1. Hydrophilic and Cell-Penetrable Pyrrolidinyl Peptide Nucleic Acid via Post-synthetic Modification with Hydrophilic Side Chains
- Author
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Boonsong Ditmangklo, Supason Wanichwecharungruang, Tirayut Vilaivan, Tanapat Palaga, Thanesuan Nuanyai, Chaturong Suparpprom, Porntip Pan-In, Chotima Vilaivan, Banphot Jiangchareon, and Haruthai Pansuwan
- Subjects
Peptide Nucleic Acids ,Cell Membrane Permeability ,Pyrrolidines ,Stereochemistry ,Biomedical Engineering ,Pharmaceutical Science ,Bioengineering ,Conjugated system ,010402 general chemistry ,01 natural sciences ,Permeability ,chemistry.chemical_compound ,Side chain ,Humans ,Cycloleucine ,Nucleic acid analogue ,Pharmacology ,Dipeptide ,Peptide nucleic acid ,010405 organic chemistry ,musculoskeletal, neural, and ocular physiology ,Organic Chemistry ,Temperature ,Dipeptides ,0104 chemical sciences ,HEK293 Cells ,Monomer ,Membrane ,Solubility ,chemistry ,biological sciences ,cardiovascular system ,Nucleic acid ,Hydrophobic and Hydrophilic Interactions ,tissues ,Biotechnology - Abstract
Peptide nucleic acid (PNA) is a nucleic acid mimic in which the deoxyribose-phosphate was replaced by a peptide-like backbone. The absence of negative charge in the PNA backbone leads to several unique behaviors including a stronger binding and salt independency of the PNA-DNA duplex stability. However, PNA possesses poor aqueous solubility and cannot directly penetrate cell membranes. These are major obstacles that limit in vivo applications of PNA. In previous strategies, the PNA can be conjugated to macromolecular carriers or modified with positively charged side chains such as guanidinium groups to improve the aqueous solubility and cell permeability. In general, a preformed modified PNA monomer was required. In this study, a new approach for post-synthetic modification of PNA backbone with one or more hydrophilic groups was proposed. The PNA used in this study was the conformationally constrained pyrrolidinyl PNA with prolyl-2-aminocyclopentanecarboxylic acid dipeptide backbone (acpcPNA) that shows several advantages over the conventional PNA. The aldehyde modifiers carrying different linkers (alkylene and oligo(ethylene glycol)) and end groups (-OH, -NH
- Published
- 2017
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