1. Structure-Based Virtual Screening of Ultra-Large Library Yields Potent Antagonists for a Lipid GPCR
- Author
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Élie Besserer-Offroy, Egor Marin, Philippe Sarret, Rebecca L. Brouillette, Aleksandra Luginina, Anastasiia Sadybekov, Arman Sadybekov, Vadim Cherezov, Anastasiia Gusach, Jean-Michel Longpré, Vsevolod Katritch, Valentin Borshchevskiy, and Alexey Mishin
- Subjects
0301 basic medicine ,Protein Conformation ,CysLT receptors ,Mutant ,lcsh:QR1-502 ,Drug Evaluation, Preclinical ,Computational biology ,Ligands ,Biochemistry ,lcsh:Microbiology ,Article ,Small Molecule Libraries ,03 medical and health sciences ,User-Computer Interface ,0302 clinical medicine ,GPCR ,virtual ligand screening ,Humans ,cysteinyl leukotriene ,Receptor ,Molecular Biology ,G protein-coupled receptor ,Receptors, Leukotriene ,Virtual screening ,structure-based lead discovery ,Chemistry ,Antagonist ,asthma ,Chemical space ,Molecular Docking Simulation ,030104 developmental biology ,Cysteinyl leukotrienes ,Docking (molecular) ,uveal melanoma ,030217 neurology & neurosurgery - Abstract
Cysteinyl leukotriene G protein-coupled receptors, CysLT1R and CysLT2R, regulate bronchoconstrictive and pro-inflammatory effects and play a key role in allergic disorders, cardiovascular diseases, and cancer. CysLT1R antagonists have been widely used to treat asthma disorders, while CysLT2R is a potential target against uveal melanoma. However, very few selective antagonist chemotypes for CysLT receptors are available, and the design of such ligands has proved to be challenging. To overcome this obstacle, we took advantage of recently solved crystal structures of CysLT receptors and an ultra-large Enamine REAL library, representing a chemical space of 680 M readily available compounds. Virtual ligand screening employed 4D docking models comprising crystal structures of CysLT1R and CysLT2R and their corresponding ligand-optimized models. Functional assessment of the candidate hits yielded discovery of five novel antagonist chemotypes with sub-micromolar potencies and the best Ki = 220 nM at CysLT1R. One of the hits showed inverse agonism at the L129Q constitutively active mutant of CysLT2R, with potential utility against uveal melanoma.
- Published
- 2020
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