [omega-6:omega-3 polyunsaturated fatty acids (PUFA) ratio of 17:1] and TRT, CON + 0.9% omega-3 PUFA (omega-6:omega-3 PUFA ratio of 5:1). The supplementation of coated omega-3 increased piglet’s body weight (BW) (day 7) and average daily gain (ADG) (days 0–7) (P 0.05) were observed on reproduction performance, nutrient digestibility, and blood profile in sows. In conclusion, our study demonstrated that the dietary supplementation of 0.9% omega-3 PUFA in corn–soybean-meal-based diet (omega-6:omega3 PUFA ratio of 5:1) improved BW and ADG of suckling piglets during the first week.

Background and objective This study was conducted on Forsythia velutina, a special plant, in Gyeongsangnam-do Arboretum under the Gyeongsangnam-do Forest Environment Research Institute, which is located in the southern part of Korea. Methods The research aimed to analyze the flowering characteristics of the plant by calculating the optimal temperature and humidity according to the flowering time and flowering period for 8 years from 2010 to 2017 in order to provide basic data for bioclimate studies of endemic plants. Results It was observed that the Forsythia velutina showed a life cycle from mid-March and to mid-November. Average growth period was 243 (± 6.5) days. In testing the reliability of a single variable according to the meteorological factors, the Cronbach’s Alpha was 0.701, which indicates that the findings were relatively reliable. The average date of flowering was March 16 (SD = 5.8) and the average date on which blossoms fall was March 29 (SD = 5.2). A substantial difference in flowering period was observed from year to year 11 to 23 days, with an average of 16 days (± 4.7). The temperature and humidity in February to March, which affect the flowering, were 2.9–5.5°C, and 66.5–73.0%, respectively, and showed differences every year. Conclusion The correlation between flowering time and meteorological factors was positive, and the highest daily temperature and average daily temperature had the highest significance. When establishing basic data on plant species for the conservation of endemic plants, the changes in life cycle events and weather conditions are identified. It is believed that it will be helpful in establishing a conservation strategy for the plant species in the future.

To understand the mechanism of ring shakes in Dahurian larch (Larix gmelinii), the ring shake surface on the tangential section was observed and compared with the shear surface of green and air-dry wood. Macroscopically, the ring shakes occurred in the heartwood between the 20th and 40th growth ring. The ring shake surface exhibited an even and clean structure without the fluff. The shear surface of the green wood showed a larger amount of fluff compared to that of air-dry wood. In microscopy, ring shake failure occurred at the end of the latewood and/or the beginning of earlywood or within the earlywood zone. The ring shake surface was covered with a resinous substance, and the wood cells were observed after removing the resinous substance with ethanol. The tracheid walls in the ring shake and shear surface of green wood primarily exhibited intercell failure and rarely intrawall and transwall failures. In air-dry wood, the tracheid walls in the shear surface mostly exhibited intrawall and transwall failures. In the ring shake surface, there was hardly any failure in the epithelial and ray cells, thereby showing a distinct difference compared to the shear surface of the green and air-dry woods.

This study was conducted to investigate the physicochemical properties and anti-inflammatory effects of the enzymatic extracts of Sargassum patens C. Agardh (SP) using crude enzyme from Shewanella oneidensis PKA 1008. SP is a brown alga containing 30–67% carbohydrates and polysaccharides, such as alginate, laminaran, and fucoidan. The contents of moisture, crude protein, crude lipid, ash, carbohydrate, and alginate in SP were 8.29, 18.10, 0.60, 21.64, 51.37, and 32.37%, respectively. The S. oneidensis PKA 1008 strain was isolated from Ulva pertusa and used to degrade alginate. To obtain the optimum degradation conditions, SP and crude enzyme from S. oneidensis PKA 1008 were prepared in a ratio of 1:1(v/v). The mixture was incubated at 30°C for 0–48 h. The changes in pH, color value, reducing sugar, viscosity, and TLC of SP-degrading extract were confirmed. The pH and viscosity significantly decreased at 24 h compared to those at 0 h. The highest reducing sugar concentration of the enzymatic extract was 571.91 µg/mL at 24 h. The enzymatic extracts were visualized by thin-layer chromatography (TLC) using a solvent system of 1-butanol: methanol: water, 4:1:2 (v/v) and degraded into monomers at 24 h. The anti-inflammatory effects of the enzymatic extracts at 0 and 48 h were measured using LPS-induced RAW 264.7 cells. These results indicate that crude enzyme from S. oneidensis PKA 1008 can be used to enhance the polysaccharide degradation of SP and its anti-inflammatory effect.

A new benzo[g]isochromene possessing a conformationally mobile moiety was identified from Rubia philippinensis. The 2D structure was established utilizing spectrometric and spectroscopic techniques with variable temperatures. The configurational investigation of the flexible moiety was investigated utilizing contemporary NMR-combined computational tools such as DP4, direct J-DP4, and DP4 Plus. The probabilities computed from DP4 Plus analysis, featuring inclusion of an additional geometry optimization process, demonstrated more conclusive probability scores among the analyses used. The configurational assignment was also supported by compositional and molecular orbital analyses. Compound 1 inhibited soluble epoxide hydrolase (IC50 = 0.6 ± 0.01 μM), an enzyme associated with cardiovascular disorders.

BACKGROUND Antibiotic resistance to Helicobacter pylori (H. pylori) infection, which ultimately results in eradication failure, has been an emerging issue in the clinical field. Recently, to overcome this problem, an antibiotic sensitivity-based tailored therapy (TT) for H. pylori infection has received attention. AIM To investigate the efficacy and safety profiles of TT for H. pylori infection treatment compared to a non-bismuth quadruple therapy, concomitant therapy (CT) regimen. METHODS We included patients (> 18 years) with an H. pylori infection and without a history of Helicobacter eradication who visited the Gil Medical Center between March 2016 and October 2020. After being randomly assigned to either the TT or CT treatment group in 1 to 1 manner, patient compliance, eradication success rate (ESR), and patient-reported side effects profiles were assessed and compared between the two groups. H. pylori infection was diagnosed using a rapid urease test, Giemsa stain, or dual priming oligonucleotide polymerase chain reaction (DPO-PCR). Tailored eradication strategy based through the presence of a 23S ribosomal RNA point mutation. For the TT group, a DPO-PCR test, which detected A2142G and/or A2143G point mutations, and a clarithromycin resistance test were performed. Patients in the clarithromycin-resistant group were treated with a bismuth-containing quadruple combination therapy, while those with sensitive results were treated with the standard triple regimen. RESULTS Of the 217 patients with a treatment naive H. pylori infection, 110 patients [mean age: 58.66 ± 13.03, men, n = 55 (50%)] were treated with TT, and 107 patients [mean age: 56.67 ± 10.88, men, n = 52 (48.60%)] were treated with CT. The compliance (TT vs CT, 100% vs 98.13%, P = 0.30), and follow-up loss rates (8.18% vs 9.35%, P = 0.95) were not significantly different between the groups. The ESR after treatment was also not statistically different between the groups (TT vs CT, 82.73% vs 82.24%, P = 0.95). However, the treatment-related and patient-reported side effects were significantly lower in the TT group than in the CT group (22.77% vs 50.52%, P < 0.001). CONCLUSION The DPO-based TT regimen shows promising results in efficacy and safety profiles as a first-line Helicobacter eradication regimen in Korea, especially when physicians are confronted with increased antibiotic resistance rates.

Antibodies are recognition molecules that can bind to diverse targets ranging from pathogens to small analytes with high binding affinity and specificity, making them widely employed for sensing and therapy. However, antibodies have limitations of low stability, long production time, short shelf life, and high cost. Here, we report a facile approach for the design of luminescent artificial antibodies with nonbiological polymeric recognition phases for the sensitive detection, rapid identification, and effective inactivation of pathogenic bacteria. Transition-metal dichalcogenide (TMD) nanosheets with a neutral dextran phase at the interfaces selectively recognized S. aureus, whereas the nanosheets bearing a carboxymethylated dextran phase selectively recognized E. coli O157:H7 with high binding affinity. The bacterial binding sites recognized by the artificial antibodies were thoroughly identified by experiments and molecular dynamics simulations, revealing the significance of their multivalent interactions with the bacterial membrane components for selective recognition. The luminescent WS2 artificial antibodies could rapidly detect the bacteria at a single copy from human serum without any purification and amplification. Moreover, the MoSe2 artificial antibodies selectively killed the pathogenic bacteria in the wounds of infected mice under light irradiation, leading to effective wound healing. This work demonstrates the potential of TMD artificial antibodies as an alternative to antibodies for sensing and therapy.

The purpose of this study was to determine the effect of organic acid and ultraviolet (UV)-C treatment on the storage stability and microbial quality of seasoned squid product. The overall preference score was lower in the 1.5 M citric acid group than in the untreated group. Since the pH of the citric acid-treated product remained low during storage, its viable cell count reduced 21.34% compared with that of the untreated group. Compared with the untreated group, the samples treated with lemon concentrate showed a remarkably lower taste score but no significant difference in the scores for color, overall smell, fishy smell, off-flavor, texture, and hardness. In addition, during storage, the viable cell count in the lemon concentrate-treated group reduced to 7.42% compared to that of the untreated group. On day 50 of storage, the viable cell count of the lemon concentrate-treated group reduced 28.16% more than that of the untreated group. UV-C treatment of Bacillus subtilis and Aspergillus ruber isolated from seasoned squid products inhibited growth after irradiation for 35 and 90 minutes, respectively. These findings indicate that UV-C, citric acid, and lemon concentrate treatment during the product manufacturing process can improve the storage and quality of seasoned squid products.

We aimed to identify somatic genetic alterations in pure growth hormone (GH)-secreting pituitary adenomas without GNAS variants. Patients with GH-secreting pituitary adenoma who underwent transsphenoidal adenomectomy at Severance Hospital, Yonsei University College of Medicine were recruited. Somatic genetic alterations were profiled by whole-exome sequencing (WES) and targeted resequencing. WES was performed using DNA from nine GH-secreting pituitary tumors and corresponding blood samples. Absence of GNAS variant was confirmed by Sanger sequencing. For targeted resequencing of 140 fixed tissues, 48 WES-derived candidate genes and 7 GH-secreting pituitary adenoma-associated genes were included. Forty-eight genes with 59 somatic variants were identified by WES. In targeted resequencing, variants in 26 recurrent genes, including MAST4, PRIM2, TNN, STARD9, DNAH11, DOCK4, GPR98, BCHE, DARS, CUBN, NGDN, PLXND1, UNC5B, and COL22A1, were identified, but variants in previously reported genes were not detected. BCHE, DARS, NGDN, and UNC5B variants were associated with increased GH-secreting pituitary tumor biochemical activity, which was confirmed in vitro. Although recurrent point variants were rare, several somatic variants were identified in sporadic pure GH-secreting pituitary adenomas. Several somatic variants may affect pathways involved in the tumorigenesis and biochemical activities of GH-secreting pituitary adenomas.

As a consequence of difficulties in mass culturing dinoflagellates, there have been few ecological studies and little information on the interactions of microbial planktonic communities with species that cause harmful algal blooms (HABs). To address this problem, we used a water circulation culture system that provided in-water air bubbles to achieve active growth and mass cultivation of the dinoflagellate Alexandrium affine. This facilitated assessment in a large-scale mesocosm (1000 L) of the short-term response of the marine pelagic planktonic community to inoculation with A. affine under diatom-dominant conditions. Members of the pelagic planktonic community (bacteria and phytoplankton) varied in their response to A. affine addition, even over short time periods. Following nutrient depletion, the population of the dominant diatom (Chaetoceros debilis) rapidly declined, while the proportion of A. affine increased to more than 80% in both the low and high concentration treatment groups. The bacterial community was influenced by the population dynamics of phytoplankton, but a similar effect was not evident for the mesozooplankton community. Rhodobacteraceae dominated during the diatom-dominant stage in the mesocosms, and their numbers were positively correlated with most of the diatoms, including C. debilis. In contrast, the bacterial SAR11 clade and C. debilis showed markedly opposite patterns, and their occurrences were strongly negatively correlated. At the end of the experiment, there were similar time-series changes evident between the major bacterial group, and phytoplankton of the SAR11 clade and A. affine, but these groups were not directly correlated in association network analysis, indicating that the SAR11 clade was more associated with the decline in diatom populations rather than having a stimulatory effect on dinoflagellates. The results indicate that when a large population of A. affine is introduced into an environment dominated by diatoms, it predominately contributes to changing the phytoplankton community by maintaining its own population under low nutrient conditions, rather than affecting the entire planktonic community.

The effectiveness of minimally invasive surgery (MIS)-distal chevron metatarsal osteotomy (DCMO) for the correction of moderate-to-severe hallux valgus deformity is unclear. This study aimed to compare the radiographic and clinical outcomes of our novel MIS-proximal chevron metatarsal osteotomy (PCMO) with those of MIS-DCMO performed during the same timeframe. We prospectively compared the outcomes of patients who underwent MIS-PCMO (n = 20 patients; 22 cases) with those of patients who underwent MIS-DCMO (n = 23 patients; 26 cases) for moderate-to-severe hallux valgus deformity (hallux valgus angle [HVA] ≥ 30° and first-to-second intermetatarsal angle [IMA] ≥ 13°) between June 2017 and January 2019. The minimum follow-up duration for study inclusion was two years. The HVA, IMA, distal metatarsal articular angle (DMAA), relative length of the second metatarsal, medial sesamoid position, and Meary’s angle to evaluate the degree of deformity correction and its maintenance were measured pre-operatively and at the final follow-up. Compared with MIS-DCMO, MIS-PCMO resulted in significantly greater correction of the HVA (P

The objective of this study is to investigate the effect of dietary glucose oxidase (GOx) supplementation on the reproductive performance, litter performance, total tract digestibility, and blood profile of lactating sows fed corn-wheat-based diet. A total of twenty multiparous sows (Landrace × Yorkshire) were allocated into one of four treatments with five replicates per treatment. The dietary treatments were as follows: CON (Basal diet), GO1 (basal diet + 200 U GOx/kg), GO2 (basal diet + 300 U GOx/kg), GO3 (basal diet + 400 U Gox/kg). Dietary GOx supplementation did not affect lactating sow’s reproduction performance as well as body weight, backfat thickness, and body condition score during pre and post farrowing, and at weaning (p > 0.05). However, after farrowing to weaning period lactating sow’s fed GOx supplement has linearly (p = 0.0196) decreased the bodyweight loss. While, there were no effects (p > 0.05) observed on sows backfat thickness loss, average daily feed intake, and estrus interval among treatment groups. Dietary supplementation of GOx has linearly improved the body weight gain (p = 0.049) and average daily gain (p = 0.040) of suckling piglets. The total tract digestibility of dry matter and nitrogen was linearly increased with the graded level of GOx supplement. Also, a linear effect was observed on the glucose and superoxide dismutase of blood profile with the dietary inclusion of GOx. In summary, our finding indicates that the dietary inclusion of GOx supplement with corn-wheat-based diet had a beneficial effect on the nutrient digestibility and blood profile of lactating sows and improved the growth performance of suckling piglets.

Summary Hemicycliophora labiata was reported from the rhizosphere of Poa pratensis and for the first time in Korea. Females and juveniles are molecularly characterised and morphological and morphometric descriptions supplied. Species identification was made using an integrative approach considering morphological characteristics and the results of the analyses of the D2-D3 expansion segment of 28S rRNA, ITS1-5.8S-ITS2 of rRNA and the partial COI gene sequences. The phylogenetic position of H. labiata is resolved after recent misidentifications due to the existence of a wide morphological plasticity within the genus. Females and juveniles from Korea conform to the original description and also to subsequent species descriptions from Australia, South Africa, Sri Lanka, and India. Despite the close morphological similarities with H. typica de Man, 1921, the two species can be adequately differentiated based on molecular data. This is the first molecular characterisation of H. labiata. The use of molecular markers in species delimitation continues to explore the existence of species complexes, thus providing a better understanding of the unresolved species biodiversity within this speciose genus.

The outbreak of human toxoplasmosis can be attributed to ingestion of food contaminated with Toxoplasma gondii. Toxoplasmosis recently increased in domestic and stray dogs and cats. It prompted studies on the zoonotic infectious diseases transmitted via these animals. Sero- and antigen prevalences of T. gondii in dogs and cats were surveyed using ELISA and PCR, and B1 gene phylogeny was analyzed in this study. Toxoplasmosis antibodies were measured on sera of 403 stray cats, 947 stray dogs, 909 domestic cats, and 2,412 domestic dogs collected at nationwide regions, Korea from 2017 to 2019. In addition, whole blood, feces, and tissue samples were also collected from stray cats (1,392), stray dogs (686), domestic cats (3,040), and domestic dogs (1,974), and T. gondii-specific B1 gene PCR was performed. Antibody prevalence of stray cats, stray dogs, domestic cats, and domestic dogs were 14.1%, 5.6%, 2.3%, and 0.04%, respectively. Antigen prevalence of these animals was 0.5%, 0.2%, 0.1%, and 0.4%, respectively. Stray cats revealed the highest infection rate of toxoplasmosis, followed by stray dogs, domestic cats, and domestic dogs. B1 gene positives were 5 of stray cats, and identified to high/moderate pathogenic Type I/III group. These findings enforce that preventive hygienic measure should be strengthened at One Health level in dogs and cats, domestic and stray, to minimize human toxoplasmosis infections.

The fruit fly, Drosophila melanogaster, is mainly found in fermented and rotten fruits and is more tolerant to chemicals emitted during the fermentation process than other organisms. Its distinctive habitat suggests an evolutionary adaptation to the chemicals, such as acetic acid, ethanol, and 2-phenylethanol. Quantitative real-time PCR (qRT-PCR) assays can be performed to analyze the expression patterns of D. melanogaster genes putatively involved in chemical detoxification and metabolism, to better understand D. melanogaster adaptions to its environment. The selection of stably-expressed, internal reference genes across samples is crucial for accurate normalization of target gene expression parameters. In this study, we investigated the transcription levels of ten candidate reference genes: hsp22, ef1β, α-tub, rpL18, rpS3, argk, nd, tbp, gapdh, and ace, in D. melanogaster exposed to various concentrations of acetic acid, ethanol, and 2-phenylethanol, and expression stability of these genes was evaluated using three different programs: geNorm, NormFinder, and BestKeeper. These three software resulted in different stable genes, but suggested the selection of multiple reference genes for target gene normalization. For validation of reference genes, expression levels of adh were normalized with different references and combination of multiple genes. In the flies exposed to three chemicals, rpL18 was commonly suggested to be used for the most stable reference gene for comparing expression levels of genes potentially associated with environmental chemical tolerance in D. melanogaster.

A new spiral nematode Helicotylenchus asiaticus n. sp., recovered from sandy rhizosphere of Poa pratensis from Korea, is characterized based on integrative taxonomy, considering both morphological and molecular phylogenetic inferences from analyses of the 28S-rRNA and ITS-rRNA gene sequences. Additionally, H. caudatus is characterized for the first time outside its type locality; notes on the taxonomic status of H. microlobus are stated, and the existence of H. dihystera in Korea is molecularly confirmed. The new species is characterized by a lip region not offset; hemispherical, bearing 4–5 annuli; stylet knobs sloping posteriorly, rarely anteriorly flattened; spermatheca, offset and filled with sperms; incisures of the lateral field areolated in pharyngeal region, with incomplete areolation in the tail region; inner incisures usually distally modified into a u-shape or y-shaped configuration; phasmids postanal, situated at 3–8 annuli posterior to anus level; tail conical, bearing 8–15 annuli, ending in a rounded to pointed extremity; and males abundant. The new species is morphologically similar to H. erythrinae, H. californicus, H. electropicus, H. tropicus, H. conicus, H. elegans, H. interrogativus, H. saxeus, H. certus and H. silvaticus but differs from all, either by lip region shape, stylet knob shape, sperm filled spermatheca, phasmid position, tail termini shape and (or) presence of males. Sequence data analyses from amplified regions suggest that Helicotylenchus asiaticus n. sp. is a sister species to unidentified Helicotylenchus sp. From Korea.

Two populations of Tylenchorhynchus annulatus, recovered from loamy-soil rhizosphere of Zoysia japonica from Korea are described and illustrated based on integrative taxonomy, considering both morphological and molecular phylogenetic inferences from analyses of the 28S-rRNA and ITS-rRNA gene sequences. One of the populations manifested variation in species diagnostic characters; continuous lateral field incisures past the phasmid was not a constant character in all specimens examined, with some specimens manifesting fusion of inner incisures of the lateral field below the level of the phasmid and incomplete areolation of the lateral fields. The fusion of the inner incisures of the lateral field past the phasmid level is therefore a variable character within the group, and when used alone, may not be taxonomically reliable to delineate species within the genus. This is molecularly supported by genetic resemblance of the two populations with other characterized T. annulatus isolates based on D2-D3 expansion segment and ITS-rRNA. The overlapping disparities between the two populations are therefore herein treated as intraspecific variations within T. annulatus populations. Furthermore, comparison within all the published sequences of T. annulatus are made and recommendations for sequence corrections are given. Tylenchorhynchus thermophilus is characterized herein for the first time in Korea while T. annulatus and T. claytoni are molecularly confirmed.