1,260 results on '"Analysis"'
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2. Paired male Song Sparrows sing more when their mate is incubating
- Author
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Foote, Jennifer R. and Barber, Colleen A.
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Song-sparrows -- Behavior ,Birds -- Breeding ,Biological sciences ,Analysis ,Research ,Behavior - Abstract
The fertility announcement hypothesis proposes that avian males should sing at a high rate when their mate is fertile to guard their paternity. We examined if male Song Sparrows (Melospiza melodia) sing more during the incubation period when they are free of constraints of physical mate guarding. We assessed song rates of eight males for 1 hr-periods every 1-2 days during each breeding stage over two consecutive broods within one season. Males sang significantly more during periods when their mate was incubating than during the pre-fertile, or fertile periods, or while feeding young (second brood). Males may be singing at high rates during incubation to maintain contact with their mate and/or to advertise for extra-pair copulations., Song has two main functions, territory defense and mate attraction (Catchpole and Slater 1995). Song rate typically decreases after pairing (Catchpole and Slater 1995), but males of many species continue [...]
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- 2009
3. Seasonal patterns of song structure variation in a suboscine passerine
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Robertson, Bruce A., Fontaine, Joseph J., and Loomis, Elizabeth
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Birds -- Breeding ,Passeriformes -- Behavior ,Biological sciences ,Analysis ,Research ,Behavior - Abstract
Studies of song and its function in suboscine passerines are rare. We examined spatial and temporal variation in song structure in a wild population of Olive-sided Flycatchers (Contopus cooperi) and tested among hypotheses explaining this variation. Repeatable variation in song type was observed both within and among individuals. More than 10% of territorial males expressed atypical song types, i.e., permutations of sequential missing and repeated elements of the typical adult song. Atypical songs were predominantly expressed by unpaired males independent of habitat type. A small fraction of males sang atypical song through the middle of the breeding season, but all males sang only stereotypical adult song by the end of the season. These results suggest the expression of atypical songs reflect protracted vocal development rather than evolution of new song types, geographic variation in song structure, or an extensive song repertoire in Olive-sided Flycatchers., Suboscines comprise ~20% (1,151 species) of the Order Passeriformes (Sibley and Monroe 1990), but studies of bird song and its functions have focused almost exclusively on oscines. Suboscines are characteristically [...]
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- 2009
4. Breeding biology of the Grey-hooded Parrotbill (Paradoxornis zappeyi) at Wawushan, Sichuan, China
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Yingxin, Jiang, Yue-Hua, Sun, Nan, Lu, and Zhonglin, Bi
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Birds -- Eggs and nests -- Nestlings -- Breeding ,Egg (Biology) -- Analysis ,Biological sciences ,Analysis ,Physiological aspects ,Research ,Behavior ,Natural history - Abstract
We found nine nests of the Grey-hooded Parrotbill (Paradoxornis zappeyi) during April through July 2003 at Wawushan Natural Reserve, Sichuan, southwestern China. This report is the first description of the nest sites, nests, eggs, and breeding behavior of this parrothill, and the first documentation of nestling growth from hatching until fledging. The nests were constructed mainly of bamboo (Bashania faberi) leaves, fibrous roots, and moss by both male and female. Nests were bowl shaped and in bamboo thickets 81-122 cm above ground, and 17-68 cm below the top of bamboo leaves. Clutch size was 3.1 eggs (n = 8 nests) and eggs were oval, pale blue in color with a mean mass of 1.3 g. Incubation and provisioning of nestlings were by both parents. The nestling period was 13-14 days with a hatching rate of 0.52 and mean reproductive success rate of 0.48 fledglings per nest., The Grey-hooded Parrotbill (Paradoxornis zappeyi) is a rare Chinese endemic, one of five threatened members of a 10-species avian suite entirely restricted to the Central Sichuan Mountains Endemic Bird Area [...]
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- 2009
5. Breeding success and social mating system of the Bay-capped Wren-Spinetail (Spartonoica maluroides)
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Llambias, Paulo E., Ferretti, Valentina, Cardoni, Daniel A., and Maldonado, Jesus E.
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Birds -- Eggs and nests -- Breeding ,Maluridae -- Behavior -- Natural history -- Physiological aspects -- Distribution ,Courtship of animals -- Research ,Biological sciences ,Company distribution practices ,Distribution ,Physiological aspects ,Analysis ,Research ,Behavior ,Natural history - Abstract
We studied breeding biology, parental roles, and social mating system of the Bay-capped Wren-Spinetail (Spartonoica maluroides), a habitat specialist furnariid, in the Argentinean pampas. We found 42 nests during 2004-2007, two during egg laying, 28 during incubation, and 12 with nestlings. Mean clutch size was 3.17 eggs (n = 29), the incubation period was 13 days, and nestlings remained in the nest for 12 days before fledgling. Bay-capped Wren-Spinetails are socially monogamous; both males and females develop a brood patch and contribute to incubation, brooding, and provisioning of nestlings. Wren-Spinetails are unique among furnariids as they build an open cup nest with a few presenting a loose domed roof. Breeding success of Bay-capped Wren-Spinetails was higher (total probability of nesting success = 0.508) than other species of sympatric passerines because of low nest predation and high nest survival rates during incubation and nestling rearing stages., The members of the Furnariidae (236 described species) inhabit a great diversity of biomes in the Neotropics, including lowland and montane forests, grasslands, salt and fresh water marshes, and rocky [...]
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- 2009
6. Breeding biology of the Purple Swamphen (Porphyrio porphyrio) at Tirunelveli, South India
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Doss, D. Paramanantha Swami, Gopukumar, N., and Sripathi, K.
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Birds -- Eggs and nests -- Nestlings -- Breeding ,Rails (Birds) -- Physiological aspects -- Natural history -- Behavior -- Distribution ,Biological sciences ,Company distribution practices ,Distribution ,Physiological aspects ,Analysis ,Research ,Behavior ,Natural history - Abstract
We studied the breeding biology of Purple Swamphens (Porphyrio porphyrio poliocephalus) at Nainar Pond in Tirunelveli, South India from January 2003 to May 2004. Peak breeding activity occurred from the second week of January to the first week of March. Nests were built on thick floating vegetation closest to the bank of the pond. Nesting material consisted of whole plants, stems, and leaves of Eichhornia crassipes, Jussieua repens, Pistia stratiotes, Ipomoea aquatica, and Cyperus rotundus with E. crassipes being most preferred. Nest dimensions were variable. Clutch size varied from three to seven eggs with a mean ([+ or -] SD) clutch size of 4.5 [+ or -] 1.5 and a model clutch size of four eggs. Mean volume of all eggs was 32.3 [+ or -] 3.5 [cm.sup.3]. The length of the incubation period was estimated as 19.8 [+ or -] 1.2 days. Nest and egg hatching success were estimated as 80.0% and 61.1%, respectively, while overall fledging success was 42.0%., The Purple Swamphen (Porphyrio porphyrio) is a medium sized water bird (Ali 1981) which lives in marshes, lagoons, and reservoirs with appropriate vegetation cover and water depth. Undisturbed areas with [...]
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- 2009
7. Nesting of the Planalto Woodcreeper (Dendrocolaptes platyrostris)
- Author
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Cockle, Kristina L. and Bodrati, A. Alejandro
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Birds -- Nestlings -- Eggs and nests -- Breeding ,Animal ecology -- Research ,Egg (Biology) -- Analysis ,Biological sciences ,Physiological aspects ,Analysis ,Research ,Behavior - Abstract
We provide the first description of the nest, eggs, and nestlings of the Planalto Woodcreeper (Dendrocolaptes platyrostris), a secondary cavity-nester, based on three nests in natural cavities and 14 in nest boxes. Nests were found from October to January in 1997, 2006, and 2007 in the humid Chaco and Atlantic Forest of Argentina. Planalto Woodcreepers used natural cavities and nest boxes 40-60 cm deep with entrance diameters of 5-12 cm. They selected the deepest nest boxes available. Three or four white eggs were laid on a bed of bark flakes and incubated for 14-16 days. Newly hatched nestlings had pink skin with gray down, yellow mouth linings, and large whitish gape flanges. They opened their eyes when 6-7 days of age and fledged at 16-18 days. Nearly all nestlings were infested with botflies (Philornis sp.). Both adults contributed to nest building, incubation, nestling-rearing, and nest sanitation., The woodcreepers are a group of cavity-nesting neotropical birds now recognized by many authors as members of the Furnariidae (Irestedt et al. 2002, 2006; Fjeldsa et al. 2005). They are [...]
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- 2009
8. Habitat use by foraging Northern Harriers on Nantucket Island, Massachusetts
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Massey, Blake H., Griffin, Curtice R., and McGarigal, Kevin
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Nantucket Island -- Natural resources ,Habitat selection -- Research ,Harriers -- Behavior -- Distribution -- Protection and preservation ,Spatial behavior in animals -- Analysis ,Endangered species -- Protection and preservation -- Behavior -- Distribution ,Wildlife conservation -- Research ,Biological sciences ,Company distribution practices ,Distribution ,Analysis ,Protection and preservation ,Research ,Behavior ,Natural resources - Abstract
The Northern Harrier (Circus cyaneus) is of major conservation and management concern in the northeastern United States. We studied habitat use of foraging adult male and female harriers on Nantucket Island, Massachusetts among four habitat types: grassland, shrubland, mowed, and burned. Overall, foraging indices were not correlated to nest proximity and harriers foraged significantly less frequently in mowed habitat than in the other habitat types. Management of harrier habitat in the northeastern United States may not exclusively require grasslands, and mowing reduces foraging habitat., Northern Harriers (Circus cyaneus) have been identified as a species of national concern by the U.S. Fish and Wildlife Service (USDI 2002), and populations have declined dramatically along the east [...]
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- 2009
9. Genetic differentiation between sympatric and allopatric wintering populations of Snow Geese
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Humphries, Elizabeth M., Peters, Jeffrey L., Jonsson, Jon E., Stone, Roger, Afton, Alan D., and Omland, Kevin E.
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Wildlife management -- Research ,Birds -- Breeding ,Snow goose -- Genetic aspects -- Behavior -- Control ,Genetic variation -- Analysis ,Mitochondrial DNA -- Comparative analysis ,Biological sciences ,Control ,Analysis ,Genetic aspects ,Research ,Behavior ,Comparative analysis - Abstract
ABSTRACT.--Blackwater National Wildlife Refuge on the Delmarva Peninsula, Maryland, USA has been the wintering area of a small population of Lesser Snow Geese (Chen caerulescens caerulescens; LSGO) since the 1930s. Snow Geese primarily pair in wintering areas and gene flow could be restricted between this and other LSGO wintering populations. Winter pair formation also could facilitate interbreeding with sympatric but morphologically differentiated Greater Snow Geese (C. c. atlantica; GSGO).We sequenced 658 bp of the mitochondrial DNA control region for 68 Snow Geese from East Coast and Louisiana wintering populations to examine the level of genetic differentiation among populations and subspecies. We found no evidence for genetic differentiation between LSGO populations but, consistent with morphological differences, LSGO and GSGO were significantly differentiated. We also found a lack of genetic differentiation between different LSGO morphotypes from Louisiana. We examined available banding data and found the breeding range of Delmarva LSGO overlaps extensively with LSGO that winter in Louisiana, and documented movements between wintering populations. Our results suggest the Delmarva population of LSGO is not a unique population unit apart from Mid-Continent Snow Geese., A small population of Lesser Snow Geese (Chen caerulescens caerulescens; LSGO) has been wintering on the Delmarva Peninsula on the east coast of the United States, mostly at Blackwater National [...]
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- 2009
10. Intra- and intersexual functions of singing by male Blue Grosbeaks: the role of within-song variation
- Author
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Lattin, Christine and Ritchison, Gary
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Social behavior in animals -- Research ,Sexual behavior in animals -- Research ,Animal communication -- Research ,Grosbeaks -- Behavior ,Biological sciences ,Analysis ,Research ,Behavior - Abstract
Songs of individual male Blue Grosbeaks (Passerina caerulea) typically begin with the same combination of elements, but the sequence and number of elements in the latter portion of songs vary. We examined the possible functions of within-song variation in Blue Grosbeaks at the Blue Grass Army Depot near Richmond, Kentucky, USA from 15 April to 31 July 2007. We examined singing rates and song characteristics of second-year (SY; n = 6) and after-second-year (ASY; n = 14) males, and conducted playback experiments (n = 15) to identify the possible function of variation in song length. Male Blue Grosbeaks sang at highest rates prior to pairing, maintained relatively high singing rates during the post-pairing/pre-nesting and nest-building/egg-laying stages, and sang at lower rates during the incubation, nestling, and fledgling stages. These results suggest high singing rates are important in attracting mates and establishing territories, and lower singing rates may result from trade-offs associated with parental care. Males used longer songs during aggressive encounters with conspecifics and responded more aggressively to playback of longer songs. This suggests songs containing more elements signal increased aggression. Within-song variation may be an important way to vary song meaning for male Blue Grosbeaks, and perhaps other males in species with a single song type but repertoires of several different song elements., Singing by male songbirds serves a variety of functions, ranging from establishing territories and attracting mates (Smith 1991) to distracting predators (Ritchison 1991), communicating with young (Beecher 1990), coordinating nest [...]
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- 2009
11. Taxonomy of the Loggerhead Kingbird (Tyrannus caudifasciatus) complex (aves: tyrannidae)
- Author
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Garrido, Orlando H., Wiley, James W., and Reynard, George B.
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Zoology -- Identification and classification ,Animal vocalization -- Analysis ,Tyrant flycatchers -- Identification and classification -- Distribution -- Behavior -- Physiological aspects ,Biological sciences ,Company distribution practices ,Identification and classification ,Distribution ,Physiological aspects ,Analysis ,Research ,Behavior - Abstract
We examined the complex of populations of the Loggerhead Kingbird (Tyrannus caudifasciatus), a West Indian endemic. We separate populations in Puerto Rico and Isla Vieques (T. taylori), and Hispaniola (T. gabbii) as distinct species. Subspecific distinction is assigned to populations in Cuba, Isla de Pinos, and Cuban satellites (T. caudifasciatus caudifasciatus); Cayman Islands (T. c. caymanensis); Jamaica (T. c. jamaicensis); and the Bahamas (T. c. bahamensis) on the basis of differences in plumage coloration and pattern, size, vocalizations, and distribution., The Loggerhead Kingbird (Tyrannus caudifasciatus) is endemic to the Bahama Islands and Greater Antilles, although occasionally stragglers have been reported in southern Florida (Bond 1978:3, Robertson and Woolfenden 1992, AOU [...]
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- 2009
12. Acoustic differences between the Scoters Melanitta nigra nigra and M. n. americana
- Author
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Sangster, George
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Birds -- Breeding ,Animal vocalization -- Comparative analysis ,Ducks -- Behavior -- Comparative analysis ,Variation (Biology) -- Analysis ,Biological sciences ,Analysis ,Research ,Behavior ,Comparative analysis - Abstract
Scoter vocalizations may have a role in pair formation and pair bonding. I compared the courtship calls of male Black Scorers (Melanitta nigra nigra and M. n. americana) using published and archived recordings. Courtship calls of the two subspecies differed diagnosably in duration. In contrast, recordings from different localities within the ranges of each taxon showed no diagnosable differentiation. This finding represents the first indication these taxa differ in characters other than bill morphology and supports recent proposals to treat M. n. americana as a distinct species (M. americana). Vocal displays, in contrast to courtship displays, of anatids have not been used for assessment of species limits in Anatidae. My results indicate vocalizations are a potentially useful additional character in species-level taxonomy of anatids., Courtship displays of anatids have attracted substantial attention from behavioral scientists (e.g., Heinroth 1911, Lorenz 1951-1953, Johnsgard 1965), and interspecific variation has been analysed and interpreted in an evolutionary context [...]
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- 2009
13. Reproduction and microhabitat selection in a sharply declining Northern Bobwhite population
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Collins, Bridget M., Williams, Christopher K., and Castelli, Paul M.
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Habitat selection -- Analysis ,Birds -- Breeding ,Wildlife conservation -- Research ,Bobwhite -- Distribution -- Behavior -- Protection and preservation ,Biological sciences ,Company distribution practices ,Distribution ,Analysis ,Protection and preservation ,Research ,Behavior - Abstract
Northern Bobwhite (Colinus virginianus) populations have been declining throughout their range, but some of the sharpest declines have been documented in the Mid-Atlantic states. We conducted a 2 year (2006-2007) breeding season (1 May-30 Sep) telemetry study in southern New Jersey to collect baseline data on Northern Bobwhite reproductive rates, and nest and brood microhabitat selection. We located 23 Northern Bobwhite nests, of which 21 were usable for survival analyses. Incubation-period nest survival rate was 0.454 [+ or -] 0.010 (95% CI = 0.280-0.727). Mean clutch size was 14.2 [+ or -] 0.58 (range 10-19, n = 20) and hatching success was 96.1 [+ or -] 2.0% (range 86-100%, n = 10). The estimated probability that an individual that entered the breeding season would initiate incubation of [greater than or equal to] 1 nest was 0.687 for females and 0.202 for males. Nest microhabitat selection was positively related to visual obstruction and percentage of litter. Brood microhabitat selection was positively related to visual obstruction, vegetation height, and percentage of forbs but negatively related to percentage of cool season grass and litter. Fecundity metrics for Northern Bobwhites in southern New Jersey appear similar to those reported elsewhere in the species' range. Conservation efforts to increase Northern Bobwhite reproductive success in southern New Jersey should focus on increasing the quantity of available breeding habitat., Northern Bobwhite (Colinus virginianus) populations have been declining throughout most of their range (Sauer et al. 2008). Some of the most marked declines in Northern Bobwhite populations are occurring at [...]
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- 2009
14. Actin polymerization is controlled by residue size at position 204
- Author
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Yates, Susan P., Loncar, Ana, and Dawson, John F.
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Polymerization -- Analysis -- Physiological aspects -- Research -- Health aspects ,Adenosine triphosphatase -- Research -- Physiological aspects -- Analysis -- Health aspects ,Muscle proteins -- Physiological aspects -- Research -- Analysis -- Health aspects ,Actin -- Health aspects -- Analysis -- Research -- Physiological aspects ,Biological sciences ,Physiological aspects ,Analysis ,Research ,Health aspects - Abstract
Previous work has shown that purified double mutant A204C/C374A yeast actin is polymerization-deficient in vitro under physiological concentrations. To understand the importance of the 204 residue in subdomain 4, a series of actin proteins with a single mutation at this position were created with Cys-374 retained. Only yeast expressing A204G-, A204S-, or A204C-actin were viable. The A204G and A204S strains were sensitive to cold temperature and hyperosmolarity, whereas the A204C strain showed more profound effects on growth under these conditions. Cells expressing A204Cactin exhibited anomalies previously observed for A204C/C374A actin, including abnormal actin structures. A204G- and A204S-actin proteins had 12- and 13-fold increased critical concentrations, respectively, relative to wild-type. Only at very high concentrations could A204C actin polymerize when ATP was bound; when hydrolyzed, the ADP-containing A204C filaments depolymerized, demonstrating a profound difference in critical concentration between ATP and ADP states with A204C actin. A correlation between size of the residue substituted at position 204 and energy minimization of actin filament models was observed. We propose that the region surrounding residue 204 is involved in interactions that change depending on the phosphorylation state of the bound nucleotide that might reflect different conformations of F-actin subunits. Key words: actin polymerization, mutagenesis, critical concentration, nucleotide. Des travaux anterieurs ont montre que le double mutant purifie A204C/C374A de l'actine de levure possede un defaut de polymerisation in vitro sous des conditions physiologiques. Afin de comprendre l'importance du residu 204 du sous-domaine 4, une serie de proteines comportant une mutation ponctuelle a cette position ont ete produites, en conservant la Cys-374. Seules les levures exprimant les formes A204G, A204S ou A204C de l'actine etaient viables. Les souches A204G et A204S etaient sensibles au froid et a l'hyperosmolarite, alors que la souche A204C montrait des problemes de croissance plus prononces sous ces conditions. Les cellules exprimant l'actine A204C montraient des anomalies deja observe es chez les cellules exprimant la forme A204C/C374A, incluant des structures anormales d'actine. Les proteines A204G et A204S possedaient des concentrations critiques respectivement 12 et 13 fois superieures, relativement au type sauvage. L'actine A204C ne polymerisait qu'a tres haute concentration lorsque l'ATP etait liee; apres hydrolyse, les filaments d'actine A204C contenant l'ADP depolymerisaient, demontrant l'existence d'une difference importante dans les concentrations critiques des formes liees a l'ATP et a l'ADP de l'actine A204C. Une correlation entre la taille des residus substitues en position 204 et la minimisation d'energie des modeles de filaments d'actine a ete observee. Nous proposons que la region environnant le residu 204 est impliquee dans les interactions qui changent selon l'etat de phosphorylation du nucleotide lie, refletant possiblement differentes conformations des sous-unites d'actine. Mots-cles : polymerisation de l'actine, mutagenese, concentration critique, nucleotide. [Traduit par la Redaction], Introduction Actin is a 42 kDa cytoskeletal protein involved in a plethora of physiological processes. Polymerization into long filaments (F-actin) is a fundamental activity of the actin protein. F-actin can [...]
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- 2009
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15. How did indirect development with planktotrophic larvae evolve?
- Author
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Nielsen, Claus
- Subjects
Metazoa -- Natural history -- Research -- Analysis ,Larval development -- Research -- Analysis ,Marine plankton -- Natural history -- Analysis -- Research ,Biological sciences ,Analysis ,Research ,Natural history - Abstract
The two main types of theories for the evolution of the biphasic life cycles in marine invertebrates are discussed. The 'intercalation' theories propose that the larval stages (planktotrophic or lecithotrophic) have evolved as specializations from the ancestral, direct life cycle. The opposing 'terminal addition' theories propose that the ancestor was holopelagic and that the adult stage was added to the life cycle with the pelagic stage retained as a planktotrophic larva. It is emphasized that theories based on hypothetical ancestors that were unable to feed must be rejected. This applies to planula theories based on a compact planula. Various arguments against the theories that consider the feeding larvae as ancestral in the major eumetazoan lineages and in particular against the trochaea theory are discussed and found untenable. It is suggested that the 'Cambrian explosion' was actually a rapid Ediacaran radiation of the eubilaterians that was made possible by the evolution of a tubular gut with all the resulting possibilities for new body plans. We have irrefutable proof in support of the pelagic larval life as an original feature. ... This is so well documented that it would he superfluous to enter into the matter more closely, were it not for its great importance and the fact that there exist authors, who still assert that direct development is the original condition (Jagersten, 1972, p. 3)., Introduction In general, two main views have dominated recent discussions of animal life-cycle evolution, and specifically of that of the marine bilaterians. Either the ancestor was holopelagic (and therefore planktotrophic) [...]
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- 2009
16. Evidence for costs of mating and self-fertilization in a simultaneous hermaphrodite with hypodermic insemination, the opisthobranch Alderia willowi
- Author
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Smolenksky, Nicole, Romero, Melissa R., and Krug, Patrick J.
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Sea slugs -- Physiological aspects -- Analysis -- Methods -- Research ,Hermaphroditism -- Analysis -- Research -- Physiological aspects -- Methods ,Oviposition -- Research -- Methods -- Analysis -- Physiological aspects ,Fertilization (Biology) -- Methods -- Physiological aspects -- Research -- Analysis ,Biological sciences ,Physiological aspects ,Analysis ,Research ,Methods - Abstract
Simultaneous hermaphrodites offer the chance to study antagonistic coevolution between the sexes when individuals function in both roles. Traumatic mating by hypodermic insemination has repeatedly evolved in hermaphroditic taxa, but evidence for the fitness costs of such male-advantage traits is lacking. When reared in isolation, specimens of the sea slug Alderia willowi (Opisthobranchia: Sacoglossa) initially laid clutches of unfertilized eggs but 4 days later began self-fertilizing; this is only the third report of selfing inan Alderia if penetration of the body wall bypasses internal mechanisms that promote outcrossing. Selfing specimens and slugs reared inpairs had reduced fecundity compared to isolated slugs laying unfertilized clutches, suggesting that hypodermic insemination imposes a cost of mating. Egg production increased for field-caught slugs separated after mating compared to slugs held in pairs, a further indication that accessibility to mates imposes a fitness cost to the female function. Such antagonism can confer a competitive advantage to slugs mating in the male role but diminish reproduction in the female role among hermaphrodites capable of long-term sperm storage. Alderia willowi is also a rare case of poecilogony, with adults producing either plankitotrophic or lecithotrophic larvae. Our rearing studies revealed that most slugs switched between expressed development models at some point; such reproductive flexibility within individuals is unprecedented, even among poecilogonous species., Introduction Sexually antagonistic traits that confer a male advantage are commonplace in animals (Rice, 1996; Partridge and Hurst, 1998; Arnqvist and Rowe, 2005). Physical features include genital armature and other [...]
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- 2009
17. The canonical network of autotrophic intermediary metabolism: minimal metabolome of a reductive chemoautotroph
- Author
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Srinivasan, Vijayasarathy and Morowitz, Harold J.
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Metabolites -- Research -- Analysis -- Comparative analysis ,Krebs cycle -- Analysis -- Comparative analysis -- Research ,Autotrophs -- Comparative analysis -- Natural history -- Research -- Analysis ,Biological sciences ,Analysis ,Research ,Comparative analysis ,Natural history - Abstract
Chemoautorophs that fix carbon by the reductive tricarboxylic acid cycle represent one of the dominant bacterial life forms that make a major contribution to bio-mass production. From the viewpoint of biogenesis, construction of a canonical chart of intermediary metabolism for this class of organisms may help us to understand early cellular evolution and point us to the last universal common ancestor. Data-mining the KEGG Pathways database enabled us to integrate required biosynthetic pathways and derive a chart that represents the complete anabolic network of a reductive chemoautotroph. Compounds of this metabolic network together constitute a representative minimal metabolome that comprises 287 metabolites. These compounds have been classified into different groups including those compounds that form nodes in the network. It can be seen that a relatively sparse set of organic chemical reactions dominate the anabolic synthesis in the assembly of the minimal autotrophic metabolome. Empirical generalizations that result from analyzing this metabolic network may aid in elucidating selection rules that govern its emergence and further evolution and may also help in delineating attributes that impart the observed robustness to these metabolites., Introduction Metabolic charts have been a central feature in the study of biochemistry since Donald Nicholson developed his first Metabolic Pathways Chart in 1955 (Nicholson, 2006). A printed version was [...]
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- 2009
18. Morphological and ecological relationships between burrs and furs
- Author
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Kulbaba, Mason W., Tardif, Jacques C., and Staniforth, Richard J.
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Seeds -- Dispersal ,Botany -- Morphology ,Plants -- Migration ,Phanerogams -- Distribution -- Natural history -- Research -- Analysis -- Methods ,Biological sciences ,Earth sciences ,Company distribution practices ,Distribution ,Analysis ,Research ,Natural history ,Methods - Abstract
Epizoochory is the mode of seed dispersal where a diaspore (disseminating plant propagule) is disseminated on the external surface of an animal. While the structures that facilitate diaspore adherence are diverse, epizoochory is considered to be relatively rare (approximately 10% of angiosperms), but is commonly utilized by several invasive plant species. We experimentally sought species specific associations between the adherence and retention of eight common plant species' diaspores and five mammalian furs, plus human clothing. We sought relationships between both fur and diaspore characteristics in both the adherence and retention of diaspores. Diaspores of Geum aleppicum were the only ones interacting significantly better with one kind of substrate (mouse fur) than diaspores of all other plant species by being retained well in mouse fur. Alternatively, bison fur behaved as a 'generalist' disperser, by consistently accommodating the adherence and retention of a wide range of diaspore morphologies. Finally, exotic plant species displayed a higher tendency than natives to adhere to a variety of mammal fur types, indicating a more flexible dispersal strategy for the invasive habit., INTRODUCTION Effective dispersal by plants is attained if propagules reach habitats favorable for survival, growth and reproduction (Stamp, 1989). Ridley (1930) recognized anemochory (dispersal by wind), hydroehory (dispersal by water) [...]
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- 2009
19. Effect of removal of Hesperis matronalis (dame's rocket) on species cover of forest understory vegetation in NW Indiana
- Author
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Pavlovic, Noel B., Leicht-Young, Stacey A., Frohnapple, Krystalynn J., and Grundel, Ralph
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Cruciferae -- Analysis -- Research ,Population ecology -- Analysis -- Research ,Plant populations -- Research -- Analysis ,Biological sciences ,Earth sciences ,Analysis ,Research - Abstract
Exotic invasive plant species differ in their effects on indigenous vegetation as evidenced by research evaluating community response to their removal. We used a removal approach to quantify the response of a mesic woodland to the removal versus retention of an invasive plant, Hesperis matronalis (dame's rocket) from paired treatment plots over 3 y. Cover of H. matronalis did not differ between control and treatment plots prior to removal, declined in the removal plots and remained significantly lower in cover compared to the control plots. Removal did not significantly affect species richness and species diversity (evenness, Shannon and Simpson) at the plot scale, but did result in increased species richness overall in the removal plots in the last sampling year when compared to control plots. Non-metric multidimensional scaling ordination analysis indicated a significant compositional change in the spring plant composition of plots over the 3 y, reflecting an increase in exotic woody species. Exotic woody plants, especially Rosa multiflora and Euonymus alatus, increased in cover in response to H. matronalis removal. In the 3 y, neither native nor exotic forbs, nor native woody plants responded to the removal of H. matronalis in a statistically significant manner. The increasing cover of woody invasive plants in response to the removal of H. matronalis has important management implications for restoration of degraded communities., INTRODUCTION A major issue in prescribing management for control of exotic invasive plant species in disturbed or degraded natural areas is the potential response of the existing plant community to [...]
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- 2009
20. Grassland bird use of remnant prairie and conservation reserve program fields in an agricultural landscape in Wisconsin
- Author
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Ribic, Christine A., Guzy, Michael J., and Sample, David W.
- Subjects
Wisconsin -- Natural resources ,Spatial behavior in animals -- Research -- Analysis ,Bird populations -- Analysis -- Research ,Passeriformes -- Analysis -- Research ,Grassland ecology -- Research -- Analysis ,Biological sciences ,Earth sciences ,Analysis ,Research ,Natural resources - Abstract
Because of the declines in grassland bird populations across North America, many state and federal agencies are making efforts to manage for grassland bird populations, particularly in a landscape context. To effectively manage for grassland birds, we need to understand how grassland bird species use different habitat types within landscapes. We determined the densities of grassland birds in remnant prairie patches and Conservation Reserve Program (CRP) fields and compared those to managed agricultural habitat types (pastures, alfalfa hay and strip crop fields). We also investigated whether densities were associated with landscape features. This study took place in the Military Ridge Prairie Heritage Area (MRPHA) in southwestern Wisconsin May-Jul. 2002 and 2003. Land use in the MRPHA is primarily agricultural, with a relatively large portion of the land in pasture, troy, small grains and idle grasslands enrolled in CRP and relatively few acres of corn and soybeans compared to other areas of the state. This area also has numerous remnant prairie patches. We used line transect surveys to measure species density in the different habitat types. The five most common grassland species in the study area were bobolink (Dolichonyx oryzivorus), eastern meadowlark (Sturnella magna), grasshopper sparrow (Ammodramus savannarum), Henslow's sparrow (A. henslowii) and Savannah sparrow (Passerculus sandwichensis). Densities did not differ between years. Habitat type was the most important factor associated with species density. Bobolink densities were greatest in hay fields, followed by CRP fields. Eastern meadowlark densities were greatest in CRP fields, remnant prairie patches and pastures. Grasshopper sparrow densities were greatest in remnant prairie, Henslow's sparrow densities were greatest in CRP fields and remnant prairie and Savannah sparrow densities were greatest in pasture and hay fields. There was no evidence that densities of any of the grassland species increased with site size within habitat type. Only bobolink and eastern meadowlark were associated with a landscape variable; both species' densities in the field were positively associated with proportion of grassland within 200 m of the site. When managing for grassland birds in a landscape with a large amount of grassland, a diversity of habitat types will be needed to conserve grassland birds as a group., INTRODUCTION In Wisconsin, 12 of 14 obligate grassland species (those that require open grasslands for breeding and do not require woody vegetation; Sample and Mossman [1997]) have shown significant declines [...]
- Published
- 2009
21. Ecological characteristics of small mammal communities at a superfund site
- Author
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Phelps, Kendra L. and McBee, Karen
- Subjects
Rodents -- Observations -- Research -- Analysis ,Spatial behavior in animals -- Research -- Analysis ,Habitat (Ecology) -- Analysis -- Research ,Hazardous waste sites -- Analysis -- Research ,Biological sciences ,Earth sciences ,Observations ,Analysis ,Research - Abstract
Wildlife species can serve as biomonitors of environmental health and are prognostic of ecotoxicological consequences when contaminants are introduced into the environment. Small mammals, particularly rodents, comprise the majority of indicator species used in terrestrial biomonitoring studies; however, many biomonitoring studies address acute effects over relatively short periods. We still know little regarding effects of chronic exposure to contaminants on small mammals. The overall goal of this study was to determine ecological characteristics of small mammal communities inhabiting a heavy metal contaminated site, Tar Creek Superfund Site, compared to reference sites located in northeastern Oklahoma over a 2 y timeframe. Primary hazardous materials present at Tar Creek Superfund Site include lead, zinc and cadmium. Mark-recapture techniques were employed to test the hypothesis that structure and composition of small mammal communities inhabiting this contaminated site would be significantly altered compared to uncontaminated reference sites. Contaminated and reference sites were similar in vegetation compositional characteristics. Small mammal communities inhabiting Tar Creek Superfund Site had reduced species diversity, including richness and evenness, compared to reference sites. Furthermore, communities within Tar Creek Superfund Site were dominated by a single species, Peromyscus leucopus (white-footed mouse). Species composition was different between contaminated sites and reference sites as evidenced by detrended correspondence analysis, with contaminated sites being more similar to each other than to either reference site. No direct link between site contamination and disparities among most ecological characteristics could be established., INTRODUCTION Tar Creek Superfund Site (TCSFS), in Ottawa Co., Oklahoma, is one of three superfund sites located in the Tri-State Mining District, an 800 [km.sup.2] area extending into portions of [...]
- Published
- 2009
22. Genetic variation and structure of the people of Uttarakhand, Central Himalayas, India
- Author
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Chahal, S.M.S., Singh, Parminder, Singh, Harjit, Bansal, Rupinder, and Bansal, I.J.S.
- Subjects
Himalaya Mountains -- Social aspects ,Genetic populations -- Research -- Social aspects -- Analysis ,Population genetics -- Research -- Analysis -- Social aspects ,Genetic variation -- Analysis -- Social aspects -- Research ,Biological sciences ,Social aspects ,Analysis ,Research - Abstract
The Indian Himalayas, being semi-isolated geographically, provide ideal conditions for population genetics investigations. The main aim of this study is to genetically characterize and analyze the genetic structure of the people of Uttarakhand, a newly created North Indian hill state in the Central Himalayas, using original phenotype and allele-frequency data on a battery of seven red cell enzyme polymorphisms. For this analysis, blood samples were collected from 3,222 unrelated subjects belonging to various endogamous caste populations (Brahmin, Rajput, and Shilpkar) and tribal Bhotia inhabiting seven different districts in the Garhwal (northern) and Kumaon (southern) regions of Uttarakhand. Hemolysates were typed for isozymes of ESD, PGM1, ADA, AK1, GLO1, ACP1, and GPI using standard electrophoretic techniques. The genetic structure of these regional caste and tribal population groups was investigated with the help of different statistical measures. The present biochemical marker results show that the overall genetic constitution of the different populations of Uttarakhand is rather heterogeneous but similar to that of various caste and tribal populations of the neighboring hill state of Himachal Pradesh, situated on Uttarakhand's western border. The extent of genic differentiation observed in different contemporary populations of Garhwal was twice as high as that of Kumaon. Interestingly, in genetic distance dendrograms of both the regions and of all of Uttarakhand, all the Shilpkar groups are differentiated from the remaining groups of Brahmin, Rajput, and Bhotia. The genetic constitution of the Shilpkar (a scheduled caste population of Uttarakhand) and to a lesser extent that of the Bhotia (a scheduled tribe population of Uttarakhand) are rather different from both the Brahmin and Rajput high-caste populations, which tend to show genetic similarities between them. These observations are corroborated by the known ethnohistory of different populations of Uttarakhand. KEY WORDS: RED CELL ENZYME POLYMORPHISMS, ESD, PGM1, ADA, AK1, GLO1, ACP1, GPI, CASTE POPULATIONS, TRIBAL POPULATIONS, UTTARAKHAND, CENTRAL HIMALAYAS., Anthropologically, the people of India, numbering over 1 billion, exhibit not only a wide variety of ethnic elements but also great cultural and linguistic diversity. The hierarchical caste system that [...]
- Published
- 2008
23. Substructure of a Tunisian Berber population as inferred from 15 autosomal short tandem repeat loci
- Author
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Khodjet-El-Khil, Houssein, Fadhlaoui-Zid, Karima, Gusmao, Leonor, Alves, Cintia, Benammar-Elgaaied, Amel, and Amorim, Antonio
- Subjects
Population genetics -- Research -- Analysis -- Genetic aspects ,Chromosomes -- Properties -- Analysis -- Genetic aspects -- Research ,Fibrin -- Genetic aspects -- Analysis -- Research ,Genetic drift -- Analysis -- Genetic aspects -- Research ,Berbers -- Genetic aspects -- Analysis -- Research ,Biological sciences ,Analysis ,Genetic aspects ,Research ,Properties - Abstract
Currently, language and cultural practices are the only criteria to distinguish between Berber autochthonous Tunisian populations. To evaluate these populations' possible genetic structure and differentiation, we have analyzed 15 autosomal short tandem repeat loci (CSF1PO, D3S1358, D5S818, D7S820, D8S1179, D13S317, D16S539, D18S51, D21S11, FGA, TH01, TPOX, VWA, D2S1338, and D19S433) in three southern Tunisian Berber groups: Sened, Matmata, and Chenini-Douiret. The exact test of population differentiation based on allele frequencies at the 15 loci shows significant P values at 7 loci between Chenini-Douiret and both Sened and Matmata, whereas just 5 loci show significant P values between Sened and Matmata. Comparative analyses between the three Berber groups based on genetic distances show that P values for [F.sub.ST] distances are significant between the three Berber groups. Population analysis performed using Structure shows a clear differentiation between these Berber groups, with strong genetic isolation of Chenini-Douiret. These results confirm at the autosomal level the high degree of heterogeneity of Tunisian Berber populations that had been previously reported for uniparental markers. KEY WORDS: STR, CSF1PO, D3S1358, D5S818, D7S820, D8S1179, D13S317, D16S539, D18S51, D21S11, FGA, TH01, TPOX, VWA, D2S1338, D19S433, BERBERS, POPULATION STRUCTURE, TUNISIA, NORTH AFRICA., Tunisian history records many and diverse population settlements. Tunisia was invaded from the first millennium b.c. until the 7th century A.D. by Phoenicians, Romans, Vandals, and Byzantines. These incursions seem [...]
- Published
- 2008
24. Characterization of osteoblastic properties of 7F2 and UMR-106 cultures after acclimation to reduced levels of fetal bovine serum
- Author
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Ganguly, S., Ashley, L.A., Pendleton, C.M., Grey, R.D., Howard, G.C., Castle, L.D., Peyton, D.K., Fultz, M.E., and DeMoss, D.L.
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Osteoblasts -- Research -- Analysis -- Health aspects ,Skeletal maturity -- Research -- Health aspects -- Analysis ,Estrogen -- Analysis -- Health aspects -- Research ,Hormone research -- Research -- Health aspects -- Analysis ,Biological sciences ,Analysis ,Research ,Health aspects - Abstract
Abstract: Estrogen plays an important role in skeletal physiology by maintaining a remodeling balance between the activity of osteoblasts and osteoclasts. In an attempt to decipher the mechanism through which [...]
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- 2008
25. Staurosporine aglycone bilaterally regulates ERK1/2 phosphorylation in rat pulmonary arterial smooth muscle cells
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Protein kinases -- Analysis -- Research ,Phosphorylation -- Research -- Analysis ,Cellular control mechanisms -- Research -- Analysis ,Vascular smooth muscle -- Research -- Analysis ,Biological sciences ,Analysis ,Research - Abstract
Abstract: Staurosporine, a protein kinase C (PKC) inhibitor, has been reported to regulate the phosphorylation of ERK1/2 in several cell lines. It is still unknown, however, whether its derivative staurosporine [...]
- Published
- 2008
26. Fatty acid synthesis and generation of glycerol-3-phosphate in brown adipose tissue from rats fed a cafeteria diet
- Author
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Chaves, Valeria E., Frasson, Danubia, Martins-Santos, Maria E.S., Navegantes, Luiz C.C., Galban, Victor D., Garofalo, Maria A.R., Kettelhut, Isis C., and Migliorini, Renato H.
- Subjects
Fatty acids -- Synthesis ,Phosphoenolpyruvate carboxykinase -- Analysis -- Health aspects -- Research ,Brown adipose tissue -- Analysis -- Research -- Health aspects ,Biological sciences ,Analysis ,Research ,Health aspects - Abstract
Abstract: In vivo fatty acid synthesis and the pathways of glycerol-3-phosphate (G3P) production were investigated in brown adipose tissue (BAT) from rats fed a cafeteria diet for 3 weeks. In [...]
- Published
- 2008
27. New and current microbiological tools for ecosystem ecologists: towards a goal of linking structure and function
- Author
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Drenovsky, Rebecca E., Feris, Kevin P., Batten, Katharine M., and Hristova, Krassimira
- Subjects
Ecosystems -- Research -- Analysis ,Soil microbiology -- Research -- Analysis ,Methodology -- Analysis -- Research ,Biological sciences ,Earth sciences ,Analysis ,Research - Abstract
Interest in the relationships between soil microbial communities and ecosystem functions is growing with increasing recognition of the key roles microorganisms play in a variety of ecosystems. With a wealth of microbial methods now available, selecting the most appropriate method can be daunting, especially to those new to the field of microbial ecology. In this review, we highlight those methods currently used and most applicable to ecological studies, including assays to study various aspects of the carbon and nitrogen cycles (e.g., pool dilution, acetylene reduction, enzyme analyses, among others), methods to assess microbial community composition (e.g., phospholipid fatty acid analysis (PLFA), denaturing gradient gel electrophoresis (DGGE), terminal restriction fragment length polymorphism analysis (TRFLP), quantitative polymerase chain reaction (qPCR)) and methods to directly link community structure to function (e.g., stable isotope probing (SIP)). In our discussion of these methods, we describe the information each method provides, as well as some of their strengths and weaknesses. Using a case study, we illustrate how these methods can be applied to investigate relationships between microbial communities and the processes they perform in wetland ecosystems. We end our discussion with a series of questions to consider prior to designing experiments, in the hope that these questions will help guide ecologists in selecting the most appropriate method(s) for their research., INTRODUCTION Over the past 20 y, the variety of methods available to ecosystem and microbial ecologists has dramatically increased. At the same time, interest in soil microorganisms and the ecosystem [...]
- Published
- 2008
28. Structure of the 0-polysaccharide of the lipopolysaccharide produced by Taylorella asinigenitalis type strain (ATCC 700933)
- Author
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Vinogradov, Evgeny, MacLean, Leann L., Brooks, Brian W., Lutze-Wallace, Cheryl, and Perry, Malcolm B.
- Subjects
Microbial polysaccharides -- Production processes -- Structure -- Analysis -- Genetic aspects -- Methods -- Usage -- Research ,Burkholderia -- Usage -- Genetic aspects -- Research -- Analysis -- Methods ,Polymerase chain reaction -- Usage -- Methods -- Research -- Analysis -- Genetic aspects ,Biological sciences ,Production processes ,Structure ,Usage ,Analysis ,Research ,Genetic aspects ,Methods - Abstract
Abstract: Taylorella asinigenitalis sp. nov is a nonpathogenic gram-negative bacterium recently isolated from the genital tract of male donkeys. The bacterium is phenotypically indistinguishable from Taylorella equigenitalis, a pathogen that [...]
- Published
- 2008
29. Substrate and vegetation selection by nesting Piping Plovers
- Author
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Cohen, Jonathan B., Wunker, Elizabeth H., and Fraser, James D.
- Subjects
Birds -- Eggs and nests ,Coastal ecosystems -- Analysis -- Behavior -- Research ,Vegetation and climate -- Research -- Analysis ,Biological sciences ,Analysis ,Research ,Behavior - Abstract
We studied substrate composition and vegetation cover at Piping Plover (Charadrius melodusl nests and paired random plots on New York beaches that had been widened by renourishment (deposition of dredged sand). Most nests (59.4%, n = 32) were in unvegetated plots, mean ± SE vegetative cover around nests was 7.5 ± 1.7%, and all plovers nested in, Piping Plovers (Charadrius melodus) selecting nest sites on Atlantic Coast beaches must balance the risks of tidal flooding and egg predation (Burger 1987). They scrape nests in bare or sparsely-vegetated [...]
- Published
- 2008
30. Who's helped by help-sessions in introductory science courses?
- Author
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Moore, Randy
- Subjects
Academic achievement -- Research -- Methods -- Analysis ,Remedial teaching -- Demographic aspects -- Influence -- Methods -- Analysis -- Research ,Sciences education -- Methods -- Analysis -- Research ,School attendance -- Influence -- Methods -- Analysis -- Research ,Motivation in education -- Analysis -- Research -- Methods ,Biological sciences ,Education ,Influence ,Analysis ,Research ,Demographic aspects ,Methods - Abstract
The academic success of students in introductory science courses is influenced by a variety of factors, the most important of which is academic motivation (Moore, 2005, 2006, 2007; Thomas & [...]
- Published
- 2008
31. Ribosomal synthesis of nonstandard peptides (1)
- Author
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Suga, Hiroaki
- Subjects
Aminoacyl-tRNA -- Analysis -- Methods -- Research ,Genetic translation -- Research -- Analysis -- Methods ,Protein biosynthesis -- Methods -- Analysis -- Research ,Antibiotics -- Research ,Biological sciences ,Analysis ,Research ,Methods - Abstract
Abstract: It is well known that standard peptides, which comprise proteinogenic amino acids, can act as specific chemical probes to target proteins with high affinity. Despite this fact, a number [...]
- Published
- 2008
32. Reorganization of the Suprachiasmatic Nucleus Coding for Day Length
- Author
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Naito, Emiko, Watanabe, Tsuyoshi, Tei, Hajime, Yoshimura, Takashi, and Ebihara, Shizufumi
- Subjects
Gene expression -- Health aspects -- Research -- Physiological aspects -- Genetic aspects -- Analysis ,Suprachiasmatic nucleus -- Physiological aspects -- Genetic aspects -- Research -- Analysis -- Health aspects ,Circadian rhythms -- Analysis -- Physiological aspects -- Health aspects -- Research -- Genetic aspects ,Biological sciences ,Analysis ,Physiological aspects ,Genetic aspects ,Research ,Health aspects - Abstract
Byline: Emiko Naito (Division of Biomodeling, Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Japan); Tsuyoshi Watanabe (Division of Biomodeling, Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Japan); Hajime [...]
- Published
- 2008
- Full Text
- View/download PDF
33. Photoperiodic Induction of Diapause Requires Regulated Transcription of timeless in the Larval Brain of Chymomyza costata
- Author
-
Stehlik, J., Zavodska, R., Shimada, K., Sauman, I., and Kostal, V.
- Subjects
Gene mutations -- Complications and side effects -- Research -- Analysis -- Genetic aspects ,Diptera -- Genetic aspects -- Research -- Analysis ,Diapause -- Analysis -- Genetic aspects -- Research ,Biological sciences ,Complications and side effects ,Analysis ,Research ,Genetic aspects - Abstract
Byline: J. Stehlik (Institute of Entomology, Biology Centre AS CR, Ceske Budejovice, Czech Republic, Faculty of Science, University of South Bohemia, Ceske Budejovice, Czech Republic); R. Zavodska (Institute of Entomology, [...]
- Published
- 2008
- Full Text
- View/download PDF
34. Mitochondrial monolysocardiolipin acyltransferase is elevated in the surviving population of H9c2 cardiac myoblast cells exposed to 2-deoxyglucose-induced apoptosis
- Author
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Danos, Maria, Taylor, William A., and Hatch, Grant M.
- Subjects
Gene expression -- Research -- Analysis ,Cardiolipin -- Analysis -- Research ,Mitochondrial membranes -- Analysis -- Research ,Apoptosis -- Research -- Analysis ,Lipid metabolism -- Analysis -- Research ,Biological sciences ,Analysis ,Research - Abstract
Abstract: Cardiolipin (CL) is a major mitochondrial membrane phospholipid in the mammalian heart and the remodeling of CL is essential to maintain its unique unsaturated fatty acyl composition. We examined [...]
- Published
- 2008
35. Understanding exercise behaviour during home-based cardiac rehabilitation: a theory of planned behaviour perspective (1)
- Author
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Blanchard, Christopher
- Subjects
Exercise -- Methods -- Health aspects -- Research -- Analysis ,Biological sciences ,Company business management ,Management ,Analysis ,Research ,Methods ,Health aspects - Abstract
Abstract: Although home-based cardiac rehabilitation (CR) programs have been shown to produce significant increases in exercise capacity, obtaining patient adherence to these programs has been challenging. It is therefore critical [...]
- Published
- 2008
36. Neuroecology, chemical defense, and the keystone species concept
- Author
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Zimmer, Richard K. and Ferrer, Ryan P.
- Subjects
Animal behavior -- Analysis -- Case studies -- Study and teaching ,Physiology -- Study and teaching -- Case studies -- Analysis ,Ecosystems -- Research -- Case studies -- Analysis -- Study and teaching ,Neurotoxic agents -- Influence -- Research -- Case studies -- Study and teaching -- Analysis ,Ecology -- Case studies -- Study and teaching -- Analysis ,Biological sciences ,Influence ,Analysis ,Case studies ,Research ,Study and teaching - Abstract
Neuroecology unifies principles from diverse disciplines, scaling from biophysical properties of nerve and muscle cells to community-wide impacts of trophic interactions. Here, these principles are used as a common fabric, woven from threads of chemosensory physiology, behavior, and population and community ecology. The 'keystone species' concept, for example, is seminal in ecological theory. It defines a species whose impacts on communities are far greater than would be predicted from its relative abundance and biomass. Similarly, neurotoxins could function in keystone roles. They are rare within natural habitats but exert strong effects on species interactions at multiple trophic levels. Effects of two guanidine alkaloids, tetrodotoxin (TTX) and saxitoxin (STX), coalesce neurobiological and ecological perspectives. These molecules compose some of the most potent natural poisons ever described, and they are introduced into communities by one, or only a few, host species. Functioning as voltage-gated sodium channel blockers for nerve and muscle cells, TTX and STX serve in chemical defense. When borrowed by resistant consumer species, however, they are used either in chemical defense against higher order predators or for chemical communication as chemosensory excitants. Cascading effects of the compounds profoundly impact community-wide attributes, including species compositions and rates of material exchange. Thus, a diverse array of physiological traits, expressed differentially across many species, renders TTX and STX fully functional as keystone molecules, with vast ecological consequences at multiple trophic levels., Introduction A wide range of critical ecological interactions are mediated by chemistry. Biological responses to environmental chemical stimuli abound. Sensory perception of chemical signals, for example, strongly influences predation (Nevitt [...]
- Published
- 2007
37. Phage Display Screening of Epithelial Cell Monolayers Treated with EGTA: Identification of Peptide FDFWITP that Modulates Tight Junction Activity
- Author
-
Herman, Richard E., Makienko, Ekaterina G., Prieve, Mary G., Fuller, Mark, Houston, JR, Michael E., and Johnson, Paul H.
- Subjects
Screens -- Methods -- Usage -- Analysis ,Peptides -- Identification and classification -- Health aspects -- Research -- Analysis -- Methods -- Usage ,Biological sciences ,Identification and classification ,Usage ,Analysis ,Research ,Methods ,Health aspects - Abstract
Byline: Richard E. Herman (Nastech Pharmaceutical Company, Inc., Bothell, Washington); Ekaterina G. Makienko (Nastech Pharmaceutical Company, Inc., Bothell, Washington); Mary G. Prieve (Nastech Pharmaceutical Company, Inc., Bothell, Washington); Mark Fuller [...]
- Published
- 2007
- Full Text
- View/download PDF
38. Discovery of selective small-molecule CD80 inhibitors
- Author
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Uvebrant, Kristina, da Graca Thrige, Dorthe, Rosen, Anna, Akesson, Mats, Berg, Helena, Walse, Bjorn, and Bjork, Per
- Subjects
Medical research -- Analysis ,Medicine, Experimental -- Analysis ,Drugs -- Vehicles ,Protein-protein interactions -- Research -- Analysis ,Drug delivery systems -- Analysis -- Research ,Biological sciences ,Analysis ,Research - Abstract
Protein-protein interactions are widely found in biological systems controlling diverse cellular events. Because these interactions are implicated in many diseases such as autoimmunity and cancer, regulation of protein-protein interactions provides [...]
- Published
- 2007
39. A nuclear magnetic resonance-based functional assay for nicotinamide adenine dinucleotide synthetase
- Author
-
Stockman, Brian J., Lodovice, Ian J., Fisher, Douglas A., McColl, Alexander S., and Xie, Zhi
- Subjects
NAD (Coenzyme) -- Research -- Structure -- Analysis ,Enzymes -- Research -- Structure -- Analysis ,Biological sciences ,Structure ,Analysis ,Research - Abstract
Nicotinamide adenine dinucleotide synthetase (NadE) is an essential enzyme for bacterial pathogens and is thus a promising antibacterial target. It catalyzes the conversion of nicotinic acid adenine dinucleotide to nicotinamide [...]
- Published
- 2007
40. Beyond intuitive modeling: combining biophysical models with innovative experiments to move the circadian clock field forward
- Author
-
Forger, Daniel, Gonze, Didier, Virshup, David, and Welsh, David K.
- Subjects
Mathematical models -- Analysis -- Research ,Circadian rhythms -- Research -- Analysis ,Phosphorylation -- Research -- Analysis ,Biological sciences ,Analysis ,Research - Abstract
Abstract Two major approaches have been used to model circadian clocks. Qualitative modeling, used prior to the recent wealth of detailed molecular knowledge, makes general predictions but cannot provide detailed [...]
- Published
- 2007
41. Developing mathematical models of neurobehavioral performance for the 'real world'
- Author
-
Dean, II, Dennis A., Fletcher, Adam, Hursh, Steven R., and Klerman, Elizabeth B.
- Subjects
Mathematical models -- Usage -- Analysis -- Research ,Fatigue -- Research -- Analysis ,Circadian rhythms -- Analysis -- Usage -- Research ,Biological sciences ,Usage ,Analysis ,Research - Abstract
Abstract Work-related operations requiring extended wake durations, night, or rotating shifts negatively affect worker neurobehavioral performance and health. These types of work schedules are required in many industries, including the [...]
- Published
- 2007
42. Uncovering Physiologic Mechanisms of circadian rhythms and sleep/wake regulation through mathematical modeling
- Author
-
Kronauer, Richard E., Gunzelmann, Glenn, Van Dongen, Hans P.A., Doyle, III, Francis J., and Klerman, Elizabeth B.
- Subjects
Mathematical models -- Usage -- Analysis -- Research ,Systems biology -- Analysis -- Research -- Usage ,Circadian rhythms -- Research -- Testing -- Analysis -- Usage ,Sleep -- Research -- Testing -- Analysis -- Usage ,Biological sciences ,Testing ,Analysis ,Usage ,Research - Abstract
Abstract Mathematical models of neurobehavioral function are useful both for understanding the underlying physiology and for predicting the effects of rest-activity-work schedules and interventions on neurobehavioral function. In a symposium [...]
- Published
- 2007
43. Neuronal models for sleep-wake regulation and synaptic reorganization in the sleeping hippocampus
- Author
-
Best, Janet, Behn, Cecilia Diniz, Poe, Gina R., and Booth, Victoria
- Subjects
Hippocampus (Brain) -- Research -- Analysis ,Sleep-wake cycle -- Research -- Testing -- Analysis ,REM sleep -- Analysis -- Research ,Circadian rhythms -- Research -- Analysis ,Biological sciences ,Testing ,Analysis ,Research - Abstract
Abstract In this article, we discuss mathematical models that address the control of sleep-wake behavior in the infant and adult rodent and a model that addresses changes in single-cell firing [...]
- Published
- 2007
44. Association between morningness-eveningness and behavioral/emotional problems among adolescents
- Author
-
Gau, Susan Shur-Fen, Shang, Chi-Yung, Merikangas, Kathleen R., Chiu, Yen-Nan, Soong, Wei-Tsuen, and Cheng, Andrew Tai-Ann
- Subjects
Suicidal behavior -- Analysis -- Research -- Genetic aspects ,Human acts -- Research -- Psychological aspects -- Genetic aspects -- Analysis ,Genetic psychology -- Analysis -- Psychological aspects -- Research ,Teenagers -- Research -- Psychological aspects -- Analysis ,Youth -- Research -- Psychological aspects -- Analysis ,Circadian rhythms -- Research -- Analysis -- Genetic aspects -- Psychological aspects ,Substance abusers -- Research -- Analysis -- Psychological aspects ,Human behavior -- Research -- Psychological aspects -- Genetic aspects -- Analysis ,Biological sciences ,Psychological aspects ,Analysis ,Research ,Genetic aspects - Abstract
Abstract Adolescent eveningness is associated with age, parental monitoring, daytime sleepiness, sleep problems, moodiness, and the use of coffee. This study investigated the association between adolescent morningness-eveningness and psychopathology, substance [...]
- Published
- 2007
45. Dynamics of the adjustment of clock gene expression in the rat suprachiasmatic nucleus to an asymmetrical change from a long to a short photoperiod
- Author
-
Sumova, Alena, Kovacikova, Zuzana, and Illnerova, Helen
- Subjects
Biological rhythms -- Research -- Analysis ,Genes -- Research -- Structure -- Analysis ,Circadian rhythms -- Research -- Analysis ,Suprachiasmatic nucleus -- Research -- Analysis ,Biological sciences ,Structure ,Analysis ,Research - Abstract
Abstract The molecular clockwork of the rat suprachiasmatic nucleus, the site of the circadian clock, is affected by the photoperiod (Sumova et al., 2003). The aim of the present study [...]
- Published
- 2007
46. Modeling the behavior of coupled cellular circadian oscillators in the suprachiasmatic nucleus
- Author
-
Indic, Premananda, Schwartz, William J., Herzog, Erik D., Foley, Nicholas C., and Antle, Michael C.
- Subjects
Circadian rhythms -- Research -- Analysis ,Suprachiasmatic nucleus -- Analysis -- Research ,Biological sciences ,Analysis ,Research - Abstract
Abstract The suprachiasmatic nucleus (SCN) in the hypothalamus is the site of the master circadian clock in mammals, a complex tissue composed of multiple, coupled, single-cell circadian oscillators. Mathematical modeling [...]
- Published
- 2007
47. The paddlefish rostrum as an electrosensory organ: a novel adaptation for plankton feeding
- Author
-
Wilkens, Lon A. and Hofmann, Michael H.
- Subjects
Paddlefishes -- Research -- Analysis ,Biological sciences ,Analysis ,Research - Abstract
The ancient Mississippi River paddlefish, Polyodon spathula, has long been thought to use its oversized rostrum for excavation. Recent studies provide an entirely new interpretation for the function of the [...]
- Published
- 2007
48. Acetylcholinesterase inhibitors from plants
- Author
-
Mukherjee, Pulok K., Kumar, Venkatesan, Mal, Mainak, and Houghton, Peter J.
- Subjects
Acetylcholine -- Research -- Analysis ,Alzheimer's disease -- Research -- Care and treatment -- Analysis ,Acetylcholinesterase -- Research -- Analysis ,Biological sciences ,Health ,Science and technology ,Care and treatment ,Analysis ,Research - Abstract
Abstract Inhibition of acetylcholinesterase (AChE), the key enzyme in the breakdown of acetylcholine, is considered as a promising strategy for the treatment of neurological disorders such as Alzheimer's disease, senile [...]
- Published
- 2007
49. Circadian variations in clock gene expression of human bone marrow CD[34.sup.+] cells
- Author
-
Tsinkalovsky, Oleg, Smaaland, Rune, Rosenlund, Benedikte, Sothern, Robert B., Hirt, Asle, Steine, Solrun, Badiee, Azadeh, Abrahamsen, Jenny Foss, Eiken, Hans Geir, and Laerum, Ole Didrik
- Subjects
Hematopoiesis -- Research -- Analysis ,Bone marrow -- Structure -- Research -- Analysis ,Stem cells -- Structure -- Research -- Analysis ,Circadian rhythms -- Research -- Analysis ,Biological sciences ,Structure ,Analysis ,Research - Abstract
Abstract Time-dependent variations in clock gene expression have recently been observed in mouse hematopoietic cells, but the activity of these genes in human bone marrow (BM) has so far not [...]
- Published
- 2007
50. A quantitative model of sleep-wake dynamics based on the physiology of the brainstem ascending arousal system
- Author
-
Phillips, A.J.K. and Robinson, P.A.
- Subjects
Mathematical models -- Usage -- Analysis -- Research ,Circadian rhythms -- Research -- Analysis -- Usage ,Narcolepsy -- Research ,Sleep -- Testing -- Research -- Analysis -- Usage ,Biological sciences ,Testing ,Usage ,Analysis ,Research - Abstract
Abstract A quantitative, physiology-based model of the ascending arousal system is developed, using continuum neuronal population modeling, which involves averaging properties such as firing rates across neurons in each population. [...]
- Published
- 2007
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