1. Structure-based pharmacophore of COX-2 selective inhibitors and identification of original lead compounds from 3D database searching method
- Author
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Catherine Michaux, Bernard Pirotte, F. Julemont, Xavier de Leval, François Durant, and Jean-Michel Dogné
- Subjects
Models, Molecular ,Molecular model ,Stereochemistry ,Ring (chemistry) ,computer.software_genre ,Drug Discovery ,Humans ,Cyclooxygenase Inhibitors ,Binding site ,Pharmacology ,chemistry.chemical_classification ,Virtual screening ,Binding Sites ,Molecular Structure ,biology ,Database ,Chemistry ,Organic Chemistry ,Active site ,General Medicine ,Enzyme ,Cyclooxygenase 2 ,Enzyme inhibitor ,biology.protein ,Database Management Systems ,Pharmacophore ,computer - Abstract
A four-point pharmacophore of COX-2 selective inhibitors was derived from a training set of 16 compounds, using the Catalyst program. It consists of a H bond acceptor, two hydrophobic groups and an aromatic ring, in accordance with SAR data of the compounds and with topology of the COX-2 active site. This hypothesis, combined with exclusion volume spheres representing important residues of the COX-2 binding site, was used to virtually screen the Maybridge database. Eight compounds were selected for an in vitro enzymatic assay. Five of them show COX-2 inhibition close to that of nimesulide and rofecoxib, two reference COX-2 selective inhibitors. As a result, structure-based pharmacophore generation was able to identify original lead compounds, inhibiting the COX-2 isoform.
- Published
- 2006
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