1. Cross-kingdom sequence similarities between human micro-RNAs and plant viruses.
- Author
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Rebolledo-Mendez, Jovan, Vaishnav, Radhika, Cooper, Nigel, and Friedland, Robert
- Subjects
- *
PLANT viruses , *MICRORNA , *NUCLEOTIDE sequence , *BEAN common mosaic virus , *RICE tungro spherical virus , *ANTISENSE RNA - Abstract
Micro-RNAs regulate the expression of cellular and tissue phenotypes at a post-transcriptional level through a complex process involving complementary interactions between micro-RNAs and messenger-RNAs. similar nucleotide interactions have been shown to occur as cross-kingdom events; for example, between plant viruses and plant micro-RNAs and also between animal viruses and animal micro-RNAs. In this study, this view is expanded to look for cross-kingdom similarities between plant virus and human micro-RNA sequences. a method to identify significant nucleotoide sequence similarities between plant viruses and human micro-RNAs was created. Initial analyses demonstrate that plant viruses contain nucleotide sequences which exactly match the seed sequences of human micro-RNAs in both parallel and anti-parallel directions. For example, the bean common mosaic virus strain NL4 from Colombia contains sequences that match exactly the seed sequence for micro-RNA of the hsa-mir-1226 in the parallel direction, which suggests a cross-kingdom conservation. similarly, the rice yellow stunt viral cRNA contains a sequence that is an exact match in the anti-parallel direction to the seed sequence of hsa-micro-RNA let-7b. The functional implications of these results need to be explored. The finding of these cross-kingdom sequence similarities is a useful starting point in support of bench level investigations. [ABSTRACT FROM AUTHOR]
- Published
- 2013
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