Search

Environmental genomics is a promising field for monitoring biodiversity in a timely fashion. Efforts have increasingly been dedicated to the use of bacteria DNA derived data to develop biotic indices for benthic monitoring. However, a substantial debate exists about whether bacteria-derived data using DNA metabarcoding should follow, for example, a taxonomy-based or a taxonomy-free approach to marine bioassessments. Here, we showcase the value of DNA-based monitoring using the impact of fish farming as an example of anthropogenic disturbances in coastal areas and compare the performance of taxonomy-based and taxonomy-free approaches in detecting environmental alterations. We analysed samples collected near to the farm cages and along distance gradients from two aquaculture installations, and at control sites, to evaluate the effect of this activity on bacterial assemblages. Using the putative response of bacterial taxa to stress we calculated the taxonomy-based biotic index microgAMBI. The distribution of individual amplicon sequence variants (ASVs), as a function of a gradient in sediment acid volatile sulphides, was then used to derive a taxonomy-free bacterial biotic index specific for this data set using a de novo approach based on quantile regression splines. Our results show that microgAMBI revealed a organically enriched environment along the gradient. However, the de novo biotic index outperformed microgAMBI by providing a higher discriminatory power in detecting changes in abiotic factors directly related to fish production, whilst allowing the identification of new ASVs bioindicators. The de novo strategy applied here represents a robust method to define new bioindicators in regions or habitats where no previous information about the response of bacteria to environmental stressors exists., (© 2021 John Wiley & Sons Ltd.)

The SIEBM (Iberian Symposium of Studies on Marine Biology) has a long tradition. The conference was first convened in 1979 and it has since been held approximately biannually. It was originally focused on marine benthos, but two editions ago it was decided to widen its objectives to include other related subjects. The 15th edition was held at the University of Alicante from 6th to 10th September 2010.

In the present study the fish assemblages in the rocky-bottom habitat of the Sierra Helada Natural Park (Alicante, Spain) were recorded to provide data for future evaluation of any changes induced by long-term management. Visual censuses were carried out along strip transects by Scuba diving on rocky bottoms at depths between 1 and 32 m. In the seven localities sampled, 44 species were recorded. Number of species, abundance, biomass and size structure values recorded did not show differences between high and low protection areas. Species composition was similar to other marine protected areas of the western-Mediterranean. The main differences found between localities can be attributed to the high heterogeneity and complexity of the habitat at smaller spatial scales.